Wall clock time and date at job start Mon Mar 30 2020 05:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00272 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00082 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 11 11 O 1.42893 * 109.47067 * 59.99271 * 9 7 2 12 12 C 1.50700 * 109.47062 * 179.97438 * 9 7 2 13 13 C 1.32910 * 122.14870 * 264.70618 * 12 9 7 14 14 S 1.75728 * 109.58241 * 179.86966 * 13 12 9 15 15 C 1.75823 * 91.08130 * 0.32892 * 14 13 12 16 16 C 1.34636 * 109.96775 * 359.81839 * 15 14 13 17 17 C 1.52276 * 122.82893 * 179.97438 * 16 15 14 18 18 C 1.52972 * 108.80293 * 342.53664 * 17 16 15 19 19 C 1.53157 * 109.30391 * 51.17266 * 18 17 16 20 20 C 1.51408 * 125.24885 * 179.81506 * 15 14 13 21 21 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 22 22 H 0.96706 * 114.00131 * 60.01141 * 11 9 7 23 23 H 1.07997 * 125.20515 * 0.02562 * 13 12 9 24 24 H 1.09005 * 109.58024 * 102.32862 * 17 16 15 25 25 H 1.08994 * 109.58345 * 222.59801 * 17 16 15 26 26 H 1.09001 * 109.50404 * 171.12216 * 18 17 16 27 27 H 1.09005 * 109.49791 * 291.22852 * 18 17 16 28 28 H 1.09001 * 109.55152 * 49.29112 * 19 18 17 29 29 H 1.09009 * 109.55442 * 169.59770 * 19 18 17 30 30 H 1.09007 * 109.59478 * 43.91434 * 20 15 14 31 31 H 1.08994 * 109.73279 * 283.52649 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 1 0.6281 -2.5591 0.8866 11 8 0.4246 -2.5720 -1.1693 12 6 2.2304 -3.6446 -0.0133 13 6 2.6060 -4.2466 -1.1371 14 16 3.7521 -5.5258 -0.7653 15 6 3.6465 -5.1666 0.9526 16 6 2.7951 -4.1439 1.1570 17 6 2.4849 -3.5922 2.5420 18 6 2.9136 -4.6209 3.5899 19 6 4.3598 -5.0466 3.3195 20 6 4.3990 -5.8958 2.0456 21 1 -0.4850 -0.8400 0.0004 22 1 0.9133 -2.5247 -2.0025 23 1 2.2618 -3.9874 -2.1274 24 1 3.0336 -2.6631 2.6964 25 1 1.4150 -3.4033 2.6288 26 1 2.8443 -4.1786 4.5837 27 1 2.2612 -5.4923 3.5325 28 1 4.9819 -4.1614 3.1871 29 1 4.7309 -5.6327 4.1604 30 1 5.4338 -6.0473 1.7384 31 1 3.9289 -6.8607 2.2352 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535743364.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:34 Heat of formation + Delta-G solvation = -66.261333 kcal Electronic energy + Delta-G solvation = -15037.897075 eV Core-core repulsion = 12601.741013 eV Total energy + Delta-G solvation = -2436.156061 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.48946 -38.11634 -35.53032 -34.34765 -31.81561 -29.90351 -28.73842 -25.45563 -24.14762 -23.32200 -21.01766 -19.43432 -18.96252 -18.45740 -17.15765 -15.80542 -15.67240 -15.47195 -15.24291 -14.94634 -14.71415 -14.37462 -14.11232 -13.75233 -13.38722 -12.94631 -12.64170 -12.53448 -12.36345 -12.13948 -11.95853 -11.76234 -11.63935 -11.24769 -11.21454 -10.68284 -10.32557 -9.30624 -9.07215 -8.59682 -6.48419 0.12238 0.78889 1.06620 1.50294 1.57676 1.77775 1.81045 2.54602 3.12974 3.73940 3.89233 3.92885 4.03054 4.17729 4.30141 4.39600 4.50242 4.61842 4.80737 4.83167 4.90903 4.96552 5.03539 5.14940 5.19655 5.42568 5.43917 5.60255 5.79130 5.83464 6.09628 6.52965 7.04457 7.44878 8.73033 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.026070 B = 0.008708 C = 0.007559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.753341 B = 3214.804885 C = 3703.437493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.014 4.014 3 Si 1.113 2.887 4 H -0.282 1.282 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.635 4.635 8 H 0.041 0.959 9 C 0.264 3.736 10 H 0.031 0.969 11 O -0.589 6.589 12 C -0.108 4.108 13 C -0.238 4.238 14 S 0.099 5.901 15 C -0.184 4.184 16 C -0.114 4.114 17 C -0.054 4.054 18 C -0.112 4.112 19 C -0.110 4.110 20 C -0.042 4.042 21 H 0.267 0.733 22 H 0.363 0.637 23 H 0.160 0.840 24 H 0.062 0.938 25 H 0.050 0.950 26 H 0.083 0.917 27 H 0.067 0.933 28 H 0.057 0.943 29 H 0.101 0.899 30 H 0.091 0.909 31 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.152 -11.342 4.665 15.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.216 4.216 3 Si 0.934 3.066 4 H -0.208 1.208 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.673 4.673 8 H 0.060 0.940 9 C 0.205 3.795 10 H 0.049 0.951 11 O -0.396 6.396 12 C -0.120 4.120 13 C -0.373 4.373 14 S 0.365 5.635 15 C -0.301 4.301 16 C -0.126 4.126 17 C -0.093 4.093 18 C -0.150 4.150 19 C -0.149 4.149 20 C -0.082 4.082 21 H 0.078 0.922 22 H 0.210 0.790 23 H 0.178 0.822 24 H 0.080 0.920 25 H 0.068 0.932 26 H 0.101 0.899 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.120 0.880 30 H 0.109 0.891 31 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 10.290 -10.870 4.178 15.540 hybrid contribution -0.727 -0.263 -0.072 0.777 sum 9.563 -11.133 4.106 15.240 Atomic orbital electron populations 1.70783 1.07884 1.31143 1.45538 1.27264 0.96463 1.06131 0.91711 0.83007 0.74193 0.71442 0.77933 1.20764 1.19485 1.19701 1.22492 0.93972 0.92678 1.58140 0.94029 1.18108 0.86731 0.90155 0.84500 0.95145 1.86445 1.39737 1.96589 1.16779 1.19881 1.00489 0.98316 0.93318 1.25027 1.06483 1.03711 1.02051 1.83337 1.44467 1.35020 1.00628 1.25160 1.04581 1.02487 0.97887 1.19596 0.99456 0.97576 0.96016 1.20457 1.00131 0.98596 0.90117 1.21554 0.97388 0.98129 0.97910 1.21585 0.96167 0.99952 0.97154 1.20438 0.99186 0.97883 0.90650 0.92245 0.79030 0.82227 0.91992 0.93180 0.89875 0.91475 0.92375 0.88023 0.89076 0.88777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.01 13.53 21.45 0.29 -56.72 16 2 C -0.01 -0.78 5.40 84.65 0.46 -0.32 16 3 Si 1.11 50.32 29.90 68.60 2.05 52.37 16 4 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 5 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 6 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 7 C -0.64 -36.07 8.75 25.60 0.22 -35.85 16 8 H 0.04 2.38 7.74 -2.91 -0.02 2.36 16 9 C 0.26 14.07 2.41 29.10 0.07 14.14 16 10 H 0.03 1.79 6.88 -2.39 -0.02 1.78 16 11 O -0.59 -31.27 11.70 -148.98 -1.74 -33.02 16 12 C -0.11 -4.88 4.91 -20.81 -0.10 -4.98 16 13 C -0.24 -9.46 10.34 66.65 0.69 -8.77 16 14 S 0.10 3.11 23.31 -56.49 -1.32 1.79 16 15 C -0.18 -5.96 6.35 25.08 0.16 -5.80 16 16 C -0.11 -4.51 5.77 -19.95 -0.12 -4.63 16 17 C -0.05 -1.95 5.61 30.35 0.17 -1.78 16 18 C -0.11 -2.86 5.88 30.64 0.18 -2.68 16 19 C -0.11 -2.33 5.94 30.70 0.18 -2.15 16 20 C -0.04 -0.96 6.26 30.12 0.19 -0.77 16 21 H 0.27 17.16 6.47 -92.71 -0.60 16.56 16 22 H 0.36 17.16 7.65 -74.05 -0.57 16.60 16 23 H 0.16 5.97 6.93 -2.91 -0.02 5.95 16 24 H 0.06 2.41 8.14 -2.38 -0.02 2.40 16 25 H 0.05 2.00 7.18 -2.39 -0.02 1.99 16 26 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.07 1.64 8.10 -2.38 -0.02 1.62 16 28 H 0.06 1.36 8.11 -2.39 -0.02 1.34 16 29 H 0.10 1.49 8.14 -2.38 -0.02 1.47 16 30 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 31 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -67.42 267.16 2.13 -65.29 By element: Atomic # 1 Polarization: 23.13 SS G_CDS: 0.74 Total: 23.87 kcal Atomic # 6 Polarization: -55.69 SS G_CDS: 2.10 Total: -53.59 kcal Atomic # 7 Polarization: -57.01 SS G_CDS: 0.29 Total: -56.72 kcal Atomic # 8 Polarization: -31.27 SS G_CDS: -1.74 Total: -33.02 kcal Atomic # 14 Polarization: 50.32 SS G_CDS: 2.05 Total: 52.37 kcal Atomic # 16 Polarization: 3.11 SS G_CDS: -1.32 Total: 1.79 kcal Total: -67.42 2.13 -65.29 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535743364.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.970 kcal (2) G-P(sol) polarization free energy of solvation -67.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds