Wall clock time and date at job start Mon Mar 30 2020 05:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30939 * 1 3 3 Si 1.86795 * 119.99860 * 2 1 4 4 H 1.48498 * 109.47127 * 269.99620 * 3 2 1 5 5 H 1.48496 * 109.47436 * 29.99788 * 3 2 1 6 6 H 1.48504 * 109.47179 * 150.00026 * 3 2 1 7 7 C 1.39870 * 119.99838 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00111 * 200.06238 * 7 2 1 9 9 C 1.41074 * 120.00230 * 20.06131 * 7 2 1 10 10 C 1.41227 * 120.33835 * 36.37515 * 9 7 2 11 11 F 1.35104 * 119.89667 * 0.02562 * 10 9 7 12 12 C 1.37809 * 120.21146 * 180.02562 * 10 9 7 13 13 C 1.38884 * 120.57416 * 0.03889 * 12 10 9 14 14 F 1.35100 * 119.95765 * 179.97438 * 13 12 10 15 15 C 1.39545 * 120.08424 * 0.02562 * 13 12 10 16 16 C 1.39762 * 120.24195 * 359.96621 * 15 13 12 17 17 O 1.35446 * 119.02624 * 179.97438 * 16 15 13 18 18 C 1.42830 * 117.11862 * 326.32994 * 17 16 15 19 19 C 1.50607 * 110.51402 * 47.99914 * 18 17 16 20 20 C 1.33151 * 119.97033 * 328.81828 * 19 18 17 21 21 H 0.96996 * 119.99565 * 0.02562 * 1 2 3 22 22 H 1.08006 * 119.71650 * 180.02562 * 12 10 9 23 23 H 1.09008 * 109.27132 * 168.25932 * 18 17 16 24 24 H 1.09001 * 109.27070 * 287.72870 * 18 17 16 25 25 H 1.08000 * 120.02045 * 148.84419 * 19 18 17 26 26 H 1.07993 * 120.97926 * 180.60203 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3094 0.0000 0.0000 3 14 2.2433 1.6177 0.0000 4 1 2.4909 2.0464 -1.4001 5 1 1.4408 2.6527 0.7000 6 1 3.5409 1.4402 0.7000 7 6 2.0087 -1.2113 0.0005 8 1 3.0396 -1.2396 0.3214 9 6 1.3675 -2.3962 -0.4180 10 6 0.4340 -2.3662 -1.4773 11 9 0.1529 -1.1976 -2.0942 12 6 -0.1912 -3.5251 -1.8837 13 6 0.0865 -4.7340 -1.2589 14 9 -0.5340 -5.8625 -1.6671 15 6 1.0049 -4.7843 -0.2095 16 6 1.6500 -3.6204 0.2178 17 8 2.5365 -3.6975 1.2390 18 6 2.2683 -4.6563 2.2630 19 6 1.9324 -5.9942 1.6585 20 6 1.3216 -6.0557 0.4769 21 1 -0.4849 0.8400 -0.0004 22 1 -0.9035 -3.4930 -2.6949 23 1 3.1479 -4.7596 2.8985 24 1 1.4278 -4.3129 2.8662 25 1 2.1864 -6.9034 2.1832 26 1 1.0645 -7.0060 0.0329 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687729179.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:35 Heat of formation + Delta-G solvation = -90.148791 kcal Electronic energy + Delta-G solvation = -16671.133059 eV Core-core repulsion = 13544.267678 eV Total energy + Delta-G solvation = -3126.865380 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 238.055 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -47.81875 -47.21984 -39.41647 -35.91486 -33.99524 -32.90552 -29.67511 -29.14842 -25.28487 -24.99830 -22.37409 -21.18830 -18.60616 -17.56920 -16.91807 -16.76853 -15.32551 -15.11277 -14.88308 -14.68592 -14.44756 -13.87483 -13.75717 -13.41545 -13.16602 -12.77590 -12.29829 -11.65427 -11.45553 -11.42653 -11.24544 -10.75702 -10.65639 -10.43026 -9.95449 -9.65691 -9.34482 -8.88138 -7.40759 -7.02321 -6.91882 -4.47544 1.67058 2.33901 2.96440 3.07120 3.10726 3.16564 3.90186 4.19277 4.45543 5.10955 5.22526 5.32256 5.33593 5.63532 5.80366 5.91802 5.94214 6.03914 6.41395 6.67775 6.73353 7.02433 7.03901 7.20479 7.32971 7.38762 7.85899 8.09431 8.32181 8.57943 8.72657 10.07235 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.027803 B = 0.010455 C = 0.007928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.829418 B = 2677.431948 C = 3531.113375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.776 5.776 2 C 0.074 3.926 3 Si 0.916 3.084 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.260 1.260 7 C -0.443 4.443 8 H 0.092 0.908 9 C 0.067 3.933 10 C 0.080 3.920 11 F -0.129 7.129 12 C -0.179 4.179 13 C 0.031 3.969 14 F -0.157 7.157 15 C -0.154 4.154 16 C 0.075 3.925 17 O -0.297 6.297 18 C 0.099 3.901 19 C -0.224 4.224 20 C -0.075 4.075 21 H 0.286 0.714 22 H 0.119 0.881 23 H 0.100 0.900 24 H 0.056 0.944 25 H 0.120 0.880 26 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.807 -4.360 1.811 5.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C -0.147 4.147 3 Si 0.740 3.260 4 H -0.191 1.191 5 H -0.203 1.203 6 H -0.184 1.184 7 C -0.471 4.471 8 H 0.110 0.890 9 C 0.063 3.937 10 C 0.059 3.941 11 F -0.107 7.107 12 C -0.199 4.199 13 C 0.011 3.989 14 F -0.136 7.136 15 C -0.155 4.155 16 C 0.029 3.971 17 O -0.211 6.211 18 C 0.024 3.976 19 C -0.243 4.243 20 C -0.093 4.093 21 H 0.097 0.903 22 H 0.137 0.863 23 H 0.118 0.882 24 H 0.074 0.926 25 H 0.138 0.862 26 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.734 -4.069 1.832 4.787 hybrid contribution -0.197 0.411 -0.134 0.475 sum 1.537 -3.658 1.698 4.315 Atomic orbital electron populations 1.69797 1.07827 1.30269 1.32047 1.25870 0.94724 1.01530 0.92555 0.86167 0.80405 0.79981 0.79488 1.19059 1.20259 1.18413 1.19281 0.99413 0.90423 1.37942 0.88954 1.16962 0.93160 0.91365 0.92224 1.17104 1.02583 0.80069 0.94340 1.91371 1.92380 1.46415 1.80567 1.20407 1.04537 0.91296 1.03641 1.16349 1.00877 0.81631 1.00085 1.91315 1.81925 1.50144 1.90236 1.18655 1.03345 0.93473 1.00067 1.18409 0.96013 0.91617 0.91052 1.85920 1.46163 1.56852 1.32163 1.21513 1.01299 0.85791 0.89009 1.23794 1.03113 0.98927 0.98423 1.21643 0.96577 0.96194 0.94890 0.90295 0.86298 0.88195 0.92598 0.86210 0.86114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.14 11.11 55.54 0.62 -19.52 15 2 C 0.07 1.84 4.50 -17.32 -0.08 1.77 15 3 Si 0.92 18.78 29.60 -169.99 -5.03 13.74 15 4 H -0.27 -5.43 7.11 56.52 0.40 -5.03 15 5 H -0.28 -5.52 7.11 56.52 0.40 -5.12 15 6 H -0.26 -5.23 7.11 56.52 0.40 -4.82 15 7 C -0.44 -11.64 8.53 -37.90 -0.32 -11.96 15 8 H 0.09 2.37 7.91 -52.49 -0.42 1.96 15 9 C 0.07 1.76 5.40 -106.71 -0.58 1.18 15 10 C 0.08 2.07 6.68 -38.60 -0.26 1.81 15 11 F -0.13 -3.38 14.23 2.25 0.03 -3.34 15 12 C -0.18 -4.18 9.96 -39.50 -0.39 -4.58 15 13 C 0.03 0.71 7.31 -38.86 -0.28 0.42 15 14 F -0.16 -3.34 16.81 2.25 0.04 -3.30 15 15 C -0.15 -3.50 5.80 -104.88 -0.61 -4.11 15 16 C 0.07 1.83 6.47 -38.04 -0.25 1.59 15 17 O -0.30 -6.73 9.91 -18.03 -0.18 -6.91 15 18 C 0.10 1.75 7.13 35.96 0.26 2.00 15 19 C -0.22 -3.72 10.27 -36.13 -0.37 -4.09 15 20 C -0.08 -1.42 9.81 -37.39 -0.37 -1.79 15 21 H 0.29 6.78 8.30 -40.82 -0.34 6.44 15 22 H 0.12 2.50 8.06 -52.48 -0.42 2.08 15 23 H 0.10 1.40 8.14 -51.92 -0.42 0.98 15 24 H 0.06 0.97 8.14 -51.93 -0.42 0.55 15 25 H 0.12 1.55 8.06 -52.49 -0.42 1.13 15 26 H 0.12 2.03 7.97 -52.49 -0.42 1.61 15 LS Contribution 241.44 15.07 3.64 3.64 Total: -1.00 -27.90 241.44 -5.79 -33.69 By element: Atomic # 1 Polarization: 1.42 SS G_CDS: -1.66 Total: -0.23 kcal Atomic # 6 Polarization: -14.51 SS G_CDS: -3.25 Total: -17.76 kcal Atomic # 7 Polarization: -20.14 SS G_CDS: 0.62 Total: -19.52 kcal Atomic # 8 Polarization: -6.73 SS G_CDS: -0.18 Total: -6.91 kcal Atomic # 9 Polarization: -6.72 SS G_CDS: 0.07 Total: -6.65 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.03 Total: 13.74 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -27.90 -5.79 -33.69 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687729179.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.455 kcal (2) G-P(sol) polarization free energy of solvation -27.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds