Wall clock time and date at job start Mon Mar 30 2020 05:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30837 * 1 3 3 Si 1.86801 * 119.99801 * 2 1 4 4 H 1.48497 * 109.47058 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47038 * 299.99795 * 3 2 1 6 6 H 1.48494 * 109.47133 * 59.99463 * 3 2 1 7 7 C 1.39922 * 120.00077 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00015 * 163.93312 * 7 2 1 9 9 C 1.41408 * 120.00178 * 343.93321 * 7 2 1 10 10 C 1.40789 * 120.20948 * 333.76335 * 9 7 2 11 11 C 1.37640 * 119.89289 * 180.02562 * 10 9 7 12 12 C 1.38521 * 120.32830 * 0.02702 * 11 10 9 13 13 C 1.39292 * 120.42468 * 0.22762 * 12 11 10 14 14 N 1.39681 * 119.95272 * 179.72662 * 13 12 11 15 15 C 1.38323 * 120.09190 * 359.48926 * 13 12 11 16 16 C 1.50698 * 120.15909 * 180.27746 * 15 13 12 17 17 C 1.53005 * 109.47129 * 270.25477 * 16 15 13 18 18 C 1.53005 * 109.47258 * 179.97438 * 17 16 15 19 19 Cl 1.80298 * 109.47060 * 180.02562 * 18 17 16 20 20 H 0.96993 * 120.00305 * 0.02562 * 1 2 3 21 21 H 1.08003 * 120.04866 * 0.04183 * 10 9 7 22 22 H 1.08005 * 119.83288 * 179.97438 * 11 10 9 23 23 H 1.08003 * 119.78677 * 179.97438 * 12 11 10 24 24 H 0.97002 * 119.99660 * 359.97438 * 14 13 12 25 25 H 0.96992 * 120.00104 * 180.02562 * 14 13 12 26 26 H 1.08999 * 109.47236 * 30.25268 * 16 15 13 27 27 H 1.08992 * 109.47369 * 150.25815 * 16 15 13 28 28 H 1.09002 * 109.47309 * 300.00291 * 17 16 15 29 29 H 1.09006 * 109.46939 * 60.00444 * 17 16 15 30 30 H 1.08997 * 109.46907 * 300.00564 * 18 17 16 31 31 H 1.08999 * 109.46614 * 60.00041 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.7023 1.3465 -0.0006 5 1 1.8836 2.3964 -1.2126 6 1 1.8835 2.3965 1.2124 7 6 2.0080 -1.2117 0.0005 8 1 3.0564 -1.2301 -0.2583 9 6 1.3424 -2.4123 0.3400 10 6 0.2112 -2.3828 1.1777 11 6 -0.4313 -3.5554 1.5043 12 6 0.0298 -4.7658 1.0134 13 6 1.1508 -4.8112 0.1879 14 7 1.6106 -6.0378 -0.2970 15 6 1.8064 -3.6429 -0.1563 16 6 3.0157 -3.6896 -1.0544 17 6 4.2771 -3.8500 -0.2033 18 6 5.5048 -3.8981 -1.1151 19 17 6.9911 -4.0878 -0.1123 20 1 -0.4850 0.8400 -0.0004 21 1 -0.1519 -1.4414 1.5630 22 1 -1.2987 -3.5316 2.1473 23 1 -0.4809 -5.6807 1.2756 24 1 1.1495 -6.8572 -0.0585 25 1 2.3914 -6.0703 -0.8716 26 1 2.9285 -4.5345 -1.7375 27 1 3.0790 -2.7644 -1.6270 28 1 4.3643 -3.0051 0.4799 29 1 4.2138 -4.7753 0.3693 30 1 5.4173 -4.7431 -1.7980 31 1 5.5682 -2.9730 -1.6881 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396125708.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:12 Heat of formation + Delta-G solvation = -16.187197 kcal Electronic energy + Delta-G solvation = -14790.976691 eV Core-core repulsion = 12289.522390 eV Total energy + Delta-G solvation = -2501.454301 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.077 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.18875 -35.89076 -34.33759 -33.80615 -32.39745 -29.90532 -27.58996 -25.63424 -24.66074 -21.39441 -20.70100 -19.35229 -17.28422 -16.20225 -15.32826 -14.80936 -14.62563 -14.41210 -13.69913 -13.12026 -12.94260 -12.77673 -12.03646 -11.90901 -11.64045 -11.38265 -11.10529 -10.85026 -10.71475 -10.46920 -10.43353 -10.18606 -10.04270 -9.58738 -9.38380 -9.18661 -8.90424 -7.27032 -6.72248 -6.22710 -4.33118 2.53006 2.82735 3.09533 3.14433 3.18136 3.37084 3.95595 4.70654 4.89015 5.15731 5.20498 5.58418 5.71927 5.92985 6.22157 6.26537 6.38867 6.51181 6.66351 6.89322 6.98024 7.11854 7.16626 7.35517 7.48952 7.87449 7.93919 8.14215 8.25656 8.50669 8.73313 8.80473 8.98183 9.10499 10.23636 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.015644 B = 0.009889 C = 0.006406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.346841 B = 2830.633875 C = 4370.142810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.077 3.923 3 Si 0.901 3.099 4 H -0.260 1.260 5 H -0.276 1.276 6 H -0.273 1.273 7 C -0.459 4.459 8 H 0.079 0.921 9 C 0.149 3.851 10 C -0.199 4.199 11 C -0.074 4.074 12 C -0.305 4.305 13 C 0.233 3.767 14 N -0.895 5.895 15 C -0.262 4.262 16 C -0.040 4.040 17 C -0.123 4.123 18 C -0.025 4.025 19 Cl -0.208 7.208 20 H 0.278 0.722 21 H 0.114 0.886 22 H 0.085 0.915 23 H 0.083 0.917 24 H 0.382 0.618 25 H 0.385 0.615 26 H 0.039 0.961 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.064 0.936 30 H 0.085 0.915 31 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.996 -4.751 -2.049 7.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.140 4.140 3 Si 0.726 3.274 4 H -0.184 1.184 5 H -0.201 1.201 6 H -0.198 1.198 7 C -0.488 4.488 8 H 0.097 0.903 9 C 0.146 3.854 10 C -0.220 4.220 11 C -0.093 4.093 12 C -0.329 4.329 13 C 0.132 3.868 14 N -0.436 5.436 15 C -0.267 4.267 16 C -0.078 4.078 17 C -0.161 4.161 18 C -0.088 4.088 19 Cl -0.182 7.182 20 H 0.089 0.911 21 H 0.132 0.868 22 H 0.103 0.897 23 H 0.101 0.899 24 H 0.208 0.792 25 H 0.212 0.788 26 H 0.058 0.942 27 H 0.088 0.912 28 H 0.096 0.904 29 H 0.083 0.917 30 H 0.103 0.897 31 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.878 -4.519 -1.964 7.669 hybrid contribution 0.360 0.426 -0.095 0.566 sum 6.237 -4.093 -2.059 7.739 Atomic orbital electron populations 1.69862 1.07512 1.28861 1.35419 1.25895 0.94667 1.01134 0.92353 0.86373 0.81113 0.81422 0.78505 1.18368 1.20127 1.19790 1.19570 0.97455 0.90826 1.40972 0.90287 1.17214 0.90214 0.90920 0.87095 1.21150 1.00539 0.96517 1.03750 1.20419 0.97662 0.92931 0.98281 1.19801 1.03236 0.96684 1.13162 1.17285 0.92546 0.84693 0.92290 1.42443 1.35847 1.05913 1.59436 1.18973 1.03704 0.92285 1.11787 1.19904 0.91366 1.00549 0.95978 1.21979 0.92044 1.03487 0.98566 1.24583 0.84908 1.04089 0.95194 1.98692 1.45515 1.98526 1.75425 0.91108 0.86836 0.89718 0.89913 0.79221 0.78769 0.94212 0.91234 0.90355 0.91708 0.89677 0.89159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.26 10.97 55.55 0.61 -19.65 16 2 C 0.08 1.90 5.16 -17.35 -0.09 1.81 16 3 Si 0.90 18.45 29.59 -169.99 -5.03 13.42 16 4 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 5 H -0.28 -5.58 7.11 56.52 0.40 -5.17 16 6 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 7 C -0.46 -11.60 8.11 -37.75 -0.31 -11.90 16 8 H 0.08 1.91 6.59 -52.49 -0.35 1.56 16 9 C 0.15 3.82 5.56 -106.85 -0.59 3.22 16 10 C -0.20 -5.17 8.68 -38.84 -0.34 -5.51 16 11 C -0.07 -1.75 10.01 -39.70 -0.40 -2.15 16 12 C -0.31 -6.87 9.90 -39.09 -0.39 -7.26 16 13 C 0.23 5.03 6.73 -83.86 -0.56 4.46 16 14 N -0.89 -15.08 8.98 32.37 0.29 -14.79 16 15 C -0.26 -5.96 5.21 -103.72 -0.54 -6.50 16 16 C -0.04 -0.75 4.28 -27.88 -0.12 -0.87 16 17 C -0.12 -2.04 5.30 -26.73 -0.14 -2.18 16 18 C -0.03 -0.34 6.66 37.16 0.25 -0.09 16 19 Cl -0.21 -2.97 29.15 -51.86 -1.51 -4.48 16 20 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16 21 H 0.11 3.06 6.22 -52.48 -0.33 2.73 16 22 H 0.08 1.82 8.06 -52.48 -0.42 1.39 16 23 H 0.08 1.68 8.06 -52.48 -0.42 1.26 16 24 H 0.38 5.59 8.84 -40.82 -0.36 5.23 16 25 H 0.38 5.79 6.82 -40.82 -0.28 5.51 16 26 H 0.04 0.66 6.56 -51.93 -0.34 0.32 16 27 H 0.07 1.37 6.78 -51.93 -0.35 1.02 16 28 H 0.08 1.47 7.86 -51.93 -0.41 1.06 16 29 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 274.11 15.07 4.13 4.13 Total: -1.00 -26.93 274.11 -8.40 -35.33 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -3.66 Total: 13.01 kcal Atomic # 6 Polarization: -23.73 SS G_CDS: -3.23 Total: -26.96 kcal Atomic # 7 Polarization: -35.34 SS G_CDS: 0.90 Total: -34.44 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -5.03 Total: 13.42 kcal Atomic # 17 Polarization: -2.97 SS G_CDS: -1.51 Total: -4.48 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -26.93 -8.40 -35.33 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396125708.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.143 kcal (2) G-P(sol) polarization free energy of solvation -26.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds