Wall clock time and date at job start Mon Mar 30 2020 05:51:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47096 * 2 1 4 4 H 1.09003 * 109.46740 * 305.64794 * 3 2 1 5 5 C 1.50700 * 109.47301 * 185.64530 * 3 2 1 6 6 H 1.07999 * 119.99872 * 240.00693 * 5 3 2 7 7 C 1.37874 * 119.99795 * 59.99677 * 5 3 2 8 8 N 1.31517 * 120.00194 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 119.99599 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47175 * 60.00484 * 9 7 5 11 11 H 1.48503 * 109.46945 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47094 * 299.99871 * 9 7 5 13 13 N 1.46903 * 109.46940 * 65.64240 * 3 2 1 14 14 C 1.46905 * 110.99744 * 204.24895 * 13 3 2 15 15 H 1.08999 * 109.47191 * 325.99115 * 14 13 3 16 16 C 1.53000 * 109.47061 * 85.99369 * 14 13 3 17 17 C 1.53003 * 109.46754 * 179.97438 * 16 14 13 18 18 C 1.53004 * 109.47063 * 299.99741 * 17 16 14 19 19 H 1.09002 * 109.47045 * 180.02562 * 18 17 16 20 20 C 1.53000 * 109.47259 * 300.00526 * 18 17 16 21 21 C 1.53001 * 109.46791 * 60.00306 * 18 17 16 22 22 H 1.08999 * 109.47346 * 59.99962 * 21 18 17 23 23 C 1.52999 * 109.46822 * 179.97438 * 21 18 17 24 24 C 1.52998 * 109.47511 * 299.99485 * 21 18 17 25 25 H 1.08997 * 109.47421 * 293.69769 * 1 2 3 26 26 H 1.09002 * 109.47073 * 53.70236 * 1 2 3 27 27 H 1.09002 * 109.47228 * 173.70039 * 1 2 3 28 28 H 1.08998 * 109.46718 * 239.99947 * 2 1 3 29 29 H 1.09001 * 109.46763 * 119.99934 * 2 1 3 30 30 H 0.97001 * 119.99655 * 180.02562 * 8 7 5 31 31 H 1.00897 * 111.00071 * 328.19847 * 13 3 2 32 32 H 1.08995 * 109.46845 * 59.99867 * 16 14 13 33 33 H 1.08991 * 109.47275 * 299.99808 * 16 14 13 34 34 H 1.08997 * 109.46863 * 180.02562 * 17 16 14 35 35 H 1.08999 * 109.47258 * 59.99892 * 17 16 14 36 36 H 1.08989 * 109.47276 * 59.99859 * 20 18 17 37 37 H 1.08999 * 109.46902 * 180.02562 * 20 18 17 38 38 H 1.08998 * 109.46995 * 299.99368 * 20 18 17 39 39 H 1.09005 * 109.47258 * 60.00673 * 23 21 18 40 40 H 1.09008 * 109.47352 * 179.97438 * 23 21 18 41 41 H 1.08997 * 109.47670 * 300.00199 * 23 21 18 42 42 H 1.08997 * 109.47307 * 180.02562 * 24 21 18 43 43 H 1.08999 * 109.47205 * 300.00564 * 24 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5964 1.9846 -0.8351 5 6 3.5405 1.4448 -0.1398 6 1 4.1540 1.8864 0.6316 7 6 4.1301 0.8831 -1.2523 8 7 3.3830 0.3456 -2.1918 9 14 5.9901 0.8854 -1.4252 10 1 6.5939 0.1463 -0.2874 11 1 6.3695 0.2268 -2.7010 12 1 6.4855 2.2853 -1.4249 13 7 1.6647 2.0945 1.2617 14 6 1.6014 3.5535 1.1019 15 1 2.3598 3.8739 0.3875 16 6 0.2162 3.9506 0.5878 17 6 0.1502 5.4702 0.4219 18 6 0.4049 6.1422 1.7726 19 1 0.3574 7.2248 1.6545 20 6 -0.6596 5.6918 2.7751 21 6 1.7901 5.7450 2.2867 22 1 2.5485 6.0658 1.5725 23 6 2.0450 6.4175 3.6371 24 6 1.8562 4.2255 2.4527 25 1 -0.3634 0.4130 0.9410 26 1 -0.3633 0.6084 -0.8283 27 1 -0.3634 -1.0215 -0.1128 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.7979 -0.0500 -2.9743 31 1 0.7906 1.7308 1.6107 32 1 -0.5421 3.6302 1.3022 33 1 0.0346 3.4715 -0.3742 34 1 -0.8368 5.7532 0.0561 35 1 0.9086 5.7910 -0.2923 36 1 -0.6125 4.6094 2.8933 37 1 -0.4784 6.1710 3.7373 38 1 -1.6464 5.9749 2.4089 39 1 1.2867 6.0970 4.3516 40 1 3.0318 6.1342 4.0036 41 1 1.9981 7.5000 3.5186 42 1 2.8429 3.9426 2.8193 43 1 1.0978 3.9047 3.1668 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220677861.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:28 Heat of formation + Delta-G solvation = -52.480235 kcal Electronic energy + Delta-G solvation = -18487.351051 eV Core-core repulsion = 15951.113084 eV Total energy + Delta-G solvation = -2536.237966 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.57645 -37.75978 -34.66658 -33.35500 -32.87278 -30.35729 -28.55945 -27.75186 -26.20686 -24.62164 -22.73867 -21.85179 -21.47464 -19.22430 -18.28391 -16.79468 -16.68751 -16.01871 -15.81225 -15.76481 -14.91755 -14.47331 -14.33696 -14.28418 -13.59315 -13.48309 -13.36346 -13.08861 -12.93963 -12.79267 -12.68541 -12.64273 -12.56363 -12.21521 -12.02433 -11.90369 -11.71506 -11.53306 -11.30247 -11.16532 -10.98574 -10.85863 -10.74855 -10.43041 -8.87594 -8.06344 -6.18409 1.39440 1.40893 1.48730 2.43007 3.17927 3.57093 3.82508 3.90073 4.12076 4.24215 4.34193 4.48710 4.50158 4.57392 4.57937 4.62325 4.70318 4.78938 4.78993 4.83790 4.87608 5.04876 5.09839 5.11626 5.15888 5.21257 5.23261 5.25980 5.28600 5.35485 5.38453 5.46000 5.55970 5.62085 5.66443 5.74242 5.79060 5.92547 6.39104 6.58557 6.96532 7.08733 7.50770 8.96255 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.024483 B = 0.007161 C = 0.006148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.380720 B = 3908.996724 C = 4553.414229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.122 4.122 3 C 0.229 3.771 4 H -0.033 1.033 5 C -0.512 4.512 6 H 0.046 0.954 7 C 0.009 3.991 8 N -0.920 5.920 9 Si 0.953 3.047 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.276 1.276 13 N -0.685 5.685 14 C 0.096 3.904 15 H 0.037 0.963 16 C -0.137 4.137 17 C -0.108 4.108 18 C -0.079 4.079 19 H 0.080 0.920 20 C -0.148 4.148 21 C -0.087 4.087 22 H 0.051 0.949 23 C -0.141 4.141 24 C -0.089 4.089 25 H 0.058 0.942 26 H 0.034 0.966 27 H 0.056 0.944 28 H 0.066 0.934 29 H 0.035 0.965 30 H 0.260 0.740 31 H 0.326 0.674 32 H 0.074 0.926 33 H 0.031 0.969 34 H 0.071 0.929 35 H 0.046 0.954 36 H 0.052 0.948 37 H 0.067 0.933 38 H 0.058 0.942 39 H 0.066 0.934 40 H 0.048 0.952 41 H 0.064 0.936 42 H 0.044 0.956 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.835 10.318 8.900 15.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.160 4.160 3 C 0.121 3.879 4 H -0.015 1.015 5 C -0.551 4.551 6 H 0.064 0.936 7 C -0.189 4.189 8 N -0.560 5.560 9 Si 0.779 3.221 10 H -0.198 1.198 11 H -0.207 1.207 12 H -0.201 1.201 13 N -0.315 5.315 14 C -0.014 4.014 15 H 0.055 0.945 16 C -0.176 4.176 17 C -0.146 4.146 18 C -0.097 4.097 19 H 0.098 0.902 20 C -0.205 4.205 21 C -0.106 4.106 22 H 0.070 0.930 23 C -0.198 4.198 24 C -0.127 4.127 25 H 0.077 0.923 26 H 0.053 0.947 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.144 0.856 32 H 0.093 0.907 33 H 0.050 0.950 34 H 0.090 0.910 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.067 0.933 41 H 0.083 0.917 42 H 0.063 0.937 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.161 10.208 8.973 15.362 hybrid contribution 0.446 -0.311 -1.256 1.368 sum -6.716 9.897 7.717 14.234 Atomic orbital electron populations 1.21728 0.96234 1.00996 1.00445 1.21594 0.94275 0.99165 1.01011 1.18864 0.93611 0.90437 0.84993 1.01533 1.21471 0.93119 1.36445 1.04040 0.93608 1.25669 1.02194 0.95412 0.95604 1.69998 1.36207 1.39986 1.09846 0.85695 0.80957 0.78172 0.77289 1.19819 1.20740 1.20137 1.60695 1.36056 1.03793 1.30981 1.21429 0.95143 0.88039 0.96796 0.94495 1.22179 0.98122 0.97305 1.00035 1.21501 1.01419 0.94046 0.97655 1.21074 0.94557 0.99786 0.94273 0.90201 1.21950 0.97941 1.01527 0.99067 1.21128 0.97065 0.94458 0.97964 0.93001 1.21819 1.01562 1.00438 0.95946 1.21483 1.01046 0.94281 0.95933 0.92317 0.94654 0.92499 0.91582 0.94646 0.93104 0.85568 0.90706 0.94988 0.90991 0.93546 0.92880 0.91392 0.92281 0.91528 0.93303 0.91681 0.93722 0.91128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.24 9.63 71.98 0.69 -4.55 16 2 C -0.12 -5.90 5.37 30.59 0.16 -5.74 16 3 C 0.23 11.82 1.84 44.17 0.08 11.90 16 4 H -0.03 -1.89 7.19 -2.39 -0.02 -1.91 16 5 C -0.51 -29.49 8.46 25.60 0.22 -29.28 16 6 H 0.05 2.70 7.81 -2.91 -0.02 2.67 16 7 C 0.01 0.52 5.29 84.65 0.45 0.97 16 8 N -0.92 -54.23 11.29 21.45 0.24 -53.99 16 9 Si 0.95 45.39 29.54 68.60 2.03 47.42 16 10 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 11 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 12 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 13 N -0.69 -29.49 6.04 -473.28 -2.86 -32.35 16 14 C 0.10 3.67 2.27 44.92 0.10 3.77 16 15 H 0.04 1.70 7.60 -2.39 -0.02 1.68 16 16 C -0.14 -4.44 4.88 30.60 0.15 -4.29 16 17 C -0.11 -2.88 5.45 30.60 0.17 -2.71 16 18 C -0.08 -1.75 2.72 -10.79 -0.03 -1.78 16 19 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 20 C -0.15 -2.85 8.15 71.98 0.59 -2.27 16 21 C -0.09 -2.22 2.49 -10.79 -0.03 -2.25 16 22 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 23 C -0.14 -2.85 8.84 71.98 0.64 -2.21 16 24 C -0.09 -2.79 4.54 30.60 0.14 -2.65 16 25 H 0.06 1.96 6.68 -2.39 -0.02 1.94 16 26 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.07 3.64 5.94 -2.39 -0.01 3.63 16 29 H 0.03 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 31 H 0.33 12.57 6.34 -89.70 -0.57 12.00 16 32 H 0.07 2.15 6.41 -2.39 -0.02 2.13 16 33 H 0.03 1.19 7.49 -2.39 -0.02 1.17 16 34 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.05 1.14 4.81 -2.39 -0.01 1.13 16 37 H 0.07 1.13 6.43 -2.39 -0.02 1.11 16 38 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.07 1.21 6.43 -2.38 -0.02 1.20 16 40 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 41 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.07 2.00 6.43 -2.39 -0.02 1.99 16 Total: -1.00 -61.49 315.55 3.12 -58.37 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: 0.39 Total: 21.64 kcal Atomic # 6 Polarization: -44.41 SS G_CDS: 3.33 Total: -41.09 kcal Atomic # 7 Polarization: -83.73 SS G_CDS: -2.62 Total: -86.35 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -61.49 3.12 -58.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220677861.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.891 kcal (2) G-P(sol) polarization free energy of solvation -61.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds