Wall clock time and date at job start Mon Mar 30 2020 05:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47244 * 2 1 4 4 H 1.09001 * 109.47339 * 305.00289 * 3 2 1 5 5 C 1.52996 * 109.47523 * 184.99955 * 3 2 1 6 6 N 1.46901 * 109.47406 * 64.99834 * 3 2 1 7 7 C 1.46853 * 110.99632 * 80.40677 * 6 3 2 8 8 C 1.53036 * 109.52455 * 185.80607 * 7 6 3 9 9 H 1.09003 * 109.50516 * 60.84093 * 8 7 6 10 10 C 1.50700 * 109.50138 * 180.92084 * 8 7 6 11 11 H 1.07999 * 120.00240 * 359.92194 * 10 8 7 12 12 C 1.37882 * 119.99791 * 179.91894 * 10 8 7 13 13 N 1.31511 * 119.99858 * 0.02562 * 12 10 8 14 14 Si 1.86802 * 119.99884 * 180.02562 * 12 10 8 15 15 H 1.48506 * 109.46766 * 180.02562 * 14 12 10 16 16 H 1.48501 * 109.46782 * 299.99892 * 14 12 10 17 17 H 1.48492 * 109.47078 * 60.00073 * 14 12 10 18 18 C 1.53122 * 109.30839 * 300.88245 * 8 7 6 19 19 C 1.53113 * 109.15982 * 57.63345 * 18 8 7 20 20 C 1.46845 * 111.00511 * 204.65784 * 6 3 2 21 21 C 1.52999 * 109.45739 * 54.14602 * 20 6 3 22 22 C 1.52999 * 109.46247 * 294.17760 * 20 6 3 23 23 H 1.08998 * 109.46749 * 59.99975 * 1 2 3 24 24 H 1.08995 * 109.47147 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46927 * 300.00084 * 1 2 3 26 26 H 1.08999 * 109.46927 * 239.99916 * 2 1 3 27 27 H 1.09008 * 109.46838 * 119.99814 * 2 1 3 28 28 H 1.08993 * 109.47872 * 176.82862 * 5 3 2 29 29 H 1.09001 * 109.47011 * 296.83138 * 5 3 2 30 30 H 1.09001 * 109.47251 * 56.82682 * 5 3 2 31 31 H 1.08995 * 109.42683 * 65.80838 * 7 6 3 32 32 H 1.09002 * 109.49390 * 305.84448 * 7 6 3 33 33 H 0.97000 * 120.00020 * 180.02562 * 13 12 10 34 34 H 1.09004 * 109.51964 * 177.54264 * 18 8 7 35 35 H 1.09005 * 109.51998 * 297.72649 * 18 8 7 36 36 H 1.08996 * 109.50442 * 62.29247 * 19 18 8 37 37 H 1.09007 * 109.49993 * 182.36505 * 19 18 8 38 38 H 1.09005 * 109.46827 * 172.13207 * 21 20 6 39 39 H 1.09005 * 109.47419 * 292.12579 * 21 20 6 40 40 H 1.08998 * 109.47588 * 52.13192 * 21 20 6 41 41 H 1.08995 * 109.47032 * 315.48501 * 22 20 6 42 42 H 1.08997 * 109.47273 * 75.48630 * 22 20 6 43 43 H 1.08999 * 109.46640 * 195.48268 * 22 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4444 -0.1257 6 7 1.6514 2.0993 1.2552 7 6 2.5652 1.7338 2.3452 8 6 2.0490 2.3171 3.6625 9 1 1.0626 1.9074 3.8802 10 6 2.9989 1.9608 4.7769 11 1 3.8821 1.3756 4.5672 12 6 2.7405 2.3820 6.0641 13 7 1.6649 3.0942 6.3194 14 14 3.9184 1.9410 7.4453 15 1 3.4175 2.5084 8.7230 16 1 4.0119 0.4637 7.5632 17 1 5.2615 2.5000 7.1477 18 6 1.9540 3.8403 3.5391 19 6 1.0345 4.1931 2.3667 20 6 1.5805 3.5563 1.0868 21 6 0.6536 3.8896 -0.0840 22 6 2.9799 4.1052 0.8012 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8901 28 1 3.9235 2.4720 -0.1824 29 1 4.0017 0.9545 0.7445 30 1 3.8556 0.9077 -1.0288 31 1 3.5576 2.1327 2.1354 32 1 2.6198 0.6481 2.4253 33 1 1.4832 3.3909 7.2249 34 1 1.5455 4.2557 4.4604 35 1 2.9467 4.2539 3.3607 36 1 0.0320 3.8130 2.5634 37 1 0.9961 5.2760 2.2474 38 1 0.4898 4.9666 -0.1224 39 1 1.1118 3.5583 -1.0159 40 1 -0.3010 3.3815 0.0523 41 1 3.6966 3.6443 1.4808 42 1 3.2565 3.8770 -0.2281 43 1 2.9832 5.1853 0.9473 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259534652.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:25 Heat of formation + Delta-G solvation = -20.956391 kcal Electronic energy + Delta-G solvation = -19184.672688 eV Core-core repulsion = 16649.801699 eV Total energy + Delta-G solvation = -2534.870990 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.27577 -36.72711 -35.36391 -33.13093 -32.27538 -30.01111 -28.88855 -28.28154 -26.03180 -24.61698 -23.98099 -21.83237 -20.86893 -18.82683 -18.39196 -17.10094 -16.44522 -16.17859 -15.48698 -15.19833 -14.78938 -14.63933 -14.27210 -14.09435 -13.99111 -13.63985 -13.27131 -13.14598 -12.86099 -12.80537 -12.53841 -12.50682 -12.38040 -12.25089 -12.11948 -11.86803 -11.71420 -11.58915 -11.35084 -11.16268 -11.12808 -10.59122 -10.49515 -10.33067 -8.85398 -8.06134 -6.20060 1.39969 1.41185 1.48728 2.42846 3.17035 3.20314 3.92822 4.04202 4.13428 4.30578 4.35721 4.44042 4.52893 4.59461 4.64390 4.74744 4.78813 4.82225 4.86707 4.88752 4.93113 5.00223 5.06174 5.07700 5.13890 5.19387 5.26989 5.29255 5.32149 5.43328 5.46397 5.49739 5.59663 5.63332 5.63919 5.68342 6.05843 6.22426 6.31702 6.57258 6.64132 6.94165 7.47462 8.97930 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.027042 B = 0.007926 C = 0.007251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.167105 B = 3531.704176 C = 3860.484633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.109 4.109 3 C 0.072 3.928 4 H 0.097 0.903 5 C -0.196 4.196 6 N -0.525 5.525 7 C 0.083 3.917 8 C 0.055 3.945 9 H -0.012 1.012 10 C -0.534 4.534 11 H 0.048 0.952 12 C 0.014 3.986 13 N -0.915 5.915 14 Si 0.950 3.050 15 H -0.284 1.284 16 H -0.273 1.273 17 H -0.272 1.272 18 C -0.099 4.099 19 C -0.098 4.098 20 C 0.109 3.891 21 C -0.132 4.132 22 C -0.176 4.176 23 H 0.060 0.940 24 H 0.050 0.950 25 H 0.041 0.959 26 H 0.077 0.923 27 H 0.039 0.961 28 H 0.070 0.930 29 H 0.042 0.958 30 H 0.070 0.930 31 H 0.030 0.970 32 H 0.044 0.956 33 H 0.259 0.741 34 H 0.051 0.949 35 H 0.025 0.975 36 H 0.043 0.957 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.057 0.943 41 H 0.045 0.955 42 H 0.076 0.924 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.173 -0.310 -14.856 14.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.147 4.147 3 C -0.036 4.036 4 H 0.115 0.885 5 C -0.254 4.254 6 N -0.249 5.249 7 C -0.044 4.044 8 C 0.036 3.964 9 H 0.006 0.994 10 C -0.573 4.573 11 H 0.066 0.934 12 C -0.184 4.184 13 N -0.554 5.554 14 Si 0.776 3.224 15 H -0.209 1.209 16 H -0.198 1.198 17 H -0.197 1.197 18 C -0.137 4.137 19 C -0.136 4.136 20 C 0.019 3.981 21 C -0.189 4.189 22 C -0.234 4.234 23 H 0.079 0.921 24 H 0.069 0.931 25 H 0.060 0.940 26 H 0.096 0.904 27 H 0.057 0.943 28 H 0.088 0.912 29 H 0.061 0.939 30 H 0.089 0.911 31 H 0.047 0.953 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.044 0.956 36 H 0.062 0.938 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.076 0.924 41 H 0.064 0.936 42 H 0.094 0.906 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.406 -0.396 -14.584 14.595 hybrid contribution 1.340 0.015 1.314 1.877 sum 0.935 -0.381 -13.270 13.308 Atomic orbital electron populations 1.21574 0.95381 1.00759 1.01643 1.21509 0.96694 0.95463 1.01032 1.21936 0.93603 0.95665 0.92431 0.88516 1.22842 0.97567 1.03117 1.01867 1.62236 1.50458 1.07363 1.04854 1.21958 0.93511 0.97883 0.91073 1.18557 0.94149 0.92605 0.91066 0.99409 1.21506 1.08617 1.33369 0.93819 0.93379 1.25698 0.96776 0.95091 1.00869 1.70038 1.27229 1.37571 1.20588 0.85736 0.79441 0.78573 0.78636 1.20912 1.19815 1.19690 1.21410 0.96669 0.98415 0.97189 1.21620 0.98597 0.98718 0.94639 1.21023 0.94649 0.87166 0.95233 1.21907 0.99032 1.01718 0.96229 1.22714 0.98024 1.01249 1.01443 0.92132 0.93088 0.93952 0.90433 0.94257 0.91163 0.93933 0.91068 0.95255 0.93764 0.93180 0.93050 0.95599 0.93848 0.91973 0.91361 0.91150 0.92434 0.93611 0.90584 0.92449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.51 9.80 71.98 0.71 -2.81 16 2 C -0.11 -2.89 5.50 30.59 0.17 -2.72 16 3 C 0.07 1.97 1.94 44.91 0.09 2.06 16 4 H 0.10 2.32 5.30 -2.39 -0.01 2.31 16 5 C -0.20 -5.15 7.87 71.98 0.57 -4.59 16 6 N -0.53 -18.34 3.79 -821.92 -3.12 -21.45 16 7 C 0.08 3.55 3.09 86.32 0.27 3.82 16 8 C 0.06 2.86 2.26 -11.49 -0.03 2.84 16 9 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 10 C -0.53 -30.36 8.56 25.60 0.22 -30.14 16 11 H 0.05 2.68 7.74 -2.91 -0.02 2.66 16 12 C 0.01 0.81 5.30 84.66 0.45 1.26 16 13 N -0.91 -54.33 11.36 21.45 0.24 -54.08 16 14 Si 0.95 44.66 29.54 68.60 2.03 46.69 16 15 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 16 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 17 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 18 C -0.10 -4.80 4.73 30.67 0.15 -4.66 16 19 C -0.10 -3.83 4.83 30.64 0.15 -3.68 16 20 C 0.11 3.52 0.68 3.55 0.00 3.52 16 21 C -0.13 -3.29 7.90 71.98 0.57 -2.72 16 22 C -0.18 -5.30 6.09 71.98 0.44 -4.86 16 23 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 24 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.04 1.33 7.75 -2.39 -0.02 1.31 16 26 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.04 1.22 6.98 -2.38 -0.02 1.20 16 28 H 0.07 1.82 4.28 -2.39 -0.01 1.81 16 29 H 0.04 1.30 6.24 -2.39 -0.01 1.28 16 30 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.03 1.26 4.47 -2.39 -0.01 1.25 16 32 H 0.04 1.95 6.85 -2.39 -0.02 1.94 16 33 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 34 H 0.05 2.86 6.16 -2.38 -0.01 2.85 16 35 H 0.03 1.25 6.93 -2.38 -0.02 1.23 16 36 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 38 H 0.07 1.52 8.13 -2.38 -0.02 1.50 16 39 H 0.07 1.48 6.16 -2.38 -0.01 1.46 16 40 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.04 1.62 4.67 -2.39 -0.01 1.60 16 42 H 0.08 1.90 5.87 -2.39 -0.01 1.89 16 43 H 0.06 1.64 8.04 -2.39 -0.02 1.62 16 Total: -1.00 -61.09 303.59 3.86 -57.23 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: 0.96 Total: 14.29 kcal Atomic # 6 Polarization: -46.42 SS G_CDS: 3.74 Total: -42.68 kcal Atomic # 7 Polarization: -72.66 SS G_CDS: -2.87 Total: -75.54 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -61.09 3.86 -57.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259534652.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.278 kcal (2) G-P(sol) polarization free energy of solvation -61.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds