Wall clock time and date at job start Mon Mar 30 2020 05:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47408 * 2 1 4 4 C 1.53004 * 109.47088 * 120.00504 * 2 1 3 5 5 N 1.46895 * 109.47249 * 64.14231 * 4 2 1 6 6 C 1.46902 * 111.00237 * 209.71846 * 5 4 2 7 7 C 1.50702 * 109.46950 * 72.07427 * 6 5 4 8 8 H 1.07998 * 119.99861 * 5.08258 * 7 6 5 9 9 C 1.37876 * 120.00103 * 185.08131 * 7 6 5 10 10 N 1.31507 * 119.99899 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00108 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.47023 * 89.99981 * 11 9 7 13 13 H 1.48497 * 109.47102 * 209.99955 * 11 9 7 14 14 H 1.48502 * 109.47415 * 330.00254 * 11 9 7 15 15 C 1.46899 * 111.00135 * 85.76468 * 5 4 2 16 16 C 1.50703 * 109.47451 * 287.87739 * 15 5 4 17 17 C 1.34336 * 126.16237 * 97.91837 * 16 15 5 18 18 O 1.34753 * 107.11019 * 179.81343 * 17 16 15 19 19 C 1.33968 * 107.75530 * 0.36775 * 18 17 16 20 20 N 1.30262 * 108.76008 * 359.62699 * 19 18 17 21 21 H 1.09001 * 109.46632 * 304.42452 * 1 2 3 22 22 H 1.09006 * 109.46952 * 64.41806 * 1 2 3 23 23 H 1.09000 * 109.47361 * 184.42426 * 1 2 3 24 24 H 1.09005 * 109.46498 * 240.00043 * 2 1 3 25 25 H 1.08999 * 109.47241 * 179.97438 * 3 2 1 26 26 H 1.09000 * 109.47292 * 300.00157 * 3 2 1 27 27 H 1.09001 * 109.47190 * 60.00010 * 3 2 1 28 28 H 1.09004 * 109.46448 * 304.14482 * 4 2 1 29 29 H 1.08994 * 109.46648 * 184.14518 * 4 2 1 30 30 H 1.08994 * 109.47280 * 192.07404 * 6 5 4 31 31 H 1.08994 * 109.46982 * 312.07757 * 6 5 4 32 32 H 0.97004 * 120.00472 * 179.97438 * 10 9 7 33 33 H 1.08995 * 109.47754 * 167.87784 * 15 5 4 34 34 H 1.09005 * 109.46963 * 47.87647 * 15 5 4 35 35 H 1.07995 * 126.44560 * 0.06722 * 17 16 15 36 36 H 1.08000 * 125.61851 * 179.89622 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7214 1.2492 5 7 1.6338 -2.1322 1.2001 6 6 1.4489 -2.6742 2.5529 7 6 0.1956 -2.0967 3.1585 8 1 -0.4471 -1.4619 2.5667 9 6 -0.1306 -2.3789 4.4681 10 7 0.6517 -3.1523 5.1885 11 14 -1.6846 -1.6636 5.2184 12 1 -2.8172 -2.5979 4.9956 13 1 -1.4848 -1.4668 6.6767 14 1 -1.9871 -0.3577 4.5795 15 6 2.6028 -2.9330 0.4401 16 6 2.4806 -2.6102 -1.0269 17 6 3.2559 -1.7587 -1.7185 18 8 2.8147 -1.7656 -2.9917 19 6 1.7766 -2.6098 -3.0598 20 7 1.5751 -3.1220 -1.8792 21 1 -0.3633 0.5810 0.8477 22 1 -0.3633 0.4438 -0.9270 23 1 -0.3634 -1.0246 0.0793 24 1 1.8933 -0.5139 -0.8901 25 1 3.1301 1.4424 0.0005 26 1 1.6768 1.9563 -0.8900 27 1 1.6768 1.9563 0.8900 28 1 1.6173 -0.2522 2.1376 29 1 3.1275 -0.6575 1.2871 30 1 1.3606 -3.7593 2.5006 31 1 2.3066 -2.4089 3.1710 32 1 0.4225 -3.3506 6.1100 33 1 2.4012 -3.9925 0.5969 34 1 3.6121 -2.7009 0.7803 35 1 4.0806 -1.1808 -1.3285 36 1 1.2042 -2.8325 -3.9481 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000762947310.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:37 Heat of formation + Delta-G solvation = 23.311735 kcal Electronic energy + Delta-G solvation = -17653.539456 eV Core-core repulsion = 14946.640549 eV Total energy + Delta-G solvation = -2706.898907 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.13755 -37.60502 -34.61756 -33.88102 -32.40664 -30.41242 -27.25794 -26.59907 -26.24397 -23.88641 -22.49640 -21.23759 -20.39874 -19.41016 -17.31300 -16.34478 -16.22170 -15.18211 -14.94470 -14.49624 -14.29225 -13.91555 -13.61014 -13.19626 -12.76208 -12.33302 -12.05214 -11.73254 -11.50064 -11.37321 -11.00882 -10.88664 -10.76576 -10.58855 -10.36907 -10.23993 -10.14141 -9.92781 -9.74832 -9.24520 -8.41693 -8.36096 -7.22936 -5.99135 -3.99648 1.69566 2.98184 3.07580 3.34650 3.40560 3.44522 4.38322 4.46695 4.94398 5.17204 5.24177 5.36113 5.44010 5.52415 5.76984 5.78969 5.93831 5.99082 6.07807 6.13372 6.24579 6.27115 6.35578 6.49744 6.55805 6.58465 6.66383 6.96844 7.11463 7.28930 7.35814 7.87446 7.99965 8.14132 8.22506 8.57192 9.09498 9.64404 11.11412 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.029760 B = 0.007103 C = 0.006497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.641700 B = 3940.976053 C = 4308.736197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.102 4.102 3 C -0.145 4.145 4 C 0.067 3.933 5 N -0.525 5.525 6 C 0.194 3.806 7 C -0.500 4.500 8 H 0.066 0.934 9 C 0.054 3.946 10 N -0.901 5.901 11 Si 0.896 3.104 12 H -0.281 1.281 13 H -0.288 1.288 14 H -0.274 1.274 15 C 0.128 3.872 16 C 0.023 3.977 17 C -0.082 4.082 18 O -0.212 6.212 19 C 0.153 3.847 20 N -0.464 5.464 21 H 0.046 0.954 22 H 0.030 0.970 23 H 0.073 0.927 24 H 0.070 0.930 25 H 0.045 0.955 26 H 0.046 0.954 27 H 0.053 0.947 28 H 0.082 0.918 29 H 0.018 0.982 30 H 0.027 0.973 31 H -0.004 1.004 32 H 0.260 0.740 33 H 0.085 0.915 34 H 0.041 0.959 35 H 0.208 0.792 36 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.223 4.704 -13.592 15.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.121 4.121 3 C -0.203 4.203 4 C -0.061 4.061 5 N -0.249 5.249 6 C 0.070 3.930 7 C -0.539 4.539 8 H 0.084 0.916 9 C -0.147 4.147 10 N -0.541 5.541 11 Si 0.724 3.276 12 H -0.207 1.207 13 H -0.214 1.214 14 H -0.199 1.199 15 C -0.001 4.001 16 C -0.098 4.098 17 C -0.152 4.152 18 O -0.099 6.099 19 C -0.074 4.074 20 N -0.193 5.193 21 H 0.065 0.935 22 H 0.049 0.951 23 H 0.092 0.908 24 H 0.088 0.912 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.100 0.900 29 H 0.036 0.964 30 H 0.045 0.955 31 H 0.014 0.986 32 H 0.070 0.930 33 H 0.103 0.897 34 H 0.059 0.941 35 H 0.224 0.776 36 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 4.326 4.171 -13.520 14.796 hybrid contribution 0.399 0.879 0.755 1.226 sum 4.725 5.050 -12.765 14.518 Atomic orbital electron populations 1.21639 0.94931 1.03136 0.99125 1.21441 0.96944 0.94474 0.99246 1.21823 1.00042 0.97210 1.01176 1.22111 0.95896 0.89864 0.98251 1.61927 1.43119 1.00840 1.18987 1.19777 0.96428 0.95377 0.81463 1.21175 1.07037 1.29791 0.95912 0.91624 1.24977 0.97027 0.95512 0.97139 1.69954 1.37678 1.37408 1.09016 0.86532 0.83487 0.79525 0.78082 1.20676 1.21418 1.19876 1.20415 0.94542 0.99711 0.85463 1.21838 0.93172 0.97004 0.97784 1.24618 1.04218 1.05062 0.81345 1.84442 1.41032 1.53829 1.30551 1.28048 0.89517 0.90786 0.99012 1.70380 1.23569 1.25152 1.00165 0.93458 0.95132 0.90755 0.91172 0.93576 0.93467 0.92824 0.89973 0.96359 0.95476 0.98624 0.93011 0.89666 0.94126 0.77584 0.74064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.36 9.13 37.16 0.34 -2.02 16 2 C -0.10 -1.70 2.79 -90.62 -0.25 -1.95 16 3 C -0.14 -2.02 9.19 37.15 0.34 -1.68 16 4 C 0.07 1.29 4.21 -3.82 -0.02 1.27 16 5 N -0.52 -11.16 3.69 -237.52 -0.88 -12.04 16 6 C 0.19 4.99 4.68 -4.97 -0.02 4.96 16 7 C -0.50 -13.95 8.32 -34.44 -0.29 -14.24 16 8 H 0.07 1.83 7.81 -52.49 -0.41 1.42 16 9 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 10 N -0.90 -26.71 13.28 55.43 0.74 -25.97 16 11 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 14 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 15 C 0.13 2.33 5.49 -4.97 -0.03 2.31 16 16 C 0.02 0.37 5.03 -82.81 -0.42 -0.05 16 17 C -0.08 -1.10 9.53 29.36 0.28 -0.82 16 18 O -0.21 -2.75 10.78 5.36 0.06 -2.69 16 19 C 0.15 1.91 13.23 52.10 0.69 2.60 16 20 N -0.46 -7.71 11.29 -11.18 -0.13 -7.83 16 21 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 22 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.07 1.55 7.61 -51.93 -0.39 1.15 16 24 H 0.07 1.14 3.49 -51.93 -0.18 0.96 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.08 1.78 7.06 -51.93 -0.37 1.41 16 29 H 0.02 0.32 7.59 -51.93 -0.39 -0.07 16 30 H 0.03 0.75 7.72 -51.93 -0.40 0.34 16 31 H 0.00 -0.11 8.05 -51.93 -0.42 -0.53 16 32 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 33 H 0.08 1.63 7.72 -51.93 -0.40 1.23 16 34 H 0.04 0.67 7.73 -51.93 -0.40 0.27 16 35 H 0.21 2.20 8.06 -52.49 -0.42 1.78 16 36 H 0.24 1.79 8.06 -52.49 -0.42 1.36 16 LS Contribution 296.87 15.07 4.47 4.47 Total: -1.00 -31.36 296.87 -5.69 -37.04 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: -5.46 Total: -1.62 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: 0.53 Total: -8.17 kcal Atomic # 7 Polarization: -45.58 SS G_CDS: -0.27 Total: -45.84 kcal Atomic # 8 Polarization: -2.75 SS G_CDS: 0.06 Total: -2.69 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -31.36 -5.69 -37.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762947310.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.356 kcal (2) G-P(sol) polarization free energy of solvation -31.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds