Wall clock time and date at job start Mon Mar 30 2020 05:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00272 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00082 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 11 11 O 1.42893 * 109.47067 * 59.99271 * 9 7 2 12 12 C 1.50700 * 109.47062 * 179.97438 * 9 7 2 13 13 C 1.32910 * 122.14870 * 264.70618 * 12 9 7 14 14 S 1.75728 * 109.58241 * 179.86966 * 13 12 9 15 15 C 1.75823 * 91.08130 * 0.32892 * 14 13 12 16 16 C 1.34636 * 109.96775 * 359.81839 * 15 14 13 17 17 C 1.52276 * 122.82893 * 179.97438 * 16 15 14 18 18 C 1.52972 * 108.80293 * 342.53664 * 17 16 15 19 19 C 1.53157 * 109.30391 * 51.17266 * 18 17 16 20 20 C 1.51408 * 125.24885 * 179.81506 * 15 14 13 21 21 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 22 22 H 0.96706 * 114.00131 * 60.01141 * 11 9 7 23 23 H 1.07997 * 125.20515 * 0.02562 * 13 12 9 24 24 H 1.09005 * 109.58024 * 102.32862 * 17 16 15 25 25 H 1.08994 * 109.58345 * 222.59801 * 17 16 15 26 26 H 1.09001 * 109.50404 * 171.12216 * 18 17 16 27 27 H 1.09005 * 109.49791 * 291.22852 * 18 17 16 28 28 H 1.09001 * 109.55152 * 49.29112 * 19 18 17 29 29 H 1.09009 * 109.55442 * 169.59770 * 19 18 17 30 30 H 1.09007 * 109.59478 * 43.91434 * 20 15 14 31 31 H 1.08994 * 109.73279 * 283.52649 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 1 0.6281 -2.5591 0.8866 11 8 0.4246 -2.5720 -1.1693 12 6 2.2304 -3.6446 -0.0133 13 6 2.6060 -4.2466 -1.1371 14 16 3.7521 -5.5258 -0.7653 15 6 3.6465 -5.1666 0.9526 16 6 2.7951 -4.1439 1.1570 17 6 2.4849 -3.5922 2.5420 18 6 2.9136 -4.6209 3.5899 19 6 4.3598 -5.0466 3.3195 20 6 4.3990 -5.8958 2.0456 21 1 -0.4850 -0.8400 0.0004 22 1 0.9133 -2.5247 -2.0025 23 1 2.2618 -3.9874 -2.1274 24 1 3.0336 -2.6631 2.6964 25 1 1.4150 -3.4033 2.6288 26 1 2.8443 -4.1786 4.5837 27 1 2.2612 -5.4923 3.5325 28 1 4.9819 -4.1614 3.1871 29 1 4.7309 -5.6327 4.1604 30 1 5.4338 -6.0473 1.7384 31 1 3.9289 -6.8607 2.2352 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535743364.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:34 Heat of formation + Delta-G solvation = -47.198794 kcal Electronic energy + Delta-G solvation = -15037.070461 eV Core-core repulsion = 12601.741013 eV Total energy + Delta-G solvation = -2435.329448 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.02289 -36.41162 -33.98274 -32.18743 -30.56112 -28.46597 -26.83306 -23.53157 -22.88846 -21.86886 -19.53845 -17.60610 -17.28490 -16.94612 -15.39544 -14.42925 -14.00855 -13.82085 -13.66448 -13.59291 -13.24241 -12.72306 -12.46766 -12.11305 -11.89562 -11.55838 -11.05792 -10.91853 -10.80811 -10.64133 -10.42333 -10.16606 -10.12606 -10.00835 -9.42012 -8.54537 -8.31853 -7.83365 -7.53156 -6.37064 -4.21770 1.59937 2.19552 2.56261 3.37101 3.41539 3.44224 3.61380 4.50112 4.90902 5.04639 5.07469 5.29710 5.42429 5.48992 5.67525 5.76714 5.81268 5.90295 5.97907 6.09893 6.20883 6.21563 6.30513 6.46287 6.58357 6.71347 6.95219 7.14337 7.53825 7.93678 8.33986 8.82266 9.01276 9.62248 11.01120 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.026070 B = 0.008708 C = 0.007559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.753341 B = 3214.804885 C = 3703.437493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.036 3.964 3 Si 1.066 2.934 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.288 1.288 7 C -0.634 4.634 8 H 0.050 0.950 9 C 0.261 3.739 10 H 0.062 0.938 11 O -0.578 6.578 12 C -0.080 4.080 13 C -0.218 4.218 14 S 0.033 5.967 15 C -0.195 4.195 16 C -0.076 4.076 17 C -0.054 4.054 18 C -0.119 4.119 19 C -0.114 4.114 20 C -0.040 4.040 21 H 0.284 0.716 22 H 0.353 0.647 23 H 0.156 0.844 24 H 0.082 0.918 25 H 0.075 0.925 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.693 -9.852 4.064 13.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.173 4.173 3 Si 0.894 3.106 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.214 1.214 7 C -0.672 4.672 8 H 0.068 0.932 9 C 0.202 3.798 10 H 0.079 0.921 11 O -0.383 6.383 12 C -0.091 4.091 13 C -0.352 4.352 14 S 0.299 5.701 15 C -0.311 4.311 16 C -0.089 4.089 17 C -0.094 4.094 18 C -0.156 4.156 19 C -0.153 4.153 20 C -0.079 4.079 21 H 0.096 0.904 22 H 0.199 0.801 23 H 0.174 0.826 24 H 0.100 0.900 25 H 0.094 0.906 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.817 -9.354 3.580 12.706 hybrid contribution 0.014 -0.606 0.166 0.628 sum 7.832 -9.960 3.746 13.213 Atomic orbital electron populations 1.70645 1.06872 1.32223 1.42831 1.25798 0.96465 1.02317 0.92744 0.83606 0.74959 0.75416 0.76624 1.20691 1.21373 1.21418 1.22273 0.94372 0.91375 1.59192 0.93183 1.18408 0.86699 0.88993 0.85710 0.92056 1.86509 1.39128 1.96459 1.16193 1.20038 0.99725 0.98158 0.91216 1.24793 1.05554 1.02521 1.02332 1.83627 1.47128 1.37855 1.01471 1.24516 1.06320 1.03985 0.96310 1.19473 0.97542 0.95725 0.96117 1.20494 1.01933 0.97912 0.89028 1.21570 0.96177 0.99228 0.98673 1.21566 0.97567 0.99880 0.96273 1.20180 0.98484 0.97434 0.91806 0.90442 0.80094 0.82630 0.89980 0.90605 0.91655 0.92053 0.91468 0.91684 0.91223 0.91021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.75 13.53 55.43 0.75 -26.00 16 2 C 0.04 1.00 5.40 -17.82 -0.10 0.90 16 3 Si 1.07 24.85 29.90 -169.99 -5.08 19.76 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.63 -17.44 8.75 -34.44 -0.30 -17.74 16 8 H 0.05 1.40 7.74 -52.49 -0.41 1.00 16 9 C 0.26 6.62 2.41 -29.03 -0.07 6.55 16 10 H 0.06 1.66 6.88 -51.93 -0.36 1.30 16 11 O -0.58 -14.66 11.70 -35.23 -0.41 -15.08 16 12 C -0.08 -1.76 4.91 -106.10 -0.52 -2.28 16 13 C -0.22 -4.35 10.34 28.89 0.30 -4.05 16 14 S 0.03 0.57 23.31 -107.50 -2.51 -1.94 16 15 C -0.19 -3.37 6.35 -35.24 -0.22 -3.60 16 16 C -0.08 -1.49 5.77 -104.75 -0.60 -2.09 16 17 C -0.05 -0.96 5.61 -27.11 -0.15 -1.12 16 18 C -0.12 -1.62 5.88 -26.66 -0.16 -1.78 16 19 C -0.11 -1.42 5.94 -26.57 -0.16 -1.57 16 20 C -0.04 -0.53 6.26 -27.46 -0.17 -0.70 16 21 H 0.28 8.67 6.47 -40.82 -0.26 8.40 16 22 H 0.35 8.04 7.65 45.56 0.35 8.39 16 23 H 0.16 2.90 6.93 -52.49 -0.36 2.53 16 24 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 25 H 0.08 1.41 7.18 -51.93 -0.37 1.03 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.06 0.82 8.10 -51.93 -0.42 0.40 16 28 H 0.07 0.88 8.11 -51.93 -0.42 0.46 16 29 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 267.16 15.07 4.03 4.03 Total: -1.00 -30.35 267.16 -8.55 -38.90 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -3.17 Total: 7.82 kcal Atomic # 6 Polarization: -25.33 SS G_CDS: -2.16 Total: -27.49 kcal Atomic # 7 Polarization: -26.75 SS G_CDS: 0.75 Total: -26.00 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: -0.41 Total: -15.08 kcal Atomic # 14 Polarization: 24.85 SS G_CDS: -5.08 Total: 19.76 kcal Atomic # 16 Polarization: 0.57 SS G_CDS: -2.51 Total: -1.94 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -30.35 -8.55 -38.90 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535743364.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.297 kcal (2) G-P(sol) polarization free energy of solvation -30.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds