Wall clock time and date at job start Mon Mar 30 2020 05:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00130 * 2 1 4 4 H 1.48501 * 109.47169 * 270.00017 * 3 2 1 5 5 H 1.48502 * 109.47064 * 29.99803 * 3 2 1 6 6 H 1.48493 * 109.47526 * 150.00109 * 3 2 1 7 7 C 1.37881 * 119.99776 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99409 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99941 * 359.97438 * 7 2 1 10 10 S 1.81402 * 109.47155 * 180.02562 * 9 7 2 11 11 C 1.81397 * 103.00371 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47313 * 179.97438 * 11 10 9 13 13 O 1.42896 * 109.47055 * 180.02562 * 12 11 10 14 14 C 1.42895 * 113.99870 * 179.97438 * 13 12 11 15 15 H 1.09004 * 115.56601 * 4.31145 * 14 13 12 16 16 C 1.53006 * 117.49888 * 150.00270 * 14 13 12 17 17 C 1.52997 * 59.99924 * 107.49259 * 16 14 13 18 18 F 1.39903 * 117.49597 * 252.51064 * 17 16 14 19 19 F 1.39898 * 117.50066 * 107.49358 * 17 16 14 20 20 H 0.97006 * 119.99913 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.47141 * 60.00072 * 9 7 2 22 22 H 1.08998 * 109.47193 * 300.00235 * 9 7 2 23 23 H 1.09007 * 109.46949 * 60.00111 * 11 10 9 24 24 H 1.08999 * 109.46968 * 300.00234 * 11 10 9 25 25 H 1.08992 * 109.46666 * 59.99835 * 12 11 10 26 26 H 1.09005 * 109.47018 * 300.00328 * 12 11 10 27 27 H 1.08999 * 117.49661 * 214.98060 * 16 14 13 28 28 H 1.08997 * 117.49650 * 0.02562 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 16 2.4297 -3.8780 -0.0005 11 6 1.3515 -5.3367 0.0003 12 6 2.2083 -6.6043 -0.0003 13 8 1.3588 -7.7534 -0.0003 14 6 2.0631 -8.9967 -0.0014 15 1 3.1482 -8.9228 0.0718 16 6 1.3890 -10.1911 0.6770 17 6 1.4882 -10.1336 -0.8486 18 9 0.3131 -9.8763 -1.5630 19 9 2.3952 -10.9986 -1.4701 20 1 -0.4850 0.8401 -0.0004 21 1 0.6240 -2.5566 -0.8903 22 1 0.6246 -2.5570 0.8896 23 1 0.7220 -5.3237 -0.8896 24 1 0.7226 -5.3232 0.8904 25 1 2.8380 -6.6175 0.8892 26 1 2.8369 -6.6175 -0.8908 27 1 2.0306 -10.9028 1.1966 28 1 0.4082 -10.0284 1.1238 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594903711.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:42 Heat of formation + Delta-G solvation = -139.249603 kcal Electronic energy + Delta-G solvation = -14017.179300 eV Core-core repulsion = 11023.628700 eV Total energy + Delta-G solvation = -2993.550600 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.058 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.66067 -48.37446 -39.55467 -35.84706 -35.30713 -31.99217 -30.69859 -25.51018 -23.97229 -23.68418 -23.27654 -19.23427 -18.69107 -18.24178 -17.36839 -17.07478 -17.03647 -16.78344 -16.18370 -15.33624 -15.05368 -14.72750 -14.67327 -14.57547 -14.44461 -13.97426 -13.90948 -13.57403 -12.76358 -12.69224 -12.50634 -12.32753 -12.03607 -11.61076 -11.36095 -10.80175 -10.75636 -10.38911 -8.54085 -8.34475 -6.48268 0.72021 1.41285 1.42550 1.54754 1.89369 1.94555 2.14011 2.35745 2.40861 3.00464 3.31852 3.57567 3.63083 3.84637 3.99933 4.14651 4.34212 4.60276 4.64137 4.71956 4.82047 4.90998 4.92469 5.55713 5.85367 5.88650 6.59438 7.20178 8.77640 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.075164 B = 0.003607 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 372.430311 B = 7761.815242 C = 7887.425213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.012 3.988 3 Si 0.980 3.020 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.537 4.537 8 H 0.066 0.934 9 C 0.092 3.908 10 S -0.287 6.287 11 C -0.087 4.087 12 C 0.091 3.909 13 O -0.361 6.361 14 C 0.022 3.978 15 H 0.164 0.836 16 C -0.144 4.144 17 C 0.152 3.848 18 F -0.177 7.177 19 F -0.168 7.168 20 H 0.271 0.729 21 H 0.014 0.986 22 H 0.017 0.983 23 H 0.076 0.924 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.071 0.929 27 H 0.166 0.834 28 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.696 -19.184 2.098 19.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.188 4.188 3 Si 0.803 3.197 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.187 1.187 7 C -0.576 4.576 8 H 0.084 0.916 9 C -0.055 4.055 10 S -0.061 6.061 11 C -0.235 4.235 12 C 0.014 3.986 13 O -0.279 6.279 14 C -0.039 4.039 15 H 0.181 0.819 16 C -0.181 4.181 17 C 0.115 3.885 18 F -0.158 7.158 19 F -0.148 7.148 20 H 0.080 0.920 21 H 0.033 0.967 22 H 0.035 0.965 23 H 0.095 0.905 24 H 0.103 0.897 25 H 0.103 0.897 26 H 0.089 0.911 27 H 0.184 0.816 28 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 5.417 -19.046 2.054 19.908 hybrid contribution -1.338 0.763 -0.509 1.623 sum 4.078 -18.283 1.545 18.796 Atomic orbital electron populations 1.70068 1.07773 1.28649 1.49962 1.25962 0.95909 1.03217 0.93749 0.85223 0.78477 0.77261 0.78765 1.19457 1.20116 1.18729 1.20990 0.93575 0.89999 1.53026 0.91607 1.20781 0.94073 0.92521 0.98164 1.86193 1.20120 1.01683 1.98086 1.23118 1.00801 0.94191 1.05426 1.22240 0.91507 0.81800 1.03072 1.87874 1.33693 1.12789 1.93567 1.24413 0.98855 0.81815 0.98768 0.81861 1.25001 1.06416 0.97865 0.88834 1.21357 0.80061 0.98233 0.88886 1.92989 1.47668 1.94240 1.80854 1.93010 1.65975 1.70688 1.85144 0.92045 0.96729 0.96469 0.90514 0.89737 0.89736 0.91080 0.81623 0.84923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.45 13.29 21.45 0.28 -54.16 15 2 C 0.01 0.70 5.46 84.66 0.46 1.16 15 3 Si 0.98 43.26 29.54 68.60 2.03 45.29 15 4 H -0.27 -11.49 7.11 99.48 0.71 -10.78 15 5 H -0.28 -11.75 7.11 99.48 0.71 -11.04 15 6 H -0.26 -11.21 7.11 99.48 0.71 -10.50 15 7 C -0.54 -30.46 9.13 25.60 0.23 -30.23 15 8 H 0.07 3.68 7.71 -2.91 -0.02 3.65 15 9 C 0.09 4.89 5.70 71.23 0.41 5.30 15 10 S -0.29 -12.09 21.66 -56.49 -1.22 -13.31 15 11 C -0.09 -2.88 6.31 71.98 0.45 -2.43 15 12 C 0.09 2.28 5.82 71.98 0.42 2.70 15 13 O -0.36 -8.94 10.48 -148.98 -1.56 -10.50 15 14 C 0.02 0.37 6.43 30.60 0.20 0.57 15 15 H 0.16 1.85 7.93 -2.38 -0.02 1.84 15 16 C -0.14 -1.77 10.45 30.60 0.32 -1.45 15 17 C 0.15 3.05 5.26 30.59 0.16 3.21 15 18 F -0.18 -4.73 17.47 44.97 0.79 -3.95 15 19 F -0.17 -3.48 17.60 44.97 0.79 -2.69 15 20 H 0.27 14.82 8.31 -92.70 -0.77 14.05 15 21 H 0.01 0.81 8.14 -2.39 -0.02 0.79 15 22 H 0.02 0.95 8.14 -2.39 -0.02 0.93 15 23 H 0.08 2.64 8.14 -2.39 -0.02 2.62 15 24 H 0.08 2.78 8.14 -2.39 -0.02 2.76 15 25 H 0.08 1.83 8.14 -2.39 -0.02 1.81 15 26 H 0.07 1.70 8.14 -2.38 -0.02 1.68 15 27 H 0.17 0.87 8.14 -2.39 -0.02 0.85 15 28 H 0.13 1.61 8.14 -2.39 -0.02 1.59 15 Total: -1.00 -65.16 274.98 4.91 -60.25 By element: Atomic # 1 Polarization: -0.90 SS G_CDS: 1.15 Total: 0.25 kcal Atomic # 6 Polarization: -23.83 SS G_CDS: 2.65 Total: -21.18 kcal Atomic # 7 Polarization: -54.45 SS G_CDS: 0.28 Total: -54.16 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: -1.56 Total: -10.50 kcal Atomic # 9 Polarization: -8.21 SS G_CDS: 1.58 Total: -6.63 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Atomic # 16 Polarization: -12.09 SS G_CDS: -1.22 Total: -13.31 kcal Total: -65.16 4.91 -60.25 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594903711.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.998 kcal (2) G-P(sol) polarization free energy of solvation -65.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds