Wall clock time and date at job start Mon Mar 30 2020 05:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30939 * 1 3 3 Si 1.86795 * 119.99860 * 2 1 4 4 H 1.48498 * 109.47127 * 269.99620 * 3 2 1 5 5 H 1.48496 * 109.47436 * 29.99788 * 3 2 1 6 6 H 1.48504 * 109.47179 * 150.00026 * 3 2 1 7 7 C 1.39870 * 119.99838 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00111 * 200.06238 * 7 2 1 9 9 C 1.41074 * 120.00230 * 20.06131 * 7 2 1 10 10 C 1.41227 * 120.33835 * 36.37515 * 9 7 2 11 11 F 1.35104 * 119.89667 * 0.02562 * 10 9 7 12 12 C 1.37809 * 120.21146 * 180.02562 * 10 9 7 13 13 C 1.38884 * 120.57416 * 0.03889 * 12 10 9 14 14 F 1.35100 * 119.95765 * 179.97438 * 13 12 10 15 15 C 1.39545 * 120.08424 * 0.02562 * 13 12 10 16 16 C 1.39762 * 120.24195 * 359.96621 * 15 13 12 17 17 O 1.35446 * 119.02624 * 179.97438 * 16 15 13 18 18 C 1.42830 * 117.11862 * 326.32994 * 17 16 15 19 19 C 1.50607 * 110.51402 * 47.99914 * 18 17 16 20 20 C 1.33151 * 119.97033 * 328.81828 * 19 18 17 21 21 H 0.96996 * 119.99565 * 0.02562 * 1 2 3 22 22 H 1.08006 * 119.71650 * 180.02562 * 12 10 9 23 23 H 1.09008 * 109.27132 * 168.25932 * 18 17 16 24 24 H 1.09001 * 109.27070 * 287.72870 * 18 17 16 25 25 H 1.08000 * 120.02045 * 148.84419 * 19 18 17 26 26 H 1.07993 * 120.97926 * 180.60203 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3094 0.0000 0.0000 3 14 2.2433 1.6177 0.0000 4 1 2.4909 2.0464 -1.4001 5 1 1.4408 2.6527 0.7000 6 1 3.5409 1.4402 0.7000 7 6 2.0087 -1.2113 0.0005 8 1 3.0396 -1.2396 0.3214 9 6 1.3675 -2.3962 -0.4180 10 6 0.4340 -2.3662 -1.4773 11 9 0.1529 -1.1976 -2.0942 12 6 -0.1912 -3.5251 -1.8837 13 6 0.0865 -4.7340 -1.2589 14 9 -0.5340 -5.8625 -1.6671 15 6 1.0049 -4.7843 -0.2095 16 6 1.6500 -3.6204 0.2178 17 8 2.5365 -3.6975 1.2390 18 6 2.2683 -4.6563 2.2630 19 6 1.9324 -5.9942 1.6585 20 6 1.3216 -6.0557 0.4769 21 1 -0.4849 0.8400 -0.0004 22 1 -0.9035 -3.4930 -2.6949 23 1 3.1479 -4.7596 2.8985 24 1 1.4278 -4.3129 2.8662 25 1 2.1864 -6.9034 2.1832 26 1 1.0645 -7.0060 0.0329 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687729179.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:35 Heat of formation + Delta-G solvation = -105.648334 kcal Electronic energy + Delta-G solvation = -16671.805169 eV Core-core repulsion = 13544.267678 eV Total energy + Delta-G solvation = -3127.537491 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 238.055 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.58218 -49.18668 -41.09420 -37.69281 -35.76356 -34.53063 -31.50345 -30.84813 -27.09317 -26.60618 -24.11229 -23.00999 -20.26713 -19.39559 -18.67260 -18.43936 -17.11400 -16.80125 -16.65140 -16.41316 -16.15155 -15.68691 -15.58964 -15.12521 -14.80880 -14.44111 -13.91661 -13.39411 -13.34513 -12.98575 -12.91290 -12.45908 -12.28036 -12.10406 -11.74798 -11.27209 -11.08761 -10.59404 -9.28982 -8.76639 -8.71615 -6.42573 0.01725 0.48859 1.33286 1.39582 1.52107 1.55538 2.20047 2.49240 2.69786 3.24292 3.49172 3.80379 3.91375 4.04575 4.17965 4.25798 4.44620 4.55633 4.84408 4.99117 5.14150 5.14729 5.38224 5.46407 5.53978 5.71466 6.03976 6.23682 6.45130 6.70904 6.89583 8.25002 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.027803 B = 0.010455 C = 0.007928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.829418 B = 2677.431948 C = 3531.113375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.035 3.965 3 Si 0.984 3.016 4 H -0.264 1.264 5 H -0.265 1.265 6 H -0.254 1.254 7 C -0.476 4.476 8 H 0.086 0.914 9 C 0.038 3.962 10 C 0.050 3.950 11 F -0.140 7.140 12 C -0.181 4.181 13 C 0.030 3.970 14 F -0.146 7.146 15 C -0.155 4.155 16 C 0.060 3.940 17 O -0.317 6.317 18 C 0.079 3.921 19 C -0.184 4.184 20 C -0.114 4.114 21 H 0.292 0.708 22 H 0.138 0.862 23 H 0.144 0.856 24 H 0.057 0.943 25 H 0.170 0.830 26 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.556 -5.586 2.954 6.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.182 4.182 3 Si 0.804 3.196 4 H -0.189 1.189 5 H -0.190 1.190 6 H -0.177 1.177 7 C -0.504 4.504 8 H 0.104 0.896 9 C 0.034 3.966 10 C 0.029 3.971 11 F -0.118 7.118 12 C -0.201 4.201 13 C 0.009 3.991 14 F -0.125 7.125 15 C -0.157 4.157 16 C 0.014 3.986 17 O -0.233 6.233 18 C 0.005 3.995 19 C -0.202 4.202 20 C -0.132 4.132 21 H 0.103 0.897 22 H 0.156 0.844 23 H 0.161 0.839 24 H 0.075 0.925 25 H 0.188 0.812 26 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 2.478 -5.322 2.982 6.585 hybrid contribution -0.418 0.587 -0.378 0.814 sum 2.060 -4.735 2.605 5.783 Atomic orbital electron populations 1.69838 1.09221 1.31395 1.33186 1.26706 0.95399 1.04563 0.91496 0.85160 0.79268 0.75677 0.79515 1.18927 1.18955 1.17719 1.19429 0.99424 0.91620 1.39905 0.89604 1.17355 0.93881 0.92588 0.92752 1.17336 1.03922 0.80468 0.95337 1.91321 1.92602 1.47081 1.80826 1.20597 1.04508 0.90936 1.04038 1.16449 1.00782 0.81756 1.00068 1.91336 1.81673 1.49372 1.90109 1.19055 1.02043 0.94910 0.99654 1.18552 0.96426 0.91731 0.91867 1.85880 1.45961 1.58797 1.32614 1.22065 1.03605 0.85505 0.88288 1.24245 0.98861 1.00023 0.97045 1.21814 0.99713 0.95232 0.96448 0.89724 0.84420 0.83893 0.92490 0.81220 0.83819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -43.27 11.11 21.82 0.24 -43.03 15 2 C 0.04 1.80 4.50 85.22 0.38 2.19 15 3 Si 0.98 38.90 29.60 68.60 2.03 40.93 15 4 H -0.26 -10.32 7.11 99.48 0.71 -9.61 15 5 H -0.27 -9.85 7.11 99.48 0.71 -9.14 15 6 H -0.25 -9.63 7.11 99.48 0.71 -8.93 15 7 C -0.48 -25.84 8.53 23.36 0.20 -25.64 15 8 H 0.09 4.58 7.91 -2.91 -0.02 4.56 15 9 C 0.04 2.06 5.40 -21.22 -0.11 1.95 15 10 C 0.05 2.68 6.68 22.90 0.15 2.84 15 11 F -0.14 -7.60 14.23 44.97 0.64 -6.96 15 12 C -0.18 -8.57 9.96 22.32 0.22 -8.35 15 13 C 0.03 1.35 7.31 22.74 0.17 1.51 15 14 F -0.15 -5.99 16.81 44.97 0.76 -5.23 15 15 C -0.15 -6.94 5.80 -20.03 -0.12 -7.06 15 16 C 0.06 2.97 6.47 23.27 0.15 3.12 15 17 O -0.32 -14.22 9.91 -87.43 -0.87 -15.08 15 18 C 0.08 2.56 7.13 71.21 0.51 3.07 15 19 C -0.18 -5.31 10.27 24.51 0.25 -5.06 15 20 C -0.11 -4.00 9.81 23.69 0.23 -3.77 15 21 H 0.29 14.15 8.30 -92.71 -0.77 13.38 15 22 H 0.14 5.80 8.06 -2.91 -0.02 5.77 15 23 H 0.14 3.37 8.14 -2.38 -0.02 3.35 15 24 H 0.06 1.85 8.14 -2.39 -0.02 1.83 15 25 H 0.17 3.26 8.06 -2.91 -0.02 3.24 15 26 H 0.14 4.32 7.97 -2.91 -0.02 4.30 15 Total: -1.00 -61.89 241.44 6.06 -55.84 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: 1.22 Total: 8.75 kcal Atomic # 6 Polarization: -37.25 SS G_CDS: 2.04 Total: -35.21 kcal Atomic # 7 Polarization: -43.27 SS G_CDS: 0.24 Total: -43.03 kcal Atomic # 8 Polarization: -14.22 SS G_CDS: -0.87 Total: -15.08 kcal Atomic # 9 Polarization: -13.58 SS G_CDS: 1.40 Total: -12.19 kcal Atomic # 14 Polarization: 38.90 SS G_CDS: 2.03 Total: 40.93 kcal Total: -61.89 6.06 -55.84 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687729179.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.812 kcal (2) G-P(sol) polarization free energy of solvation -61.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds