Wall clock time and date at job start Mon Mar 30 2020 05:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00130 * 2 1 4 4 H 1.48501 * 109.47169 * 270.00017 * 3 2 1 5 5 H 1.48502 * 109.47064 * 29.99803 * 3 2 1 6 6 H 1.48493 * 109.47526 * 150.00109 * 3 2 1 7 7 C 1.37881 * 119.99776 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99409 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99941 * 359.97438 * 7 2 1 10 10 S 1.81402 * 109.47155 * 180.02562 * 9 7 2 11 11 C 1.81397 * 103.00371 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47313 * 179.97438 * 11 10 9 13 13 O 1.42896 * 109.47055 * 180.02562 * 12 11 10 14 14 C 1.42895 * 113.99870 * 179.97438 * 13 12 11 15 15 H 1.09004 * 115.56601 * 4.31145 * 14 13 12 16 16 C 1.53006 * 117.49888 * 150.00270 * 14 13 12 17 17 C 1.52997 * 59.99924 * 107.49259 * 16 14 13 18 18 F 1.39903 * 117.49597 * 252.51064 * 17 16 14 19 19 F 1.39898 * 117.50066 * 107.49358 * 17 16 14 20 20 H 0.97006 * 119.99913 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.47141 * 60.00072 * 9 7 2 22 22 H 1.08998 * 109.47193 * 300.00235 * 9 7 2 23 23 H 1.09007 * 109.46949 * 60.00111 * 11 10 9 24 24 H 1.08999 * 109.46968 * 300.00234 * 11 10 9 25 25 H 1.08992 * 109.46666 * 59.99835 * 12 11 10 26 26 H 1.09005 * 109.47018 * 300.00328 * 12 11 10 27 27 H 1.08999 * 117.49661 * 214.98060 * 16 14 13 28 28 H 1.08997 * 117.49650 * 0.02562 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 16 2.4297 -3.8780 -0.0005 11 6 1.3515 -5.3367 0.0003 12 6 2.2083 -6.6043 -0.0003 13 8 1.3588 -7.7534 -0.0003 14 6 2.0631 -8.9967 -0.0014 15 1 3.1482 -8.9228 0.0718 16 6 1.3890 -10.1911 0.6770 17 6 1.4882 -10.1336 -0.8486 18 9 0.3131 -9.8763 -1.5630 19 9 2.3952 -10.9986 -1.4701 20 1 -0.4850 0.8401 -0.0004 21 1 0.6240 -2.5566 -0.8903 22 1 0.6246 -2.5570 0.8896 23 1 0.7220 -5.3237 -0.8896 24 1 0.7226 -5.3232 0.8904 25 1 2.8380 -6.6175 0.8892 26 1 2.8369 -6.6175 -0.8908 27 1 2.0306 -10.9028 1.1966 28 1 0.4082 -10.0284 1.1238 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594903711.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:42 Heat of formation + Delta-G solvation = -121.485094 kcal Electronic energy + Delta-G solvation = -14016.408973 eV Core-core repulsion = 11023.628700 eV Total energy + Delta-G solvation = -2992.780273 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.058 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.81173 -47.49576 -38.63105 -35.00093 -33.18339 -30.77503 -28.57769 -23.68640 -23.00498 -22.50273 -22.41500 -18.36221 -17.43887 -16.51255 -16.39583 -16.13893 -15.74279 -15.23834 -14.42473 -14.34381 -14.16406 -13.79035 -13.48770 -13.23139 -12.81721 -12.52328 -12.30495 -12.16291 -11.56278 -11.34327 -10.89446 -10.75963 -10.56104 -10.05347 -9.61943 -9.51817 -8.96846 -8.64594 -6.79430 -6.22499 -4.27267 2.20039 2.74684 2.86509 3.24709 3.29552 3.31234 3.36218 3.76662 4.01798 4.32576 4.33382 4.48897 4.87114 5.05158 5.08363 5.14678 5.17858 5.45645 5.46261 5.87268 6.02540 6.81732 7.04779 7.07143 7.71550 7.96329 8.74370 9.35969 10.88741 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.075164 B = 0.003607 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 372.430311 B = 7761.815242 C = 7887.425213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.065 3.935 3 Si 0.909 3.091 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.514 4.514 8 H 0.068 0.932 9 C 0.095 3.905 10 S -0.297 6.297 11 C -0.095 4.095 12 C 0.081 3.919 13 O -0.340 6.340 14 C 0.032 3.968 15 H 0.136 0.864 16 C -0.177 4.177 17 C 0.182 3.818 18 F -0.154 7.154 19 F -0.163 7.163 20 H 0.266 0.734 21 H 0.038 0.962 22 H 0.038 0.962 23 H 0.082 0.918 24 H 0.082 0.918 25 H 0.066 0.934 26 H 0.064 0.936 27 H 0.130 0.870 28 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.334 -18.475 1.330 18.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.139 4.139 3 Si 0.735 3.265 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.554 4.554 8 H 0.086 0.914 9 C -0.051 4.051 10 S -0.071 6.071 11 C -0.243 4.243 12 C 0.004 3.996 13 O -0.258 6.258 14 C -0.029 4.029 15 H 0.154 0.846 16 C -0.215 4.215 17 C 0.144 3.856 18 F -0.134 7.134 19 F -0.143 7.143 20 H 0.076 0.924 21 H 0.056 0.944 22 H 0.056 0.944 23 H 0.101 0.899 24 H 0.101 0.899 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.148 0.852 28 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 4.049 -18.319 1.287 18.805 hybrid contribution -0.879 0.687 -0.259 1.145 sum 3.169 -17.632 1.029 17.944 Atomic orbital electron populations 1.69958 1.06154 1.27431 1.49445 1.24977 0.95002 0.99331 0.94601 0.86319 0.79695 0.82078 0.78371 1.20315 1.20948 1.19537 1.20661 0.93496 0.88631 1.52561 0.91390 1.21078 0.93447 0.90273 1.00344 1.86509 1.20850 1.01622 1.98147 1.23094 1.01078 0.94503 1.05593 1.22431 0.92345 0.83009 1.01821 1.87930 1.32802 1.11827 1.93281 1.24013 0.97385 0.83069 0.98449 0.84615 1.24854 1.05866 0.99309 0.91449 1.20882 0.80376 0.96916 0.87376 1.93044 1.46322 1.93968 1.80076 1.93027 1.65933 1.70565 1.84816 0.92426 0.94395 0.94397 0.89899 0.89894 0.91595 0.91741 0.85199 0.85255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.84 13.29 55.43 0.74 -25.10 15 2 C 0.06 1.81 5.46 -17.82 -0.10 1.71 15 3 Si 0.91 21.20 29.54 -169.99 -5.02 16.17 15 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 15 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 15 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 15 7 C -0.51 -14.38 9.13 -34.44 -0.31 -14.70 15 8 H 0.07 1.89 7.71 -52.48 -0.40 1.49 15 9 C 0.10 2.46 5.70 36.00 0.21 2.67 15 10 S -0.30 -6.30 21.66 -107.50 -2.33 -8.63 15 11 C -0.09 -1.60 6.31 37.16 0.23 -1.37 15 12 C 0.08 1.10 5.82 37.16 0.22 1.31 15 13 O -0.34 -4.54 10.48 -35.23 -0.37 -4.91 15 14 C 0.03 0.32 6.43 -26.73 -0.17 0.15 15 15 H 0.14 1.01 7.93 -51.93 -0.41 0.60 15 16 C -0.18 -1.37 10.45 -26.73 -0.28 -1.65 15 17 C 0.18 1.97 5.26 -26.73 -0.14 1.83 15 18 F -0.15 -2.07 17.47 2.25 0.04 -2.03 15 19 F -0.16 -1.81 17.60 2.25 0.04 -1.77 15 20 H 0.27 7.23 8.31 -40.82 -0.34 6.89 15 21 H 0.04 1.02 8.14 -51.92 -0.42 0.60 15 22 H 0.04 1.01 8.14 -51.92 -0.42 0.59 15 23 H 0.08 1.43 8.14 -51.92 -0.42 1.00 15 24 H 0.08 1.39 8.14 -51.92 -0.42 0.97 15 25 H 0.07 0.81 8.14 -51.93 -0.42 0.39 15 26 H 0.06 0.84 8.14 -51.93 -0.42 0.42 15 27 H 0.13 0.64 8.14 -51.93 -0.42 0.22 15 28 H 0.13 0.97 8.14 -51.93 -0.42 0.55 15 LS Contribution 274.98 15.07 4.14 4.14 Total: -1.00 -29.90 274.98 -6.44 -36.34 By element: Atomic # 1 Polarization: -0.84 SS G_CDS: -3.33 Total: -4.17 kcal Atomic # 6 Polarization: -9.70 SS G_CDS: -0.35 Total: -10.05 kcal Atomic # 7 Polarization: -25.84 SS G_CDS: 0.74 Total: -25.10 kcal Atomic # 8 Polarization: -4.54 SS G_CDS: -0.37 Total: -4.91 kcal Atomic # 9 Polarization: -3.88 SS G_CDS: 0.08 Total: -3.80 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: -6.30 SS G_CDS: -2.33 Total: -8.63 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -29.90 -6.44 -36.34 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594903711.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.146 kcal (2) G-P(sol) polarization free energy of solvation -29.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds