Wall clock time and date at job start Mon Mar 30 2020 05:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00391 * 3 2 1 5 5 H 1.48506 * 109.46545 * 210.00141 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99852 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 180.02562 * 7 2 1 10 10 H 1.09000 * 109.46830 * 299.99601 * 9 7 2 11 11 O 1.42895 * 109.47266 * 59.99864 * 9 7 2 12 12 C 1.50699 * 109.46824 * 180.02562 * 9 7 2 13 13 C 1.32912 * 125.21258 * 99.71545 * 12 9 7 14 14 C 1.39214 * 115.70313 * 179.78860 * 13 12 9 15 15 C 1.34630 * 113.66481 * 0.50308 * 14 13 12 16 16 S 1.75730 * 125.20428 * 280.01869 * 12 9 7 17 17 C 1.51406 * 124.78588 * 179.74016 * 15 14 13 18 18 C 1.53160 * 108.70343 * 343.67168 * 17 15 14 19 19 C 1.53155 * 108.96645 * 49.66654 * 18 17 15 20 20 C 1.52280 * 123.50526 * 180.23332 * 14 13 12 21 21 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 22 22 H 0.96698 * 114.00355 * 60.00228 * 11 9 7 23 23 H 1.07995 * 122.14888 * 359.97438 * 13 12 9 24 24 H 1.08998 * 109.60396 * 103.44252 * 17 15 14 25 25 H 1.09006 * 109.59682 * 223.90773 * 17 15 14 26 26 H 1.08996 * 109.55978 * 169.51254 * 18 17 15 27 27 H 1.09003 * 109.55866 * 289.82123 * 18 17 15 28 28 H 1.08994 * 109.49419 * 49.38846 * 19 18 17 29 29 H 1.08990 * 109.50065 * 169.46111 * 19 18 17 30 30 H 1.09000 * 109.58063 * 43.01975 * 20 14 13 31 31 H 1.08997 * 109.58125 * 282.61075 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4400 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 1 3.8751 -0.6798 -0.8895 11 8 3.9874 -0.5213 1.1674 12 6 4.0137 -2.6150 -0.0013 13 6 4.4423 -3.2753 -1.0723 14 6 4.8675 -4.5815 -0.8461 15 6 4.7625 -4.9691 0.4389 16 16 4.1153 -3.6550 1.4115 17 6 5.1471 -6.3366 0.9628 18 6 5.2711 -7.2994 -0.2218 19 6 6.1536 -6.6562 -1.2957 20 6 5.3968 -5.4951 -1.9434 21 1 -0.4850 0.8401 0.0004 22 1 3.7018 -0.9253 1.9982 23 1 4.4624 -2.8263 -2.0543 24 1 6.1023 -6.2732 1.4840 25 1 4.3780 -6.6956 1.6468 26 1 5.7246 -8.2325 0.1122 27 1 4.2822 -7.4998 -0.6342 28 1 7.0698 -6.2832 -0.8381 29 1 6.4018 -7.3979 -2.0548 30 1 6.0715 -4.9352 -2.5910 31 1 4.5636 -5.8834 -2.5289 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535672770.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:11 Heat of formation + Delta-G solvation = -39.736885 kcal Electronic energy + Delta-G solvation = -14618.779286 eV Core-core repulsion = 12183.773411 eV Total energy + Delta-G solvation = -2435.005875 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.81202 -36.55722 -34.43061 -32.36288 -30.64793 -29.51100 -26.72074 -23.43475 -23.35420 -21.39889 -20.06227 -17.88399 -17.19716 -16.76572 -15.03794 -14.81626 -14.62958 -14.35411 -13.76131 -13.44242 -13.06366 -12.82748 -12.53191 -12.28327 -12.15773 -11.75343 -11.49175 -10.94452 -10.83977 -10.72388 -10.56100 -10.51265 -10.10399 -9.88817 -9.41538 -8.85850 -8.73568 -7.77554 -7.63373 -6.20733 -4.34127 1.63348 2.20736 2.66057 3.27457 3.39412 3.43307 3.55011 4.42054 4.82527 4.90794 4.91298 5.07275 5.28654 5.36513 5.59033 5.62543 5.73399 5.77153 5.80374 5.91517 5.98962 6.03311 6.15774 6.30335 6.32562 6.64403 6.91177 7.03686 7.21276 7.40958 8.18657 8.67122 8.86632 9.39565 10.89067 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.045906 B = 0.006663 C = 0.006513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.797504 B = 4201.595780 C = 4298.375661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.085 3.915 3 Si 0.911 3.089 4 H -0.276 1.276 5 H -0.267 1.267 6 H -0.302 1.302 7 C -0.556 4.556 8 H 0.078 0.922 9 C 0.250 3.750 10 H 0.081 0.919 11 O -0.579 6.579 12 C -0.132 4.132 13 C -0.165 4.165 14 C -0.093 4.093 15 C -0.213 4.213 16 S 0.088 5.912 17 C -0.040 4.040 18 C -0.114 4.114 19 C -0.118 4.118 20 C -0.055 4.055 21 H 0.268 0.732 22 H 0.361 0.639 23 H 0.131 0.869 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.050 -11.686 -0.341 16.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.121 4.121 3 Si 0.740 3.260 4 H -0.202 1.202 5 H -0.192 1.192 6 H -0.230 1.230 7 C -0.594 4.594 8 H 0.096 0.904 9 C 0.191 3.809 10 H 0.098 0.902 11 O -0.385 6.385 12 C -0.249 4.249 13 C -0.193 4.193 14 C -0.106 4.106 15 C -0.329 4.329 16 S 0.355 5.645 17 C -0.079 4.079 18 C -0.153 4.153 19 C -0.155 4.155 20 C -0.095 4.095 21 H 0.077 0.923 22 H 0.208 0.792 23 H 0.149 0.851 24 H 0.089 0.911 25 H 0.089 0.911 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 10.801 -10.986 0.770 15.426 hybrid contribution 0.202 0.378 -1.143 1.221 sum 11.004 -10.608 -0.374 15.289 Atomic orbital electron populations 1.69943 1.06576 1.27652 1.48031 1.25007 0.94750 0.99833 0.92479 0.86286 0.79249 0.81678 0.78778 1.20177 1.19197 1.22987 1.21411 0.88515 0.95235 1.54213 0.90405 1.18668 0.94063 0.81778 0.86347 0.90163 1.86439 1.77587 1.57961 1.16507 1.25547 1.02065 1.02147 0.95174 1.19762 1.05611 0.94351 0.99601 1.19469 1.02557 0.94754 0.93794 1.24536 1.11473 1.00014 0.96922 1.83869 1.63618 1.04427 1.12575 1.20162 1.00961 0.89404 0.97396 1.21556 1.00530 0.97463 0.95722 1.21526 0.98668 0.97289 0.98037 1.20489 0.99208 0.94627 0.95153 0.92281 0.79213 0.85112 0.91066 0.91093 0.91663 0.91567 0.91831 0.91840 0.91025 0.90940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.75 13.96 55.43 0.77 -25.98 16 2 C 0.08 2.43 5.47 -17.82 -0.10 2.34 16 3 Si 0.91 22.93 26.18 -169.99 -4.45 18.48 16 4 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.27 -6.63 6.54 56.52 0.37 -6.26 16 6 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 7 C -0.56 -15.58 9.33 -34.44 -0.32 -15.90 16 8 H 0.08 2.39 7.98 -52.49 -0.42 1.97 16 9 C 0.25 6.07 2.74 -29.03 -0.08 5.99 16 10 H 0.08 1.98 7.18 -51.93 -0.37 1.61 16 11 O -0.58 -13.59 10.98 -35.23 -0.39 -13.97 16 12 C -0.13 -2.82 5.40 -36.15 -0.20 -3.01 16 13 C -0.16 -3.21 9.85 -41.06 -0.40 -3.61 16 14 C -0.09 -1.56 5.78 -104.75 -0.61 -2.16 16 15 C -0.21 -3.50 6.35 -35.24 -0.22 -3.73 16 16 S 0.09 1.64 22.62 -107.50 -2.43 -0.79 16 17 C -0.04 -0.51 6.26 -27.45 -0.17 -0.68 16 18 C -0.11 -1.22 5.94 -26.57 -0.16 -1.38 16 19 C -0.12 -1.26 5.88 -26.66 -0.16 -1.42 16 20 C -0.06 -0.72 6.15 -27.11 -0.17 -0.88 16 21 H 0.27 7.55 8.31 -40.82 -0.34 7.22 16 22 H 0.36 7.67 8.45 45.56 0.38 8.05 16 23 H 0.13 2.40 8.06 -52.49 -0.42 1.97 16 24 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.74 8.11 -51.93 -0.42 0.32 16 28 H 0.06 0.69 8.10 -51.93 -0.42 0.27 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 268.67 15.07 4.05 4.05 Total: -1.00 -30.73 268.67 -8.40 -39.13 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -3.37 Total: 3.52 kcal Atomic # 6 Polarization: -21.86 SS G_CDS: -2.58 Total: -24.44 kcal Atomic # 7 Polarization: -26.75 SS G_CDS: 0.77 Total: -25.98 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: -0.39 Total: -13.97 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -4.45 Total: 18.48 kcal Atomic # 16 Polarization: 1.64 SS G_CDS: -2.43 Total: -0.79 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -30.73 -8.40 -39.13 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535672770.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.607 kcal (2) G-P(sol) polarization free energy of solvation -30.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds