Wall clock time and date at job start Mon Mar 30 2020 05:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 120.00376 * 2 1 4 4 H 1.48491 * 109.47312 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46948 * 300.00094 * 3 2 1 6 6 H 1.48500 * 109.46809 * 60.00013 * 3 2 1 7 7 C 1.37877 * 119.99723 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99852 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00129 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.46959 * 60.00169 * 9 7 2 11 11 O 1.42898 * 109.46964 * 300.00198 * 9 7 2 12 12 C 1.50703 * 109.47227 * 180.02562 * 9 7 2 13 13 C 1.32913 * 122.14856 * 95.02261 * 12 9 7 14 14 S 1.75720 * 109.58642 * 179.97438 * 13 12 9 15 15 C 1.75841 * 91.07923 * 359.97438 * 14 13 12 16 16 C 1.34635 * 109.96466 * 359.76483 * 15 14 13 17 17 C 1.52283 * 122.82366 * 179.66910 * 16 15 14 18 18 C 1.52982 * 108.85954 * 343.01647 * 17 16 15 19 19 C 1.53150 * 109.30526 * 50.97203 * 18 17 16 20 20 C 1.51406 * 125.24569 * 180.02562 * 15 14 13 21 21 H 0.97003 * 119.99231 * 359.97438 * 1 2 3 22 22 H 0.96698 * 113.99898 * 299.99550 * 11 9 7 23 23 H 1.07999 * 125.20681 * 359.97438 * 13 12 9 24 24 H 1.09001 * 109.72025 * 223.09928 * 17 16 15 25 25 H 1.08996 * 109.49280 * 102.79250 * 17 16 15 26 26 H 1.09001 * 109.49729 * 291.02377 * 18 17 16 27 27 H 1.09001 * 109.49840 * 170.92129 * 18 17 16 28 28 H 1.08994 * 109.55691 * 169.59247 * 19 18 17 29 29 H 1.09002 * 109.55410 * 49.27379 * 19 18 17 30 30 H 1.09001 * 109.59588 * 283.45386 * 20 15 14 31 31 H 1.09004 * 109.59773 * 43.92536 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8906 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6240 -2.5567 -0.8903 11 8 0.4299 -2.5750 1.1665 12 6 2.2303 -3.6447 -0.0005 13 6 2.6149 -4.2463 1.1205 14 16 3.7543 -5.5287 0.7397 15 6 3.6407 -5.1653 -0.9770 16 6 2.7849 -4.1450 -1.1752 17 6 2.4733 -3.5856 -2.5569 18 6 3.5554 -4.0493 -3.5337 19 6 3.7256 -5.5669 -3.4177 20 6 4.3872 -5.8924 -2.0753 21 1 -0.4849 0.8401 0.0004 22 1 0.9223 -2.5299 1.9975 23 1 2.2787 -3.9867 2.1134 24 1 2.4587 -2.4963 -2.5179 25 1 1.5015 -3.9524 -2.8872 26 1 4.4981 -3.5580 -3.2925 27 1 3.2610 -3.7930 -4.5514 28 1 4.3551 -5.9267 -4.2315 29 1 2.7491 -6.0485 -3.4692 30 1 5.4263 -5.5636 -2.0907 31 1 4.3439 -6.9670 -1.8973 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535743357.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:32 Heat of formation + Delta-G solvation = -60.019672 kcal Electronic energy + Delta-G solvation = -15000.476144 eV Core-core repulsion = 12564.590742 eV Total energy + Delta-G solvation = -2435.885403 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.36382 -37.84812 -35.35004 -34.31018 -31.74676 -29.85237 -29.00696 -25.59394 -24.07058 -23.16385 -20.80728 -19.13870 -18.86703 -18.16884 -16.78135 -16.65284 -15.66295 -15.24655 -15.04373 -14.78591 -14.65449 -14.23300 -13.93230 -13.40172 -13.25580 -12.97772 -12.88383 -12.79669 -12.32960 -12.24777 -11.98696 -11.68157 -11.54098 -11.17133 -11.10121 -10.77245 -10.34274 -9.22890 -8.97626 -8.14466 -6.41437 0.21043 0.87032 1.15055 1.36874 1.38405 1.50707 1.89727 2.39263 3.08662 3.81541 3.97954 4.06853 4.22562 4.25565 4.39985 4.49841 4.61497 4.67143 4.87533 4.95939 5.01428 5.06526 5.11067 5.25144 5.27847 5.48389 5.53455 5.62969 5.74039 5.95766 6.03821 6.67773 7.27290 7.45290 8.88119 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.026491 B = 0.008681 C = 0.007484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.696304 B = 3224.800488 C = 3740.503058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.029 3.971 3 Si 0.958 3.042 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.277 1.277 7 C -0.563 4.563 8 H 0.049 0.951 9 C 0.282 3.718 10 H 0.033 0.967 11 O -0.577 6.577 12 C -0.111 4.111 13 C -0.237 4.237 14 S 0.089 5.911 15 C -0.186 4.186 16 C -0.111 4.111 17 C -0.059 4.059 18 C -0.113 4.113 19 C -0.108 4.108 20 C -0.043 4.043 21 H 0.263 0.737 22 H 0.355 0.645 23 H 0.161 0.839 24 H 0.057 0.943 25 H 0.065 0.935 26 H 0.061 0.939 27 H 0.083 0.917 28 H 0.099 0.901 29 H 0.062 0.938 30 H 0.089 0.911 31 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.414 -10.643 -4.720 14.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.173 4.173 3 Si 0.783 3.217 4 H -0.192 1.192 5 H -0.201 1.201 6 H -0.203 1.203 7 C -0.601 4.601 8 H 0.068 0.932 9 C 0.222 3.778 10 H 0.051 0.949 11 O -0.382 6.382 12 C -0.123 4.123 13 C -0.371 4.371 14 S 0.355 5.645 15 C -0.303 4.303 16 C -0.123 4.123 17 C -0.098 4.098 18 C -0.150 4.150 19 C -0.147 4.147 20 C -0.082 4.082 21 H 0.072 0.928 22 H 0.201 0.799 23 H 0.179 0.821 24 H 0.076 0.924 25 H 0.083 0.917 26 H 0.079 0.921 27 H 0.101 0.899 28 H 0.117 0.883 29 H 0.081 0.919 30 H 0.107 0.893 31 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 9.594 -11.676 -4.242 15.696 hybrid contribution -0.490 2.338 0.067 2.390 sum 9.104 -9.337 -4.175 13.693 Atomic orbital electron populations 1.70211 1.07487 1.27431 1.48343 1.25856 0.95485 1.02607 0.93393 0.85530 0.78969 0.79279 0.77969 1.19195 1.20064 1.20303 1.21703 0.92808 0.91606 1.53973 0.93243 1.17915 0.86250 0.88734 0.84886 0.94899 1.86525 1.39053 1.96430 1.16157 1.20095 1.00443 0.98674 0.93118 1.25034 1.06288 1.03582 1.02197 1.83341 1.45248 1.35147 1.00757 1.25132 1.04826 1.02612 0.97753 1.19619 0.99306 0.97325 0.96082 1.20517 0.99356 0.99814 0.90143 1.21538 0.97938 0.96794 0.98769 1.21576 1.01475 0.95248 0.96407 1.20430 0.98213 0.99196 0.90332 0.92787 0.79912 0.82140 0.92394 0.91666 0.92068 0.89886 0.88292 0.91917 0.89305 0.89002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.71 12.84 21.45 0.28 -53.44 16 2 C 0.03 1.64 5.40 84.65 0.46 2.10 16 3 Si 0.96 43.82 29.54 68.60 2.03 45.85 16 4 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 5 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 6 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 7 C -0.56 -31.57 8.61 25.60 0.22 -31.35 16 8 H 0.05 2.79 7.74 -2.91 -0.02 2.77 16 9 C 0.28 15.06 2.68 29.10 0.08 15.14 16 10 H 0.03 1.96 7.65 -2.39 -0.02 1.94 16 11 O -0.58 -31.24 12.43 -148.98 -1.85 -33.10 16 12 C -0.11 -5.02 4.91 -20.80 -0.10 -5.12 16 13 C -0.24 -9.39 10.34 66.65 0.69 -8.70 16 14 S 0.09 2.81 23.31 -56.49 -1.32 1.49 16 15 C -0.19 -6.06 6.35 25.08 0.16 -5.90 16 16 C -0.11 -4.37 5.78 -19.95 -0.12 -4.49 16 17 C -0.06 -2.13 5.31 30.35 0.16 -1.96 16 18 C -0.11 -2.94 5.89 30.64 0.18 -2.76 16 19 C -0.11 -2.28 5.94 30.70 0.18 -2.09 16 20 C -0.04 -0.98 6.26 30.13 0.19 -0.79 16 21 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 22 H 0.36 16.97 7.65 -74.06 -0.57 16.40 16 23 H 0.16 5.99 6.94 -2.91 -0.02 5.97 16 24 H 0.06 2.43 7.83 -2.39 -0.02 2.41 16 25 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 26 H 0.06 1.62 8.10 -2.39 -0.02 1.60 16 27 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.06 1.37 8.11 -2.39 -0.02 1.36 16 30 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 Total: -1.00 -65.79 269.93 1.80 -63.99 By element: Atomic # 1 Polarization: 20.57 SS G_CDS: 0.57 Total: 21.14 kcal Atomic # 6 Polarization: -48.03 SS G_CDS: 2.10 Total: -45.93 kcal Atomic # 7 Polarization: -53.71 SS G_CDS: 0.28 Total: -53.44 kcal Atomic # 8 Polarization: -31.24 SS G_CDS: -1.85 Total: -33.10 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Atomic # 16 Polarization: 2.81 SS G_CDS: -1.32 Total: 1.49 kcal Total: -65.79 1.80 -63.99 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535743357.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.972 kcal (2) G-P(sol) polarization free energy of solvation -65.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds