Wall clock time and date at job start Mon Mar 30 2020 05:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 120.00376 * 2 1 4 4 H 1.48491 * 109.47312 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46948 * 300.00094 * 3 2 1 6 6 H 1.48500 * 109.46809 * 60.00013 * 3 2 1 7 7 C 1.37877 * 119.99723 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99852 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00129 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.46959 * 60.00169 * 9 7 2 11 11 O 1.42898 * 109.46964 * 300.00198 * 9 7 2 12 12 C 1.50703 * 109.47227 * 180.02562 * 9 7 2 13 13 C 1.32913 * 122.14856 * 95.02261 * 12 9 7 14 14 S 1.75720 * 109.58642 * 179.97438 * 13 12 9 15 15 C 1.75841 * 91.07923 * 359.97438 * 14 13 12 16 16 C 1.34635 * 109.96466 * 359.76483 * 15 14 13 17 17 C 1.52283 * 122.82366 * 179.66910 * 16 15 14 18 18 C 1.52982 * 108.85954 * 343.01647 * 17 16 15 19 19 C 1.53150 * 109.30526 * 50.97203 * 18 17 16 20 20 C 1.51406 * 125.24569 * 180.02562 * 15 14 13 21 21 H 0.97003 * 119.99231 * 359.97438 * 1 2 3 22 22 H 0.96698 * 113.99898 * 299.99550 * 11 9 7 23 23 H 1.07999 * 125.20681 * 359.97438 * 13 12 9 24 24 H 1.09001 * 109.72025 * 223.09928 * 17 16 15 25 25 H 1.08996 * 109.49280 * 102.79250 * 17 16 15 26 26 H 1.09001 * 109.49729 * 291.02377 * 18 17 16 27 27 H 1.09001 * 109.49840 * 170.92129 * 18 17 16 28 28 H 1.08994 * 109.55691 * 169.59247 * 19 18 17 29 29 H 1.09002 * 109.55410 * 49.27379 * 19 18 17 30 30 H 1.09001 * 109.59588 * 283.45386 * 20 15 14 31 31 H 1.09004 * 109.59773 * 43.92536 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8906 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6240 -2.5567 -0.8903 11 8 0.4299 -2.5750 1.1665 12 6 2.2303 -3.6447 -0.0005 13 6 2.6149 -4.2463 1.1205 14 16 3.7543 -5.5287 0.7397 15 6 3.6407 -5.1653 -0.9770 16 6 2.7849 -4.1450 -1.1752 17 6 2.4733 -3.5856 -2.5569 18 6 3.5554 -4.0493 -3.5337 19 6 3.7256 -5.5669 -3.4177 20 6 4.3872 -5.8924 -2.0753 21 1 -0.4849 0.8401 0.0004 22 1 0.9223 -2.5299 1.9975 23 1 2.2787 -3.9867 2.1134 24 1 2.4587 -2.4963 -2.5179 25 1 1.5015 -3.9524 -2.8872 26 1 4.4981 -3.5580 -3.2925 27 1 3.2610 -3.7930 -4.5514 28 1 4.3551 -5.9267 -4.2315 29 1 2.7491 -6.0485 -3.4692 30 1 5.4263 -5.5636 -2.0907 31 1 4.3439 -6.9670 -1.8973 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535743357.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:32 Heat of formation + Delta-G solvation = -41.338442 kcal Electronic energy + Delta-G solvation = -14999.666065 eV Core-core repulsion = 12564.590742 eV Total energy + Delta-G solvation = -2435.075324 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.91791 -36.17290 -33.76831 -32.18422 -30.48784 -28.38311 -27.11987 -23.75201 -22.81695 -21.73440 -19.33989 -17.50820 -17.01776 -16.69136 -14.98297 -14.63670 -14.37327 -13.89824 -13.56824 -13.35041 -13.01645 -12.77592 -12.41432 -11.91972 -11.48947 -11.37761 -11.20473 -10.96636 -10.79730 -10.66757 -10.58412 -10.31124 -10.12754 -9.93910 -9.18111 -8.66723 -8.34700 -7.77245 -7.48659 -6.04098 -4.22647 1.68239 2.27315 2.64586 3.24698 3.32894 3.36535 3.50243 4.38378 4.96917 5.10259 5.14429 5.21930 5.50433 5.54915 5.74703 5.82819 5.88812 5.98211 6.14104 6.20079 6.26905 6.34647 6.42523 6.59999 6.65342 6.83254 7.09293 7.25947 7.73288 7.83154 8.11559 8.80406 9.30373 9.53083 10.99061 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.026491 B = 0.008681 C = 0.007484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.696304 B = 3224.800488 C = 3740.503058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.079 3.921 3 Si 0.889 3.111 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.558 4.558 8 H 0.057 0.943 9 C 0.277 3.723 10 H 0.069 0.931 11 O -0.561 6.561 12 C -0.085 4.085 13 C -0.217 4.217 14 S 0.026 5.974 15 C -0.196 4.196 16 C -0.074 4.074 17 C -0.060 4.060 18 C -0.118 4.118 19 C -0.114 4.114 20 C -0.040 4.040 21 H 0.261 0.739 22 H 0.345 0.655 23 H 0.157 0.843 24 H 0.093 0.907 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.145 -9.354 -4.096 12.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.127 4.127 3 Si 0.717 3.283 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.596 4.596 8 H 0.076 0.924 9 C 0.217 3.783 10 H 0.087 0.913 11 O -0.363 6.363 12 C -0.097 4.097 13 C -0.351 4.351 14 S 0.292 5.708 15 C -0.312 4.312 16 C -0.087 4.087 17 C -0.099 4.099 18 C -0.156 4.156 19 C -0.153 4.153 20 C -0.079 4.079 21 H 0.071 0.929 22 H 0.189 0.811 23 H 0.174 0.826 24 H 0.111 0.889 25 H 0.089 0.911 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.313 -10.377 -3.621 13.202 hybrid contribution 0.204 2.033 -0.173 2.051 sum 7.517 -8.344 -3.794 11.854 Atomic orbital electron populations 1.70089 1.05892 1.26453 1.47039 1.25044 0.94711 0.99074 0.93852 0.86597 0.80306 0.83699 0.77747 1.19646 1.20801 1.20846 1.21523 0.93205 0.90381 1.54472 0.92438 1.18252 0.86289 0.87316 0.86398 0.91335 1.86599 1.38101 1.96261 1.15380 1.20301 0.99729 0.98609 0.91040 1.24810 1.05425 1.02453 1.02439 1.83624 1.47758 1.37888 1.01517 1.24509 1.06540 1.03953 0.96226 1.19495 0.97519 0.95540 0.96151 1.20567 0.97907 1.02011 0.89447 1.21553 0.99686 0.95273 0.99077 1.21568 1.00869 0.96970 0.95853 1.20181 0.97949 0.98364 0.91418 0.92932 0.81106 0.82582 0.88883 0.91097 0.91847 0.91767 0.91793 0.91667 0.91032 0.91329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.91 12.84 55.43 0.71 -24.20 16 2 C 0.08 2.18 5.40 -17.82 -0.10 2.09 16 3 Si 0.89 21.00 29.54 -169.99 -5.02 15.97 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.56 -15.10 8.61 -34.44 -0.30 -15.40 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.28 7.05 2.68 -29.03 -0.08 6.97 16 10 H 0.07 1.88 7.65 -51.93 -0.40 1.49 16 11 O -0.56 -14.54 12.43 -35.23 -0.44 -14.98 16 12 C -0.09 -1.87 4.91 -106.10 -0.52 -2.39 16 13 C -0.22 -4.32 10.34 28.89 0.30 -4.02 16 14 S 0.03 0.45 23.31 -107.50 -2.51 -2.06 16 15 C -0.20 -3.39 6.35 -35.24 -0.22 -3.62 16 16 C -0.07 -1.45 5.78 -104.75 -0.60 -2.06 16 17 C -0.06 -1.06 5.31 -27.11 -0.14 -1.20 16 18 C -0.12 -1.64 5.89 -26.66 -0.16 -1.80 16 19 C -0.11 -1.40 5.94 -26.57 -0.16 -1.56 16 20 C -0.04 -0.54 6.26 -27.45 -0.17 -0.71 16 21 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 22 H 0.34 7.91 7.65 45.56 0.35 8.26 16 23 H 0.16 2.89 6.94 -52.49 -0.36 2.52 16 24 H 0.09 1.83 7.83 -51.93 -0.41 1.42 16 25 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 26 H 0.06 0.90 8.10 -51.93 -0.42 0.48 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.81 8.11 -51.93 -0.42 0.39 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 269.93 15.07 4.07 4.07 Total: -1.00 -29.85 269.93 -8.65 -38.50 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -3.32 Total: 6.39 kcal Atomic # 6 Polarization: -21.54 SS G_CDS: -2.15 Total: -23.69 kcal Atomic # 7 Polarization: -24.91 SS G_CDS: 0.71 Total: -24.20 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: -0.44 Total: -14.98 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: 0.45 SS G_CDS: -2.51 Total: -2.06 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -29.85 -8.65 -38.50 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535743357.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.840 kcal (2) G-P(sol) polarization free energy of solvation -29.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds