Wall clock time and date at job start Mon Mar 30 2020 05:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31961 * 1 3 3 Si 1.86802 * 120.00239 * 2 1 4 4 H 1.48503 * 109.47197 * 271.09786 * 3 2 1 5 5 H 1.48498 * 109.47262 * 31.09594 * 3 2 1 6 6 H 1.48495 * 109.47042 * 151.09987 * 3 2 1 7 7 C 1.38191 * 120.00000 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99870 * 339.75899 * 7 2 1 9 9 N 1.37135 * 120.00396 * 159.75969 * 7 2 1 10 10 C 1.38159 * 119.99898 * 329.50891 * 9 7 2 11 11 O 1.35876 * 120.00011 * 320.34081 * 10 9 7 12 12 C 1.34193 * 120.00019 * 140.34121 * 10 9 7 13 13 C 1.50881 * 127.57013 * 178.57506 * 12 10 9 14 14 C 1.49007 * 111.27654 * 180.02562 * 13 12 10 15 15 C 1.30334 * 117.18616 * 359.88763 * 14 13 12 16 16 S 1.76459 * 109.80428 * 0.10744 * 15 14 13 17 17 C 1.46496 * 120.00056 * 149.50908 * 9 7 2 18 18 C 1.53001 * 117.50295 * 13.92885 * 17 9 7 19 19 C 1.53002 * 60.00043 * 252.51085 * 18 17 9 20 20 H 0.97006 * 119.99738 * 359.97438 * 1 2 3 21 21 H 0.96698 * 114.00262 * 1.64248 * 11 10 9 22 22 H 1.09004 * 109.11095 * 300.52098 * 13 12 10 23 23 H 1.09001 * 109.11181 * 59.62091 * 13 12 10 24 24 H 1.08000 * 121.47053 * 179.97438 * 14 13 12 25 25 H 1.08004 * 125.12175 * 180.02562 * 15 14 13 26 26 H 1.09001 * 115.55198 * 159.63356 * 17 9 7 27 27 H 1.08998 * 117.49489 * 359.97438 * 18 17 9 28 28 H 1.08997 * 117.50401 * 145.01843 * 18 17 9 29 29 H 1.09003 * 117.49400 * 252.51319 * 19 18 17 30 30 H 1.08997 * 117.50260 * 107.48553 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3196 0.0000 0.0000 3 14 2.2537 1.6177 0.0000 4 1 2.4780 2.0598 -1.3998 5 1 1.4630 2.6459 0.7231 6 1 3.5626 1.4335 0.6766 7 6 2.0106 -1.1968 -0.0005 8 1 1.5205 -2.1034 0.3227 9 7 3.3184 -1.2333 -0.4114 10 6 3.7678 -0.3413 -1.3659 11 8 2.9776 -0.0240 -2.4248 12 6 4.9847 0.2117 -1.2474 13 6 5.6538 1.1751 -2.1964 14 6 7.0088 1.5598 -1.7102 15 6 7.4082 1.0373 -0.5849 16 16 6.1567 -0.0284 0.0569 17 6 4.2390 -2.2182 0.1618 18 6 3.6305 -3.3758 0.9560 19 6 4.3748 -2.2555 1.6854 20 1 -0.4850 0.8401 0.0004 21 1 2.1107 -0.4522 -2.4109 22 1 5.7453 0.7057 -3.1759 23 1 5.0400 2.0714 -2.2866 24 1 7.6338 2.2436 -2.2652 25 1 8.3625 1.2268 -0.1160 26 1 5.1315 -2.4267 -0.4282 27 1 2.5451 -3.4042 1.0524 28 1 4.1224 -4.3461 0.8885 29 1 5.3565 -2.4888 2.0975 30 1 3.7791 -1.5471 2.2611 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725538812.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:00 Heat of formation + Delta-G solvation = 45.002820 kcal Electronic energy + Delta-G solvation = -15552.300440 eV Core-core repulsion = 13055.543243 eV Total energy + Delta-G solvation = -2496.757196 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.93841 -36.62311 -35.57344 -33.26473 -31.89694 -29.56200 -25.91707 -24.13969 -21.77374 -21.40485 -20.12534 -19.07240 -18.45542 -16.50775 -15.85448 -15.64481 -14.38331 -14.32290 -13.82889 -13.61858 -13.40453 -12.81676 -12.62111 -12.30255 -11.71514 -11.60728 -11.25912 -11.07072 -10.76347 -10.45440 -10.39615 -9.92589 -9.79701 -9.68704 -9.32469 -8.94491 -8.52849 -7.59356 -6.50134 -5.98361 -3.99712 2.39105 2.52858 3.03134 3.31324 3.32426 3.44744 3.62837 4.13865 4.28218 4.61856 4.96588 5.24946 5.41374 5.55636 5.62360 5.73356 5.82096 6.13970 6.23116 6.27986 6.32977 6.45546 6.62034 6.74157 6.89694 6.93675 7.18257 7.48392 7.90738 8.03563 8.64182 9.13590 9.42072 10.57709 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.022916 B = 0.014042 C = 0.010499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.536806 B = 1993.476888 C = 2666.309773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.051 3.949 3 Si 0.853 3.147 4 H -0.259 1.259 5 H -0.297 1.297 6 H -0.237 1.237 7 C -0.321 4.321 8 H 0.107 0.893 9 N -0.486 5.486 10 C 0.405 3.595 11 O -0.479 6.479 12 C -0.366 4.366 13 C -0.015 4.015 14 C -0.177 4.177 15 C -0.177 4.177 16 S -0.017 6.017 17 C 0.097 3.903 18 C -0.186 4.186 19 C -0.191 4.191 20 H 0.275 0.725 21 H 0.404 0.596 22 H 0.065 0.935 23 H 0.063 0.937 24 H 0.121 0.879 25 H 0.148 0.852 26 H 0.117 0.883 27 H 0.103 0.897 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.532 -1.085 -1.223 9.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.155 4.155 3 Si 0.678 3.322 4 H -0.184 1.184 5 H -0.225 1.225 6 H -0.160 1.160 7 C -0.447 4.447 8 H 0.124 0.876 9 N -0.195 5.195 10 C 0.249 3.751 11 O -0.282 6.282 12 C -0.487 4.487 13 C -0.054 4.054 14 C -0.208 4.208 15 C -0.308 4.308 16 S 0.230 5.770 17 C -0.010 4.010 18 C -0.224 4.224 19 C -0.230 4.230 20 H 0.085 0.915 21 H 0.260 0.740 22 H 0.083 0.917 23 H 0.081 0.919 24 H 0.139 0.861 25 H 0.166 0.834 26 H 0.134 0.866 27 H 0.121 0.879 28 H 0.104 0.896 29 H 0.105 0.895 30 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 9.665 -1.436 -0.284 9.775 hybrid contribution -0.235 1.589 -1.011 1.898 sum 9.430 0.153 -1.295 9.520 Atomic orbital electron populations 1.69975 1.05909 1.28275 1.46376 1.25390 0.95540 0.98560 0.95973 0.87091 0.81647 0.83000 0.80502 1.18404 1.22473 1.16031 1.18936 0.84384 0.96520 1.44857 0.87585 1.42213 1.09016 1.32360 1.35923 1.16678 0.86920 0.89220 0.82325 1.84973 1.31800 1.70234 1.41161 1.20987 1.01227 1.20351 1.06157 1.18817 0.91584 0.97024 0.97960 1.22501 0.97961 1.02429 0.97888 1.24991 1.02711 1.02981 1.00099 1.83870 1.09248 1.53682 1.30237 1.21446 0.94461 0.93300 0.91771 1.23214 1.01241 0.92710 1.05276 1.23202 1.00907 1.01991 0.96918 0.91523 0.74037 0.91652 0.91867 0.86118 0.83402 0.86550 0.87858 0.89559 0.89535 0.88507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.98 13.98 55.46 0.78 -23.21 16 2 C 0.05 1.35 4.59 -17.51 -0.08 1.27 16 3 Si 0.85 21.42 24.18 -169.99 -4.11 17.31 16 4 H -0.26 -6.56 6.45 56.52 0.36 -6.20 16 5 H -0.30 -7.63 7.11 56.52 0.40 -7.23 16 6 H -0.24 -6.16 6.66 56.52 0.38 -5.78 16 7 C -0.32 -8.06 8.61 -15.20 -0.13 -8.20 16 8 H 0.11 2.80 6.27 -52.48 -0.33 2.47 16 9 N -0.49 -11.04 2.75 -108.81 -0.30 -11.34 16 10 C 0.41 9.21 3.91 -16.12 -0.06 9.14 16 11 O -0.48 -10.66 11.29 -19.35 -0.22 -10.88 16 12 C -0.37 -7.96 5.01 -35.65 -0.18 -8.14 16 13 C -0.01 -0.29 6.00 -29.75 -0.18 -0.47 16 14 C -0.18 -2.96 10.32 -36.65 -0.38 -3.34 16 15 C -0.18 -2.95 11.12 29.20 0.32 -2.62 16 16 S -0.02 -0.34 19.50 -107.50 -2.10 -2.44 16 17 C 0.10 1.91 4.39 -67.93 -0.30 1.61 16 18 C -0.19 -3.28 9.86 -26.73 -0.26 -3.54 16 19 C -0.19 -3.48 9.58 -26.73 -0.26 -3.73 16 20 H 0.27 7.26 8.32 -40.82 -0.34 6.93 16 21 H 0.40 8.59 7.53 45.56 0.34 8.93 16 22 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 23 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 24 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 25 H 0.15 1.99 8.06 -52.48 -0.42 1.57 16 26 H 0.12 2.20 7.36 -51.93 -0.38 1.82 16 27 H 0.10 1.99 6.24 -51.93 -0.32 1.67 16 28 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 30 H 0.10 1.98 8.14 -51.93 -0.42 1.56 16 LS Contribution 257.86 15.07 3.89 3.89 Total: -1.00 -27.84 257.86 -6.42 -34.26 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -2.85 Total: 10.43 kcal Atomic # 6 Polarization: -16.51 SS G_CDS: -1.50 Total: -18.01 kcal Atomic # 7 Polarization: -35.02 SS G_CDS: 0.48 Total: -34.55 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: -0.22 Total: -10.88 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.11 Total: 17.31 kcal Atomic # 16 Polarization: -0.34 SS G_CDS: -2.10 Total: -2.44 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -27.84 -6.42 -34.26 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725538812.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.260 kcal (2) G-P(sol) polarization free energy of solvation -27.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds