Wall clock time and date at job start Mon Mar 30 2020 05:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47096 * 2 1 4 4 H 1.09003 * 109.46740 * 305.64794 * 3 2 1 5 5 C 1.50700 * 109.47301 * 185.64530 * 3 2 1 6 6 H 1.07999 * 119.99872 * 240.00693 * 5 3 2 7 7 C 1.37874 * 119.99795 * 59.99677 * 5 3 2 8 8 N 1.31517 * 120.00194 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 119.99599 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47175 * 60.00484 * 9 7 5 11 11 H 1.48503 * 109.46945 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47094 * 299.99871 * 9 7 5 13 13 N 1.46903 * 109.46940 * 65.64240 * 3 2 1 14 14 C 1.46905 * 110.99744 * 204.24895 * 13 3 2 15 15 H 1.08999 * 109.47191 * 325.99115 * 14 13 3 16 16 C 1.53000 * 109.47061 * 85.99369 * 14 13 3 17 17 C 1.53003 * 109.46754 * 179.97438 * 16 14 13 18 18 C 1.53004 * 109.47063 * 299.99741 * 17 16 14 19 19 H 1.09002 * 109.47045 * 180.02562 * 18 17 16 20 20 C 1.53000 * 109.47259 * 300.00526 * 18 17 16 21 21 C 1.53001 * 109.46791 * 60.00306 * 18 17 16 22 22 H 1.08999 * 109.47346 * 59.99962 * 21 18 17 23 23 C 1.52999 * 109.46822 * 179.97438 * 21 18 17 24 24 C 1.52998 * 109.47511 * 299.99485 * 21 18 17 25 25 H 1.08997 * 109.47421 * 293.69769 * 1 2 3 26 26 H 1.09002 * 109.47073 * 53.70236 * 1 2 3 27 27 H 1.09002 * 109.47228 * 173.70039 * 1 2 3 28 28 H 1.08998 * 109.46718 * 239.99947 * 2 1 3 29 29 H 1.09001 * 109.46763 * 119.99934 * 2 1 3 30 30 H 0.97001 * 119.99655 * 180.02562 * 8 7 5 31 31 H 1.00897 * 111.00071 * 328.19847 * 13 3 2 32 32 H 1.08995 * 109.46845 * 59.99867 * 16 14 13 33 33 H 1.08991 * 109.47275 * 299.99808 * 16 14 13 34 34 H 1.08997 * 109.46863 * 180.02562 * 17 16 14 35 35 H 1.08999 * 109.47258 * 59.99892 * 17 16 14 36 36 H 1.08989 * 109.47276 * 59.99859 * 20 18 17 37 37 H 1.08999 * 109.46902 * 180.02562 * 20 18 17 38 38 H 1.08998 * 109.46995 * 299.99368 * 20 18 17 39 39 H 1.09005 * 109.47258 * 60.00673 * 23 21 18 40 40 H 1.09008 * 109.47352 * 179.97438 * 23 21 18 41 41 H 1.08997 * 109.47670 * 300.00199 * 23 21 18 42 42 H 1.08997 * 109.47307 * 180.02562 * 24 21 18 43 43 H 1.08999 * 109.47205 * 300.00564 * 24 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5964 1.9846 -0.8351 5 6 3.5405 1.4448 -0.1398 6 1 4.1540 1.8864 0.6316 7 6 4.1301 0.8831 -1.2523 8 7 3.3830 0.3456 -2.1918 9 14 5.9901 0.8854 -1.4252 10 1 6.5939 0.1463 -0.2874 11 1 6.3695 0.2268 -2.7010 12 1 6.4855 2.2853 -1.4249 13 7 1.6647 2.0945 1.2617 14 6 1.6014 3.5535 1.1019 15 1 2.3598 3.8739 0.3875 16 6 0.2162 3.9506 0.5878 17 6 0.1502 5.4702 0.4219 18 6 0.4049 6.1422 1.7726 19 1 0.3574 7.2248 1.6545 20 6 -0.6596 5.6918 2.7751 21 6 1.7901 5.7450 2.2867 22 1 2.5485 6.0658 1.5725 23 6 2.0450 6.4175 3.6371 24 6 1.8562 4.2255 2.4527 25 1 -0.3634 0.4130 0.9410 26 1 -0.3633 0.6084 -0.8283 27 1 -0.3634 -1.0215 -0.1128 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.7979 -0.0500 -2.9743 31 1 0.7906 1.7308 1.6107 32 1 -0.5421 3.6302 1.3022 33 1 0.0346 3.4715 -0.3742 34 1 -0.8368 5.7532 0.0561 35 1 0.9086 5.7910 -0.2923 36 1 -0.6125 4.6094 2.8933 37 1 -0.4784 6.1710 3.7373 38 1 -1.6464 5.9749 2.4089 39 1 1.2867 6.0970 4.3516 40 1 3.0318 6.1342 4.0036 41 1 1.9981 7.5000 3.5186 42 1 2.8429 3.9426 2.8193 43 1 1.0978 3.9047 3.1668 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220677861.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:29 Heat of formation + Delta-G solvation = -37.262887 kcal Electronic energy + Delta-G solvation = -18486.691177 eV Core-core repulsion = 15951.113084 eV Total energy + Delta-G solvation = -2535.578093 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.30974 -36.03347 -32.90439 -31.84007 -31.36672 -28.88133 -27.19494 -26.10244 -24.99934 -22.75423 -21.52408 -20.42868 -19.56544 -18.04422 -16.13791 -15.45353 -14.90488 -14.78963 -14.41937 -13.99183 -13.48566 -13.05677 -12.86758 -12.70546 -12.33761 -12.19651 -11.84611 -11.76620 -11.62871 -11.39244 -11.16963 -11.05254 -10.81910 -10.67573 -10.61038 -10.35078 -10.07305 -9.90175 -9.81963 -9.71897 -9.61657 -9.30853 -8.96325 -8.30052 -7.08843 -5.91781 -3.95528 3.36722 3.40629 3.44321 4.48558 4.87688 4.94128 5.01270 5.35027 5.38669 5.46407 5.53343 5.64550 5.66471 5.75007 5.87066 5.90738 5.95383 6.11486 6.14034 6.17845 6.19609 6.21068 6.21963 6.25899 6.34175 6.45102 6.46911 6.56063 6.63698 6.71189 6.89198 6.91450 6.98069 7.16689 7.26683 7.60397 7.84171 7.98342 8.41627 8.47385 8.86593 9.12811 9.69273 11.13430 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.024483 B = 0.007161 C = 0.006148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.380720 B = 3908.996724 C = 4553.414229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.126 4.126 3 C 0.220 3.780 4 H 0.002 0.998 5 C -0.491 4.491 6 H 0.060 0.940 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.893 3.107 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.279 1.279 13 N -0.683 5.683 14 C 0.096 3.904 15 H 0.078 0.922 16 C -0.147 4.147 17 C -0.110 4.110 18 C -0.084 4.084 19 H 0.061 0.939 20 C -0.150 4.150 21 C -0.088 4.088 22 H 0.067 0.933 23 C -0.146 4.146 24 C -0.099 4.099 25 H 0.035 0.965 26 H 0.041 0.959 27 H 0.036 0.964 28 H 0.098 0.902 29 H 0.040 0.960 30 H 0.259 0.741 31 H 0.315 0.685 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.053 0.947 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.052 0.948 38 H 0.046 0.954 39 H 0.054 0.946 40 H 0.052 0.948 41 H 0.047 0.953 42 H 0.064 0.936 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.836 9.179 7.392 13.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.164 4.164 3 C 0.113 3.887 4 H 0.019 0.981 5 C -0.530 4.530 6 H 0.078 0.922 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.722 3.278 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.205 1.205 13 N -0.312 5.312 14 C -0.015 4.015 15 H 0.097 0.903 16 C -0.186 4.186 17 C -0.148 4.148 18 C -0.102 4.102 19 H 0.079 0.921 20 C -0.207 4.207 21 C -0.107 4.107 22 H 0.086 0.914 23 C -0.203 4.203 24 C -0.137 4.137 25 H 0.054 0.946 26 H 0.060 0.940 27 H 0.055 0.945 28 H 0.116 0.884 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.132 0.868 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.066 0.934 42 H 0.083 0.917 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.153 9.059 7.452 13.246 hybrid contribution 0.132 0.036 -0.776 0.788 sum -6.021 9.095 6.676 12.789 Atomic orbital electron populations 1.21872 0.99680 0.99582 0.99470 1.21764 0.91166 1.00579 1.02928 1.19140 0.95198 0.89805 0.84603 0.98075 1.21201 0.91443 1.36282 1.04075 0.92211 1.24951 0.97942 0.95762 0.95910 1.69868 1.34659 1.39651 1.09585 0.86638 0.86012 0.78099 0.77083 1.20348 1.21504 1.20482 1.60772 1.35224 1.02265 1.32969 1.21435 0.94752 0.89431 0.95862 0.90330 1.22318 0.99553 0.95493 1.01231 1.21500 1.00781 0.95945 0.96564 1.21088 0.95050 0.98886 0.95180 0.92096 1.21974 0.97863 1.02192 0.98719 1.21146 0.96470 0.96364 0.96745 0.91431 1.21867 1.01403 0.99639 0.97396 1.21579 1.01803 0.92521 0.97789 0.94641 0.93973 0.94525 0.88383 0.94164 0.93122 0.86783 0.92486 0.92335 0.92864 0.92120 0.91775 0.92914 0.93505 0.92661 0.92883 0.93356 0.91739 0.92579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 9.63 37.16 0.36 -2.55 16 2 C -0.13 -2.99 5.37 -26.73 -0.14 -3.14 16 3 C 0.22 5.46 1.84 -68.86 -0.13 5.33 16 4 H 0.00 0.04 7.19 -51.93 -0.37 -0.33 16 5 C -0.49 -13.64 8.46 -34.44 -0.29 -13.93 16 6 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 7 C 0.05 1.52 5.29 -17.82 -0.09 1.42 16 8 N -0.90 -25.73 11.29 55.43 0.63 -25.11 16 9 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 N -0.68 -14.42 6.04 -100.94 -0.61 -15.03 16 14 C 0.10 1.78 2.27 -67.71 -0.15 1.63 16 15 H 0.08 1.70 7.60 -51.93 -0.39 1.31 16 16 C -0.15 -2.38 4.88 -26.73 -0.13 -2.51 16 17 C -0.11 -1.53 5.45 -26.73 -0.15 -1.67 16 18 C -0.08 -1.04 2.72 -90.62 -0.25 -1.29 16 19 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 20 C -0.15 -1.73 8.15 37.16 0.30 -1.42 16 21 C -0.09 -1.18 2.49 -90.62 -0.23 -1.41 16 22 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 23 C -0.15 -1.67 8.84 37.16 0.33 -1.34 16 24 C -0.10 -1.56 4.54 -26.73 -0.12 -1.69 16 25 H 0.03 0.62 6.68 -51.93 -0.35 0.27 16 26 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.10 2.62 5.94 -51.93 -0.31 2.32 16 29 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 31 H 0.31 6.15 6.34 -39.29 -0.25 5.90 16 32 H 0.06 0.87 6.41 -51.93 -0.33 0.53 16 33 H 0.06 1.06 7.49 -51.93 -0.39 0.67 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.06 0.80 4.81 -51.94 -0.25 0.55 16 37 H 0.05 0.55 6.43 -51.93 -0.33 0.22 16 38 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.05 0.60 6.43 -51.93 -0.33 0.27 16 40 H 0.05 0.61 8.14 -51.92 -0.42 0.18 16 41 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.06 0.85 6.43 -51.93 -0.33 0.51 16 LS Contribution 315.55 15.07 4.76 4.76 Total: -1.00 -27.65 315.55 -8.78 -36.43 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -7.84 Total: 4.80 kcal Atomic # 6 Polarization: -21.87 SS G_CDS: -0.69 Total: -22.56 kcal Atomic # 7 Polarization: -40.15 SS G_CDS: 0.02 Total: -40.13 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -27.65 -8.78 -36.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220677861.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.836 kcal (2) G-P(sol) polarization free energy of solvation -27.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds