Wall clock time and date at job start Mon Mar 30 2020 05:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47244 * 2 1 4 4 H 1.09001 * 109.47339 * 305.00289 * 3 2 1 5 5 C 1.52996 * 109.47523 * 184.99955 * 3 2 1 6 6 N 1.46901 * 109.47406 * 64.99834 * 3 2 1 7 7 C 1.46853 * 110.99632 * 80.40677 * 6 3 2 8 8 C 1.53036 * 109.52455 * 185.80607 * 7 6 3 9 9 H 1.09003 * 109.50516 * 60.84093 * 8 7 6 10 10 C 1.50700 * 109.50138 * 180.92084 * 8 7 6 11 11 H 1.07999 * 120.00240 * 359.92194 * 10 8 7 12 12 C 1.37882 * 119.99791 * 179.91894 * 10 8 7 13 13 N 1.31511 * 119.99858 * 0.02562 * 12 10 8 14 14 Si 1.86802 * 119.99884 * 180.02562 * 12 10 8 15 15 H 1.48506 * 109.46766 * 180.02562 * 14 12 10 16 16 H 1.48501 * 109.46782 * 299.99892 * 14 12 10 17 17 H 1.48492 * 109.47078 * 60.00073 * 14 12 10 18 18 C 1.53122 * 109.30839 * 300.88245 * 8 7 6 19 19 C 1.53113 * 109.15982 * 57.63345 * 18 8 7 20 20 C 1.46845 * 111.00511 * 204.65784 * 6 3 2 21 21 C 1.52999 * 109.45739 * 54.14602 * 20 6 3 22 22 C 1.52999 * 109.46247 * 294.17760 * 20 6 3 23 23 H 1.08998 * 109.46749 * 59.99975 * 1 2 3 24 24 H 1.08995 * 109.47147 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46927 * 300.00084 * 1 2 3 26 26 H 1.08999 * 109.46927 * 239.99916 * 2 1 3 27 27 H 1.09008 * 109.46838 * 119.99814 * 2 1 3 28 28 H 1.08993 * 109.47872 * 176.82862 * 5 3 2 29 29 H 1.09001 * 109.47011 * 296.83138 * 5 3 2 30 30 H 1.09001 * 109.47251 * 56.82682 * 5 3 2 31 31 H 1.08995 * 109.42683 * 65.80838 * 7 6 3 32 32 H 1.09002 * 109.49390 * 305.84448 * 7 6 3 33 33 H 0.97000 * 120.00020 * 180.02562 * 13 12 10 34 34 H 1.09004 * 109.51964 * 177.54264 * 18 8 7 35 35 H 1.09005 * 109.51998 * 297.72649 * 18 8 7 36 36 H 1.08996 * 109.50442 * 62.29247 * 19 18 8 37 37 H 1.09007 * 109.49993 * 182.36505 * 19 18 8 38 38 H 1.09005 * 109.46827 * 172.13207 * 21 20 6 39 39 H 1.09005 * 109.47419 * 292.12579 * 21 20 6 40 40 H 1.08998 * 109.47588 * 52.13192 * 21 20 6 41 41 H 1.08995 * 109.47032 * 315.48501 * 22 20 6 42 42 H 1.08997 * 109.47273 * 75.48630 * 22 20 6 43 43 H 1.08999 * 109.46640 * 195.48268 * 22 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4444 -0.1257 6 7 1.6514 2.0993 1.2552 7 6 2.5652 1.7338 2.3452 8 6 2.0490 2.3171 3.6625 9 1 1.0626 1.9074 3.8802 10 6 2.9989 1.9608 4.7769 11 1 3.8821 1.3756 4.5672 12 6 2.7405 2.3820 6.0641 13 7 1.6649 3.0942 6.3194 14 14 3.9184 1.9410 7.4453 15 1 3.4175 2.5084 8.7230 16 1 4.0119 0.4637 7.5632 17 1 5.2615 2.5000 7.1477 18 6 1.9540 3.8403 3.5391 19 6 1.0345 4.1931 2.3667 20 6 1.5805 3.5563 1.0868 21 6 0.6536 3.8896 -0.0840 22 6 2.9799 4.1052 0.8012 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8901 28 1 3.9235 2.4720 -0.1824 29 1 4.0017 0.9545 0.7445 30 1 3.8556 0.9077 -1.0288 31 1 3.5576 2.1327 2.1354 32 1 2.6198 0.6481 2.4253 33 1 1.4832 3.3909 7.2249 34 1 1.5455 4.2557 4.4604 35 1 2.9467 4.2539 3.3607 36 1 0.0320 3.8130 2.5634 37 1 0.9961 5.2760 2.2474 38 1 0.4898 4.9666 -0.1224 39 1 1.1118 3.5583 -1.0159 40 1 -0.3010 3.3815 0.0523 41 1 3.6966 3.6443 1.4808 42 1 3.2565 3.8770 -0.2281 43 1 2.9832 5.1853 0.9473 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259534652.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:25 Heat of formation + Delta-G solvation = -6.189098 kcal Electronic energy + Delta-G solvation = -19184.032331 eV Core-core repulsion = 16649.801699 eV Total energy + Delta-G solvation = -2534.230632 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.82806 -35.20816 -33.64663 -31.33583 -30.83357 -28.70720 -27.21991 -26.94916 -24.27231 -23.13544 -22.56756 -20.19274 -19.43488 -17.27324 -16.37109 -15.62891 -14.80641 -14.46083 -14.07440 -13.86068 -13.29661 -13.14479 -12.99351 -12.75844 -12.32750 -12.06907 -11.86172 -11.62843 -11.39808 -11.16704 -11.08922 -11.03520 -10.88996 -10.74277 -10.61340 -10.42472 -10.22102 -10.11155 -9.83328 -9.61293 -9.29571 -8.84172 -8.60781 -8.24510 -7.42132 -5.92654 -3.98444 3.34243 3.39012 3.41439 4.42609 4.58842 5.14002 5.32886 5.36461 5.42956 5.53497 5.60491 5.69072 5.75879 5.83330 5.96083 5.98209 6.01021 6.13269 6.17884 6.26506 6.28792 6.34393 6.38365 6.43084 6.43150 6.56466 6.60970 6.67059 6.71689 6.77490 6.87485 6.96603 7.11866 7.31853 7.51230 7.80141 7.86237 8.02360 8.17746 8.24989 8.55403 9.05913 9.65471 11.13112 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.027042 B = 0.007926 C = 0.007251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.167105 B = 3531.704176 C = 3860.484633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.109 4.109 3 C 0.072 3.928 4 H 0.076 0.924 5 C -0.200 4.200 6 N -0.517 5.517 7 C 0.063 3.937 8 C 0.056 3.944 9 H 0.031 0.969 10 C -0.513 4.513 11 H 0.051 0.949 12 C 0.063 3.937 13 N -0.888 5.888 14 Si 0.888 3.112 15 H -0.288 1.288 16 H -0.278 1.278 17 H -0.279 1.279 18 C -0.109 4.109 19 C -0.103 4.103 20 C 0.111 3.889 21 C -0.139 4.139 22 C -0.182 4.182 23 H 0.042 0.958 24 H 0.040 0.960 25 H 0.070 0.930 26 H 0.051 0.949 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.045 0.955 31 H 0.030 0.970 32 H 0.056 0.944 33 H 0.259 0.741 34 H 0.088 0.912 35 H 0.031 0.969 36 H 0.058 0.942 37 H 0.043 0.957 38 H 0.052 0.948 39 H 0.048 0.952 40 H 0.060 0.940 41 H 0.070 0.930 42 H 0.050 0.950 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.434 -0.405 -12.520 12.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.147 4.147 3 C -0.037 4.037 4 H 0.094 0.906 5 C -0.258 4.258 6 N -0.240 5.240 7 C -0.064 4.064 8 C 0.037 3.963 9 H 0.049 0.951 10 C -0.552 4.552 11 H 0.069 0.931 12 C -0.138 4.138 13 N -0.527 5.527 14 Si 0.716 3.284 15 H -0.214 1.214 16 H -0.204 1.204 17 H -0.205 1.205 18 C -0.147 4.147 19 C -0.141 4.141 20 C 0.021 3.979 21 C -0.197 4.197 22 C -0.241 4.241 23 H 0.061 0.939 24 H 0.059 0.941 25 H 0.090 0.910 26 H 0.069 0.931 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.065 0.935 31 H 0.048 0.952 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.106 0.894 35 H 0.050 0.950 36 H 0.077 0.923 37 H 0.062 0.938 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.080 0.920 41 H 0.089 0.911 42 H 0.069 0.931 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.014 -0.487 -12.233 12.284 hybrid contribution 1.562 0.061 0.584 1.669 sum 0.548 -0.425 -11.648 11.669 Atomic orbital electron populations 1.21631 0.95700 1.00207 1.02270 1.21489 0.96431 0.95910 1.00913 1.21802 0.92897 0.95330 0.93641 0.90580 1.22908 0.98384 1.02908 1.01631 1.62327 1.51171 1.06380 1.04160 1.22381 0.93188 0.99084 0.91714 1.18643 0.96840 0.91565 0.89246 0.95086 1.21126 1.08249 1.33321 0.92504 0.93075 1.24920 0.95209 0.95171 0.98481 1.69883 1.25760 1.36834 1.20223 0.86735 0.81362 0.78699 0.81616 1.21361 1.20378 1.20461 1.21650 0.96388 0.99741 0.96948 1.21695 1.00440 0.97307 0.94670 1.20969 0.93357 0.87962 0.95565 1.21978 1.00009 1.00608 0.97067 1.22791 0.99534 1.01126 1.00606 0.93922 0.94112 0.91048 0.93053 0.91932 0.91307 0.91801 0.93549 0.95245 0.92557 0.93100 0.89395 0.95015 0.92308 0.93846 0.92914 0.93311 0.92047 0.91082 0.93122 0.93140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.80 37.16 0.36 -1.57 16 2 C -0.11 -1.56 5.50 -26.73 -0.15 -1.70 16 3 C 0.07 1.08 1.94 -67.72 -0.13 0.95 16 4 H 0.08 1.08 5.30 -51.93 -0.28 0.81 16 5 C -0.20 -2.89 7.87 37.16 0.29 -2.60 16 6 N -0.52 -9.18 3.79 -211.14 -0.80 -9.98 16 7 C 0.06 1.31 3.09 -3.83 -0.01 1.30 16 8 C 0.06 1.39 2.26 -91.69 -0.21 1.18 16 9 H 0.03 0.87 8.14 -51.93 -0.42 0.44 16 10 C -0.51 -14.05 8.56 -34.44 -0.29 -14.34 16 11 H 0.05 1.38 7.74 -52.49 -0.41 0.98 16 12 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 13 N -0.89 -25.42 11.36 55.43 0.63 -24.79 16 14 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 15 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 C -0.11 -2.56 4.73 -26.61 -0.13 -2.69 16 19 C -0.10 -2.01 4.83 -26.66 -0.13 -2.14 16 20 C 0.11 1.89 0.68 -131.62 -0.09 1.80 16 21 C -0.14 -1.98 7.90 37.16 0.29 -1.69 16 22 C -0.18 -2.95 6.09 37.16 0.23 -2.72 16 23 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.07 1.14 7.75 -51.93 -0.40 0.74 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.98 6.98 -51.92 -0.36 0.62 16 28 H 0.07 0.99 4.28 -51.93 -0.22 0.77 16 29 H 0.06 1.01 6.24 -51.93 -0.32 0.69 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.03 0.62 4.47 -51.93 -0.23 0.39 16 32 H 0.06 1.20 6.85 -51.93 -0.36 0.84 16 33 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 34 H 0.09 2.33 6.16 -51.93 -0.32 2.01 16 35 H 0.03 0.74 6.93 -51.93 -0.36 0.38 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.04 0.78 8.14 -51.92 -0.42 0.35 16 38 H 0.05 0.69 8.13 -51.93 -0.42 0.27 16 39 H 0.05 0.63 6.16 -51.93 -0.32 0.31 16 40 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.07 1.29 4.67 -51.93 -0.24 1.05 16 42 H 0.05 0.73 5.87 -51.93 -0.30 0.42 16 43 H 0.05 0.78 8.04 -51.93 -0.42 0.37 16 LS Contribution 303.59 15.07 4.58 4.58 Total: -1.00 -27.20 303.59 -8.16 -35.36 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -7.48 Total: 1.04 kcal Atomic # 6 Polarization: -22.52 SS G_CDS: -0.06 Total: -22.58 kcal Atomic # 7 Polarization: -34.60 SS G_CDS: -0.17 Total: -34.77 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -27.20 -8.16 -35.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259534652.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.167 kcal (2) G-P(sol) polarization free energy of solvation -27.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds