Wall clock time and date at job start Mon Mar 30 2020 05:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31961 * 1 3 3 Si 1.86802 * 120.00239 * 2 1 4 4 H 1.48503 * 109.47197 * 271.09786 * 3 2 1 5 5 H 1.48498 * 109.47262 * 31.09594 * 3 2 1 6 6 H 1.48495 * 109.47042 * 151.09987 * 3 2 1 7 7 C 1.38191 * 120.00000 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99870 * 339.75899 * 7 2 1 9 9 N 1.37135 * 120.00396 * 159.75969 * 7 2 1 10 10 C 1.38159 * 119.99898 * 329.50891 * 9 7 2 11 11 O 1.35876 * 120.00011 * 320.34081 * 10 9 7 12 12 C 1.34193 * 120.00019 * 140.34121 * 10 9 7 13 13 C 1.50881 * 127.57013 * 178.57506 * 12 10 9 14 14 C 1.49007 * 111.27654 * 180.02562 * 13 12 10 15 15 C 1.30334 * 117.18616 * 359.88763 * 14 13 12 16 16 S 1.76459 * 109.80428 * 0.10744 * 15 14 13 17 17 C 1.46496 * 120.00056 * 149.50908 * 9 7 2 18 18 C 1.53001 * 117.50295 * 13.92885 * 17 9 7 19 19 C 1.53002 * 60.00043 * 252.51085 * 18 17 9 20 20 H 0.97006 * 119.99738 * 359.97438 * 1 2 3 21 21 H 0.96698 * 114.00262 * 1.64248 * 11 10 9 22 22 H 1.09004 * 109.11095 * 300.52098 * 13 12 10 23 23 H 1.09001 * 109.11181 * 59.62091 * 13 12 10 24 24 H 1.08000 * 121.47053 * 179.97438 * 14 13 12 25 25 H 1.08004 * 125.12175 * 180.02562 * 15 14 13 26 26 H 1.09001 * 115.55198 * 159.63356 * 17 9 7 27 27 H 1.08998 * 117.49489 * 359.97438 * 18 17 9 28 28 H 1.08997 * 117.50401 * 145.01843 * 18 17 9 29 29 H 1.09003 * 117.49400 * 252.51319 * 19 18 17 30 30 H 1.08997 * 117.50260 * 107.48553 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3196 0.0000 0.0000 3 14 2.2537 1.6177 0.0000 4 1 2.4780 2.0598 -1.3998 5 1 1.4630 2.6459 0.7231 6 1 3.5626 1.4335 0.6766 7 6 2.0106 -1.1968 -0.0005 8 1 1.5205 -2.1034 0.3227 9 7 3.3184 -1.2333 -0.4114 10 6 3.7678 -0.3413 -1.3659 11 8 2.9776 -0.0240 -2.4248 12 6 4.9847 0.2117 -1.2474 13 6 5.6538 1.1751 -2.1964 14 6 7.0088 1.5598 -1.7102 15 6 7.4082 1.0373 -0.5849 16 16 6.1567 -0.0284 0.0569 17 6 4.2390 -2.2182 0.1618 18 6 3.6305 -3.3758 0.9560 19 6 4.3748 -2.2555 1.6854 20 1 -0.4850 0.8401 0.0004 21 1 2.1107 -0.4522 -2.4109 22 1 5.7453 0.7057 -3.1759 23 1 5.0400 2.0714 -2.2866 24 1 7.6338 2.2436 -2.2652 25 1 8.3625 1.2268 -0.1160 26 1 5.1315 -2.4267 -0.4282 27 1 2.5451 -3.4042 1.0524 28 1 4.1224 -4.3461 0.8885 29 1 5.3565 -2.4888 2.0975 30 1 3.7791 -1.5471 2.2611 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725538812.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:59 Heat of formation + Delta-G solvation = 26.750659 kcal Electronic energy + Delta-G solvation = -15553.091913 eV Core-core repulsion = 13055.543243 eV Total energy + Delta-G solvation = -2497.548670 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.64916 -38.20598 -37.04189 -35.08517 -33.71013 -31.19677 -27.62614 -25.85521 -23.24829 -22.96157 -21.75286 -20.73880 -20.09305 -18.04672 -17.67584 -17.43509 -15.94333 -15.84872 -15.56573 -15.34953 -14.99096 -14.54733 -14.40894 -14.01744 -13.34313 -13.12345 -12.95811 -12.78658 -12.42600 -12.20983 -12.14161 -11.71089 -11.37757 -11.12886 -10.96619 -10.76603 -10.18982 -9.28849 -8.54417 -7.61575 -5.96596 1.00269 1.03654 1.28059 1.33245 1.42883 1.59288 1.80790 2.22869 2.46921 2.84398 3.25785 3.55983 4.01102 4.12543 4.20855 4.24680 4.35143 4.73022 4.78730 4.80899 4.89551 5.06000 5.16172 5.22898 5.42534 5.50226 5.59312 5.61202 5.95235 6.23957 6.74664 7.24020 7.55750 8.57845 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.022916 B = 0.014042 C = 0.010499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.536806 B = 1993.476888 C = 2666.309773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.022 3.978 3 Si 0.900 3.100 4 H -0.265 1.265 5 H -0.308 1.308 6 H -0.249 1.249 7 C -0.299 4.299 8 H 0.090 0.910 9 N -0.499 5.499 10 C 0.382 3.618 11 O -0.485 6.485 12 C -0.366 4.366 13 C -0.025 4.025 14 C -0.174 4.174 15 C -0.172 4.172 16 S -0.038 6.038 17 C 0.079 3.921 18 C -0.171 4.171 19 C -0.181 4.181 20 H 0.274 0.726 21 H 0.405 0.595 22 H 0.074 0.926 23 H 0.052 0.948 24 H 0.160 0.840 25 H 0.187 0.813 26 H 0.127 0.873 27 H 0.082 0.918 28 H 0.122 0.878 29 H 0.115 0.885 30 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.262 -1.105 -1.287 12.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.180 4.180 3 Si 0.727 3.273 4 H -0.190 1.190 5 H -0.236 1.236 6 H -0.173 1.173 7 C -0.426 4.426 8 H 0.107 0.893 9 N -0.209 5.209 10 C 0.227 3.773 11 O -0.288 6.288 12 C -0.486 4.486 13 C -0.064 4.064 14 C -0.204 4.204 15 C -0.303 4.303 16 S 0.208 5.792 17 C -0.027 4.027 18 C -0.209 4.209 19 C -0.221 4.221 20 H 0.084 0.916 21 H 0.260 0.740 22 H 0.092 0.908 23 H 0.070 0.930 24 H 0.177 0.823 25 H 0.204 0.796 26 H 0.144 0.856 27 H 0.100 0.900 28 H 0.141 0.859 29 H 0.133 0.867 30 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 12.436 -1.453 -0.356 12.525 hybrid contribution -0.926 1.564 -1.039 2.094 sum 11.509 0.111 -1.395 11.594 Atomic orbital electron populations 1.70022 1.06685 1.28420 1.49441 1.25647 0.95652 0.99802 0.96935 0.86392 0.80060 0.81403 0.79478 1.19037 1.23642 1.17252 1.18808 0.85479 0.95455 1.42905 0.89284 1.42206 1.08669 1.33286 1.36786 1.16958 0.87682 0.90016 0.82664 1.84945 1.31879 1.70437 1.41498 1.21544 1.01082 1.18984 1.07036 1.18996 0.93124 0.96107 0.98214 1.22658 0.96683 1.02800 0.98209 1.25308 1.03157 1.01906 0.99894 1.83890 1.09905 1.55254 1.30127 1.21624 0.94736 0.93661 0.92646 1.23252 1.00257 0.93880 1.03540 1.23161 1.01913 1.01520 0.95461 0.91635 0.73975 0.90800 0.92962 0.82294 0.79589 0.85560 0.89982 0.85946 0.86690 0.91207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.19 13.98 21.55 0.30 -50.89 16 2 C 0.02 1.16 4.59 84.66 0.39 1.55 16 3 Si 0.90 45.28 24.18 68.60 1.66 46.94 16 4 H -0.26 -13.39 6.45 99.48 0.64 -12.75 16 5 H -0.31 -15.83 7.11 99.48 0.71 -15.12 16 6 H -0.25 -12.81 6.66 99.48 0.66 -12.15 16 7 C -0.30 -15.25 8.61 83.85 0.72 -14.53 16 8 H 0.09 4.82 6.27 -2.91 -0.02 4.80 16 9 N -0.50 -22.56 2.75 -607.73 -1.67 -24.23 16 10 C 0.38 17.19 3.91 82.77 0.32 17.52 16 11 O -0.48 -21.65 11.29 -92.16 -1.04 -22.69 16 12 C -0.37 -15.36 5.01 24.82 0.12 -15.24 16 13 C -0.03 -0.93 6.00 28.64 0.17 -0.76 16 14 C -0.17 -5.12 10.32 25.81 0.27 -4.85 16 15 C -0.17 -5.02 11.12 68.47 0.76 -4.26 16 16 S -0.04 -1.40 19.50 -56.49 -1.10 -2.50 16 17 C 0.08 3.01 4.39 44.99 0.20 3.21 16 18 C -0.17 -5.74 9.86 30.60 0.30 -5.44 16 19 C -0.18 -6.32 9.58 30.60 0.29 -6.02 16 20 H 0.27 14.87 8.32 -92.70 -0.77 14.10 16 21 H 0.40 17.57 7.53 -74.06 -0.56 17.01 16 22 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 23 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 24 H 0.16 3.51 8.06 -2.91 -0.02 3.49 16 25 H 0.19 3.99 8.06 -2.91 -0.02 3.97 16 26 H 0.13 4.53 7.36 -2.39 -0.02 4.51 16 27 H 0.08 3.13 6.24 -2.39 -0.01 3.12 16 28 H 0.12 3.20 8.14 -2.39 -0.02 3.18 16 29 H 0.11 3.32 8.14 -2.39 -0.02 3.30 16 30 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 Total: -1.00 -59.53 257.86 2.19 -57.34 By element: Atomic # 1 Polarization: 24.39 SS G_CDS: 0.49 Total: 24.88 kcal Atomic # 6 Polarization: -32.38 SS G_CDS: 3.55 Total: -28.83 kcal Atomic # 7 Polarization: -73.76 SS G_CDS: -1.37 Total: -75.13 kcal Atomic # 8 Polarization: -21.65 SS G_CDS: -1.04 Total: -22.69 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.66 Total: 46.94 kcal Atomic # 16 Polarization: -1.40 SS G_CDS: -1.10 Total: -2.50 kcal Total: -59.53 2.19 -57.34 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725538812.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.091 kcal (2) G-P(sol) polarization free energy of solvation -59.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds