Wall clock time and date at job start Mon Mar 30 2020 05:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00207 * 2 1 3 5 5 C 1.38241 * 119.98705 * 299.72682 * 4 2 1 6 6 C 1.38216 * 120.01392 * 179.72657 * 5 4 2 7 7 C 1.38349 * 119.98423 * 0.54490 * 6 5 4 8 8 Cl 1.73597 * 120.01130 * 179.70491 * 7 6 5 9 9 C 1.38345 * 119.97597 * 359.72808 * 7 6 5 10 10 C 1.38215 * 119.98514 * 359.97438 * 9 7 6 11 11 C 1.53000 * 109.47060 * 120.00319 * 2 1 3 12 12 H 1.09004 * 109.46724 * 180.02562 * 11 2 1 13 13 N 1.46896 * 109.47261 * 59.99962 * 11 2 1 14 14 C 1.50702 * 109.46903 * 299.99558 * 11 2 1 15 15 H 1.08000 * 119.99972 * 0.02562 * 14 11 2 16 16 C 1.37880 * 119.99499 * 180.02562 * 14 11 2 17 17 N 1.31509 * 120.00376 * 0.02562 * 16 14 11 18 18 Si 1.86803 * 119.99522 * 180.02562 * 16 14 11 19 19 H 1.48501 * 109.47438 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.46950 * 120.00020 * 18 16 14 21 21 H 1.48497 * 109.47111 * 240.00145 * 18 16 14 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 24 24 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 25 25 H 1.08003 * 119.99165 * 0.02562 * 5 4 2 26 26 H 1.08004 * 120.00432 * 180.26759 * 6 5 4 27 27 H 1.07999 * 120.01150 * 179.97438 * 9 7 6 28 28 H 1.08007 * 119.99313 * 180.02562 * 10 9 7 29 29 H 1.00907 * 110.99931 * 176.04715 * 13 11 2 30 30 H 1.00897 * 111.00325 * 299.99318 * 13 11 2 31 31 H 0.96999 * 120.00100 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.7028 -2.0355 -1.4462 6 6 2.1585 -2.6859 -2.5774 7 6 2.9539 -2.0138 -3.4882 8 17 3.5330 -2.8323 -4.9054 9 6 3.2880 -0.6893 -3.2690 10 6 2.8266 -0.0382 -2.1406 11 6 2.0400 -0.7213 1.2492 12 1 3.1300 -0.7209 1.2494 13 7 1.5503 -2.1063 1.2492 14 6 1.5377 -0.0109 2.4797 15 1 0.9165 0.8670 2.3806 16 6 1.8712 -0.4817 3.7319 17 7 2.6281 -1.5504 3.8526 18 14 1.2480 0.3985 5.2572 19 1 0.4217 1.5643 4.8531 20 1 0.4238 -0.5355 6.0656 21 1 2.4027 0.8660 6.0654 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5137 0.8900 24 1 -0.3635 0.5138 -0.8899 25 1 1.0852 -2.5612 -0.7330 26 1 1.8975 -3.7200 -2.7479 27 1 3.9092 -0.1642 -3.9795 28 1 3.0870 0.9960 -1.9695 29 1 1.9258 -2.6226 2.0306 30 1 0.5417 -2.1332 1.2493 31 1 2.8624 -1.8819 4.7335 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260367607.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:47 Heat of formation + Delta-G solvation = 2.446992 kcal Electronic energy + Delta-G solvation = -14794.815117 eV Core-core repulsion = 12294.168855 eV Total energy + Delta-G solvation = -2500.646262 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.077 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.13270 -36.54468 -35.53365 -32.52308 -30.70517 -30.05408 -28.48665 -25.95326 -23.97303 -22.25379 -21.49719 -18.88866 -16.62385 -16.42085 -15.42711 -14.89728 -14.49515 -14.10703 -13.42118 -13.23589 -12.99321 -12.68107 -12.57431 -11.95872 -11.79779 -11.26828 -11.19943 -11.07370 -10.84722 -10.52875 -10.48659 -10.34116 -10.01610 -9.72419 -9.45789 -8.61150 -8.54043 -7.95300 -7.16061 -6.08559 -4.24431 1.66122 1.81526 2.44654 3.19539 3.29068 3.32023 4.16749 4.32166 5.14083 5.21306 5.29172 5.50301 5.77396 5.92982 6.01453 6.10724 6.15750 6.34901 6.41806 6.48657 6.68843 6.74991 6.82463 6.99051 7.09194 7.31422 7.40709 7.68131 7.74481 8.12730 8.68796 8.92990 9.09799 9.47199 10.89214 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.052138 B = 0.005465 C = 0.005298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.904007 B = 5122.346884 C = 5284.151334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.047 4.047 3 H 0.065 0.935 4 C -0.047 4.047 5 C -0.071 4.071 6 C -0.123 4.123 7 C -0.049 4.049 8 Cl -0.096 7.096 9 C -0.123 4.123 10 C -0.118 4.118 11 C 0.220 3.780 12 H 0.036 0.964 13 N -0.849 5.849 14 C -0.546 4.546 15 H 0.057 0.943 16 C 0.065 3.935 17 N -0.893 5.893 18 Si 0.892 3.108 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.284 1.284 22 H 0.054 0.946 23 H 0.064 0.936 24 H 0.033 0.967 25 H 0.156 0.844 26 H 0.123 0.877 27 H 0.121 0.879 28 H 0.123 0.877 29 H 0.353 0.647 30 H 0.310 0.690 31 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.507 -0.254 -11.171 11.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.066 4.066 3 H 0.083 0.917 4 C -0.047 4.047 5 C -0.089 4.089 6 C -0.142 4.142 7 C -0.075 4.075 8 Cl -0.068 7.068 9 C -0.142 4.142 10 C -0.136 4.136 11 C 0.110 3.890 12 H 0.054 0.946 13 N -0.379 5.379 14 C -0.586 4.586 15 H 0.076 0.924 16 C -0.137 4.137 17 N -0.533 5.533 18 Si 0.720 3.280 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.210 1.210 22 H 0.073 0.927 23 H 0.083 0.917 24 H 0.052 0.948 25 H 0.174 0.826 26 H 0.141 0.859 27 H 0.139 0.861 28 H 0.141 0.859 29 H 0.169 0.831 30 H 0.120 0.880 31 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.972 -0.509 -11.857 11.908 hybrid contribution -0.449 0.673 1.762 1.939 sum -1.420 0.164 -10.095 10.196 Atomic orbital electron populations 1.21723 0.95238 1.01459 1.00444 1.20347 0.95500 0.98141 0.92614 0.91697 1.20270 0.94947 0.94449 0.95055 1.21597 0.98709 0.94085 0.94508 1.21102 0.98689 1.00081 0.94356 1.20836 1.02500 0.93725 0.90417 1.98320 1.88222 1.79569 1.40683 1.20832 1.01673 0.92915 0.98740 1.21064 0.98694 0.99961 0.93897 1.18850 0.95496 0.85900 0.88728 0.94564 1.59607 1.11257 1.16002 1.51066 1.21982 1.31996 1.13066 0.91542 0.92442 1.25018 0.94490 0.95071 0.99137 1.69750 1.36614 1.23093 1.23831 0.86545 0.78651 0.79745 0.83056 1.19814 1.21082 1.21004 0.92738 0.91706 0.94809 0.82649 0.85897 0.86060 0.85946 0.83052 0.88024 0.92663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.31 8.42 37.16 0.31 -1.99 16 2 C -0.05 -0.91 2.49 -91.77 -0.23 -1.14 16 3 H 0.06 1.25 7.88 -51.93 -0.41 0.84 16 4 C -0.05 -0.84 4.78 -104.62 -0.50 -1.34 16 5 C -0.07 -1.22 8.26 -39.59 -0.33 -1.55 16 6 C -0.12 -1.95 9.83 -39.55 -0.39 -2.34 16 7 C -0.05 -0.75 6.32 -39.50 -0.25 -1.00 16 8 Cl -0.10 -1.32 28.96 -51.86 -1.50 -2.82 16 9 C -0.12 -1.85 9.83 -39.55 -0.39 -2.24 16 10 C -0.12 -1.91 9.67 -39.59 -0.38 -2.29 16 11 C 0.22 5.10 2.52 -68.87 -0.17 4.93 16 12 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 13 N -0.85 -18.42 6.19 -5.65 -0.04 -18.46 16 14 C -0.55 -13.84 8.00 -34.44 -0.28 -14.12 16 15 H 0.06 1.45 6.71 -52.49 -0.35 1.10 16 16 C 0.06 1.69 5.38 -17.82 -0.10 1.60 16 17 N -0.89 -24.13 11.54 55.43 0.64 -23.49 16 18 Si 0.89 20.39 29.54 -169.99 -5.02 15.37 16 19 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H 0.05 0.92 5.93 -51.93 -0.31 0.62 16 23 H 0.06 1.21 6.62 -51.93 -0.34 0.86 16 24 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.16 2.72 5.38 -52.48 -0.28 2.43 16 26 H 0.12 1.72 8.06 -52.48 -0.42 1.30 16 27 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 28 H 0.12 1.77 7.95 -52.48 -0.42 1.35 16 29 H 0.35 8.54 7.08 -39.29 -0.28 8.26 16 30 H 0.31 6.36 6.91 -39.29 -0.27 6.09 16 31 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 268.20 15.07 4.04 4.04 Total: -1.00 -25.67 268.20 -8.06 -33.73 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -3.49 Total: 13.09 kcal Atomic # 6 Polarization: -18.78 SS G_CDS: -2.70 Total: -21.48 kcal Atomic # 7 Polarization: -42.55 SS G_CDS: 0.60 Total: -41.94 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -1.50 Total: -2.82 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -25.67 -8.06 -33.73 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260367607.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.180 kcal (2) G-P(sol) polarization free energy of solvation -25.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds