Wall clock time and date at job start Mon Mar 30 2020 05:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00391 * 3 2 1 5 5 H 1.48506 * 109.46545 * 210.00141 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99852 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 180.02562 * 7 2 1 10 10 H 1.09000 * 109.46830 * 299.99601 * 9 7 2 11 11 O 1.42895 * 109.47266 * 59.99864 * 9 7 2 12 12 C 1.50699 * 109.46824 * 180.02562 * 9 7 2 13 13 C 1.32912 * 125.21258 * 99.71545 * 12 9 7 14 14 C 1.39214 * 115.70313 * 179.78860 * 13 12 9 15 15 C 1.34630 * 113.66481 * 0.50308 * 14 13 12 16 16 S 1.75730 * 125.20428 * 280.01869 * 12 9 7 17 17 C 1.51406 * 124.78588 * 179.74016 * 15 14 13 18 18 C 1.53160 * 108.70343 * 343.67168 * 17 15 14 19 19 C 1.53155 * 108.96645 * 49.66654 * 18 17 15 20 20 C 1.52280 * 123.50526 * 180.23332 * 14 13 12 21 21 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 22 22 H 0.96698 * 114.00355 * 60.00228 * 11 9 7 23 23 H 1.07995 * 122.14888 * 359.97438 * 13 12 9 24 24 H 1.08998 * 109.60396 * 103.44252 * 17 15 14 25 25 H 1.09006 * 109.59682 * 223.90773 * 17 15 14 26 26 H 1.08996 * 109.55978 * 169.51254 * 18 17 15 27 27 H 1.09003 * 109.55866 * 289.82123 * 18 17 15 28 28 H 1.08994 * 109.49419 * 49.38846 * 19 18 17 29 29 H 1.08990 * 109.50065 * 169.46111 * 19 18 17 30 30 H 1.09000 * 109.58063 * 43.01975 * 20 14 13 31 31 H 1.08997 * 109.58125 * 282.61075 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4400 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 1 3.8751 -0.6798 -0.8895 11 8 3.9874 -0.5213 1.1674 12 6 4.0137 -2.6150 -0.0013 13 6 4.4423 -3.2753 -1.0723 14 6 4.8675 -4.5815 -0.8461 15 6 4.7625 -4.9691 0.4389 16 16 4.1153 -3.6550 1.4115 17 6 5.1471 -6.3366 0.9628 18 6 5.2711 -7.2994 -0.2218 19 6 6.1536 -6.6562 -1.2957 20 6 5.3968 -5.4951 -1.9434 21 1 -0.4850 0.8401 0.0004 22 1 3.7018 -0.9253 1.9982 23 1 4.4624 -2.8263 -2.0543 24 1 6.1023 -6.2732 1.4840 25 1 4.3780 -6.6956 1.6468 26 1 5.7246 -8.2325 0.1122 27 1 4.2822 -7.4998 -0.6342 28 1 7.0698 -6.2832 -0.8381 29 1 6.4018 -7.3979 -2.0548 30 1 6.0715 -4.9352 -2.5910 31 1 4.5636 -5.8834 -2.5289 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535672770.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:10 Heat of formation + Delta-G solvation = -59.760687 kcal Electronic energy + Delta-G solvation = -14619.647583 eV Core-core repulsion = 12183.773411 eV Total energy + Delta-G solvation = -2435.874172 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.05356 -38.31222 -35.75069 -34.55689 -31.65780 -31.10956 -28.46310 -25.06116 -24.47230 -22.81265 -21.43061 -19.62816 -18.81031 -18.19864 -16.99446 -16.55225 -15.82053 -15.66948 -15.10060 -14.95822 -14.67133 -14.18215 -14.01359 -13.58939 -13.44655 -13.33131 -13.21540 -12.83559 -12.26209 -12.00932 -11.78758 -11.68277 -11.52525 -11.42467 -11.13556 -10.94669 -10.78027 -9.27201 -9.05661 -8.43324 -6.60574 0.18479 0.77172 1.20815 1.36817 1.39824 1.53803 1.83486 2.31485 2.89287 3.76555 3.84267 3.89296 4.06269 4.17324 4.32841 4.39271 4.58912 4.67667 4.85017 4.87331 4.92064 5.02547 5.07857 5.17998 5.25261 5.28180 5.47728 5.48970 5.57977 5.78309 5.99648 6.50617 6.87581 7.17404 8.70564 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.045906 B = 0.006663 C = 0.006513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.797504 B = 4201.595780 C = 4298.375661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.035 3.965 3 Si 0.972 3.028 4 H -0.272 1.272 5 H -0.261 1.261 6 H -0.295 1.295 7 C -0.557 4.557 8 H 0.037 0.963 9 C 0.260 3.740 10 H 0.074 0.926 11 O -0.580 6.580 12 C -0.181 4.181 13 C -0.159 4.159 14 C -0.110 4.110 15 C -0.197 4.197 16 S 0.077 5.923 17 C -0.044 4.044 18 C -0.111 4.111 19 C -0.114 4.114 20 C -0.055 4.055 21 H 0.272 0.728 22 H 0.370 0.630 23 H 0.134 0.866 24 H 0.089 0.911 25 H 0.077 0.923 26 H 0.095 0.905 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.174 -13.169 -0.563 18.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.166 4.166 3 Si 0.799 3.201 4 H -0.197 1.197 5 H -0.186 1.186 6 H -0.222 1.222 7 C -0.595 4.595 8 H 0.055 0.945 9 C 0.201 3.799 10 H 0.092 0.908 11 O -0.387 6.387 12 C -0.298 4.298 13 C -0.189 4.189 14 C -0.122 4.122 15 C -0.314 4.314 16 S 0.343 5.657 17 C -0.083 4.083 18 C -0.150 4.150 19 C -0.152 4.152 20 C -0.094 4.094 21 H 0.081 0.919 22 H 0.218 0.782 23 H 0.152 0.848 24 H 0.107 0.893 25 H 0.096 0.904 26 H 0.113 0.887 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.108 0.892 30 H 0.099 0.901 31 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 12.930 -12.476 0.553 17.976 hybrid contribution -0.457 0.700 -1.063 1.352 sum 12.473 -11.776 -0.510 17.161 Atomic orbital electron populations 1.70050 1.08160 1.28752 1.49842 1.25807 0.95390 1.03214 0.92189 0.85319 0.78136 0.77700 0.78961 1.19710 1.18558 1.22228 1.21574 0.90806 0.93552 1.53529 0.94481 1.18295 0.91453 0.83928 0.86233 0.90849 1.86361 1.77323 1.58180 1.16806 1.25240 1.05527 1.01692 0.97354 1.20103 1.04027 0.95519 0.99219 1.19852 1.02808 0.94283 0.95268 1.25147 1.09178 1.00659 0.96398 1.83764 1.64261 1.05345 1.12291 1.20405 1.01926 0.87353 0.98622 1.21593 1.00626 0.98025 0.94760 1.21543 0.98158 0.96851 0.98609 1.20618 0.99777 0.94875 0.94148 0.91901 0.78200 0.84780 0.89303 0.90402 0.88673 0.92173 0.91663 0.89178 0.90054 0.90464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.63 13.96 21.45 0.30 -57.34 16 2 C 0.04 2.06 5.47 84.66 0.46 2.52 16 3 Si 0.97 47.60 26.18 68.60 1.80 49.39 16 4 H -0.27 -13.03 7.11 99.48 0.71 -12.33 16 5 H -0.26 -12.43 6.54 99.48 0.65 -11.78 16 6 H -0.29 -13.98 7.11 99.48 0.71 -13.28 16 7 C -0.56 -32.21 9.33 25.60 0.24 -31.97 16 8 H 0.04 2.39 7.98 -2.91 -0.02 2.37 16 9 C 0.26 12.80 2.74 29.10 0.08 12.88 16 10 H 0.07 3.66 7.18 -2.39 -0.02 3.65 16 11 O -0.58 -27.14 10.98 -148.98 -1.64 -28.78 16 12 C -0.18 -7.84 5.40 24.51 0.13 -7.71 16 13 C -0.16 -6.16 9.85 21.33 0.21 -5.95 16 14 C -0.11 -3.53 5.78 -19.95 -0.12 -3.65 16 15 C -0.20 -6.15 6.35 25.08 0.16 -5.99 16 16 S 0.08 2.84 22.62 -56.49 -1.28 1.56 16 17 C -0.04 -0.97 6.26 30.13 0.19 -0.78 16 18 C -0.11 -1.93 5.94 30.70 0.18 -1.75 16 19 C -0.11 -1.97 5.88 30.64 0.18 -1.79 16 20 C -0.05 -1.27 6.15 30.35 0.19 -1.08 16 21 H 0.27 15.67 8.31 -92.70 -0.77 14.90 16 22 H 0.37 15.81 8.45 -74.06 -0.63 15.19 16 23 H 0.13 4.92 8.06 -2.91 -0.02 4.90 16 24 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 25 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 26 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.06 1.14 8.11 -2.39 -0.02 1.12 16 28 H 0.06 1.14 8.10 -2.39 -0.02 1.12 16 29 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -67.16 268.67 1.54 -65.63 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: 0.45 Total: 14.81 kcal Atomic # 6 Polarization: -47.19 SS G_CDS: 1.91 Total: -45.28 kcal Atomic # 7 Polarization: -57.63 SS G_CDS: 0.30 Total: -57.34 kcal Atomic # 8 Polarization: -27.14 SS G_CDS: -1.64 Total: -28.78 kcal Atomic # 14 Polarization: 47.60 SS G_CDS: 1.80 Total: 49.39 kcal Atomic # 16 Polarization: 2.84 SS G_CDS: -1.28 Total: 1.56 kcal Total: -67.16 1.54 -65.63 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535672770.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.865 kcal (2) G-P(sol) polarization free energy of solvation -67.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds