Wall clock time and date at job start Mon Mar 30 2020 05:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46713 * 2 1 4 4 C 1.50694 * 109.47304 * 120.00141 * 2 1 3 5 5 H 1.07998 * 120.00042 * 120.00720 * 4 2 1 6 6 C 1.37885 * 119.99937 * 300.00173 * 4 2 1 7 7 N 1.31515 * 119.99880 * 180.02562 * 6 4 2 8 8 Si 1.86801 * 120.00007 * 359.97438 * 6 4 2 9 9 H 1.48497 * 109.46784 * 89.99881 * 8 6 4 10 10 H 1.48498 * 109.47026 * 209.99900 * 8 6 4 11 11 H 1.48498 * 109.46916 * 330.00358 * 8 6 4 12 12 N 1.46900 * 109.47123 * 240.00547 * 2 1 3 13 13 C 1.46901 * 110.99783 * 306.04040 * 12 2 1 14 14 C 1.46894 * 111.00559 * 69.99762 * 12 2 1 15 15 H 1.08998 * 109.46828 * 300.00600 * 14 12 2 16 16 C 1.53006 * 109.47224 * 59.99726 * 14 12 2 17 17 C 1.52997 * 109.47164 * 180.02562 * 16 14 12 18 18 C 1.53002 * 109.46978 * 299.99874 * 17 16 14 19 19 H 1.09004 * 109.47006 * 180.02562 * 18 17 16 20 20 C 1.52993 * 109.47392 * 299.99957 * 18 17 16 21 21 C 1.52996 * 109.46891 * 60.00410 * 18 17 16 22 22 H 1.09001 * 109.47372 * 59.99964 * 21 18 17 23 23 C 1.53001 * 109.47302 * 179.97438 * 21 18 17 24 24 C 1.52997 * 109.47515 * 180.02562 * 14 12 2 25 25 H 1.08996 * 109.47083 * 60.00100 * 1 2 3 26 26 H 1.09000 * 109.46713 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46777 * 299.99715 * 1 2 3 28 28 H 0.96996 * 120.00057 * 179.97438 * 7 6 4 29 29 H 1.09000 * 109.47027 * 183.95956 * 13 12 2 30 30 H 1.08995 * 109.47279 * 303.95640 * 13 12 2 31 31 H 1.08999 * 109.47006 * 63.95628 * 13 12 2 32 32 H 1.09001 * 109.47002 * 60.00120 * 16 14 12 33 33 H 1.09000 * 109.47050 * 300.00387 * 16 14 12 34 34 H 1.09002 * 109.47045 * 180.02562 * 17 16 14 35 35 H 1.09001 * 109.47375 * 59.99966 * 17 16 14 36 36 H 1.09004 * 109.46998 * 179.97438 * 20 18 17 37 37 H 1.09002 * 109.47722 * 300.00185 * 20 18 17 38 38 H 1.09004 * 109.46862 * 60.00135 * 20 18 17 39 39 H 1.09002 * 109.47508 * 179.97438 * 23 21 18 40 40 H 1.09000 * 109.47437 * 300.00386 * 23 21 18 41 41 H 1.09001 * 109.47109 * 59.99598 * 23 21 18 42 42 H 1.09002 * 109.47153 * 59.99762 * 24 14 12 43 43 H 1.09001 * 109.46832 * 299.99953 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6534 -1.5884 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1381 -0.8591 3.5565 8 14 0.6258 1.2798 2.6542 9 1 -0.8020 0.8744 2.6993 10 1 0.9771 1.9953 3.9071 11 1 0.8491 2.1772 1.4923 12 7 2.0197 -0.6924 -1.1995 13 6 1.4344 -2.0354 -1.3079 14 6 1.7529 0.0973 -2.4091 15 1 0.6792 0.2552 -2.5104 16 6 2.4592 1.4503 -2.3009 17 6 2.1809 2.2730 -3.5605 18 6 2.7036 1.5214 -4.7864 19 1 2.5057 2.1078 -5.6837 20 6 4.2107 1.3000 -4.6446 21 6 1.9972 0.1686 -4.8945 22 1 0.9234 0.3263 -4.9956 23 6 2.5194 -0.5829 -6.1208 24 6 2.2754 -0.6548 -3.6347 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.9041 -0.5275 4.4375 29 1 1.8666 -2.5520 -2.1649 30 1 1.6467 -2.5987 -0.3992 31 1 0.3556 -1.9520 -1.4399 32 1 3.5330 1.2925 -2.1995 33 1 2.0866 1.9859 -1.4278 34 1 2.6844 3.2367 -3.4836 35 1 1.1071 2.4308 -3.6615 36 1 4.5830 0.7641 -5.5178 37 1 4.7140 2.2638 -4.5676 38 1 4.4090 0.7138 -3.7472 39 1 2.0165 -1.5469 -6.1976 40 1 2.3209 0.0034 -7.0180 41 1 3.5932 -0.7406 -6.0202 42 1 1.7718 -1.6185 -3.7116 43 1 3.3491 -0.8129 -3.5335 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085025708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:33 Heat of formation + Delta-G solvation = -9.025367 kcal Electronic energy + Delta-G solvation = -18794.762085 eV Core-core repulsion = 16260.408463 eV Total energy + Delta-G solvation = -2534.353622 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.66854 -36.80731 -32.78606 -32.21753 -30.84850 -29.14780 -26.99258 -26.10764 -25.15960 -24.30228 -21.39051 -21.30784 -18.75839 -18.21703 -16.72931 -15.59020 -15.25132 -14.89297 -14.42808 -13.97243 -13.77362 -13.41620 -12.91285 -12.89309 -12.44068 -12.16412 -12.15066 -11.92909 -11.86095 -11.80729 -11.42034 -11.14889 -10.92154 -10.77518 -10.72681 -10.43643 -10.39936 -10.05957 -9.96698 -9.80096 -9.53903 -9.34156 -8.94309 -8.53279 -7.22763 -6.02823 -3.99603 3.27402 3.37550 3.39975 4.42564 4.62559 4.81359 4.86761 5.13377 5.28654 5.30430 5.43385 5.48602 5.54309 5.63962 5.73186 5.77844 5.81788 5.94992 6.01578 6.04081 6.07878 6.12362 6.15886 6.20730 6.24056 6.31764 6.34016 6.35840 6.49175 6.52119 6.56920 6.62536 6.66790 6.78680 6.89940 6.96338 7.26192 7.72085 8.03868 8.18384 8.73003 9.05979 9.60153 11.10558 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.035807 B = 0.006906 C = 0.006467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.776545 B = 4053.459107 C = 4328.815750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.177 3.823 3 H 0.044 0.956 4 C -0.498 4.498 5 H 0.081 0.919 6 C 0.068 3.932 7 N -0.902 5.902 8 Si 0.885 3.115 9 H -0.282 1.282 10 H -0.297 1.297 11 H -0.269 1.269 12 N -0.520 5.520 13 C 0.031 3.969 14 C 0.083 3.917 15 H 0.029 0.971 16 C -0.115 4.115 17 C -0.113 4.113 18 C -0.084 4.084 19 H 0.061 0.939 20 C -0.153 4.153 21 C -0.086 4.086 22 H 0.063 0.937 23 C -0.146 4.146 24 C -0.108 4.108 25 H 0.027 0.973 26 H 0.055 0.945 27 H 0.043 0.957 28 H 0.263 0.737 29 H 0.049 0.951 30 H 0.077 0.923 31 H 0.014 0.986 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.055 0.945 36 H 0.052 0.948 37 H 0.048 0.952 38 H 0.069 0.931 39 H 0.051 0.949 40 H 0.049 0.951 41 H 0.058 0.942 42 H 0.059 0.941 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.533 3.692 -17.085 17.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.070 3.930 3 H 0.062 0.938 4 C -0.536 4.536 5 H 0.099 0.901 6 C -0.133 4.133 7 N -0.541 5.541 8 Si 0.716 3.284 9 H -0.209 1.209 10 H -0.225 1.225 11 H -0.194 1.194 12 N -0.243 5.243 13 C -0.117 4.117 14 C -0.026 4.026 15 H 0.047 0.953 16 C -0.153 4.153 17 C -0.151 4.151 18 C -0.102 4.102 19 H 0.080 0.920 20 C -0.210 4.210 21 C -0.105 4.105 22 H 0.082 0.918 23 C -0.204 4.204 24 C -0.146 4.146 25 H 0.046 0.954 26 H 0.074 0.926 27 H 0.061 0.939 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.096 0.904 31 H 0.032 0.968 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.088 0.912 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.006 3.628 -16.831 17.218 hybrid contribution -1.693 0.920 0.243 1.942 sum -1.699 4.548 -16.588 17.284 Atomic orbital electron populations 1.22811 1.02036 1.00927 0.98679 1.19834 0.88472 0.95666 0.89064 0.93839 1.20969 1.31153 1.13634 0.87836 0.90086 1.24917 0.95950 0.96552 0.95877 1.69881 1.45957 1.40400 0.97815 0.86906 0.80562 0.84088 0.76847 1.20910 1.22488 1.19399 1.62192 1.58498 1.02173 1.01421 1.22310 0.95847 0.91759 1.01828 1.21557 0.96712 0.93469 0.90828 0.95278 1.21661 1.01788 0.95031 0.96813 1.21571 1.00418 0.98244 0.94870 1.21088 0.95668 0.95761 0.97687 0.92043 1.22000 0.95250 1.01444 1.02332 1.21133 0.99453 0.94935 0.94983 0.91831 1.21868 1.01452 0.99816 0.97235 1.21731 1.02158 0.97884 0.92797 0.95407 0.92589 0.93891 0.92737 0.93248 0.90415 0.96774 0.90840 0.91711 0.92244 0.92576 0.92942 0.93265 0.91247 0.93024 0.93192 0.92338 0.92248 0.90940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.14 7.92 37.16 0.29 -3.85 16 2 C 0.18 4.20 1.71 -68.87 -0.12 4.09 16 3 H 0.04 1.07 4.88 -51.93 -0.25 0.82 16 4 C -0.50 -13.98 8.49 -34.44 -0.29 -14.27 16 5 H 0.08 2.49 7.37 -52.49 -0.39 2.10 16 6 C 0.07 1.97 5.45 -17.82 -0.10 1.87 16 7 N -0.90 -27.69 13.96 55.43 0.77 -26.92 16 8 Si 0.88 22.20 24.37 -169.99 -4.14 18.05 16 9 H -0.28 -6.94 6.87 56.52 0.39 -6.55 16 10 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16 11 H -0.27 -6.46 6.53 56.52 0.37 -6.09 16 12 N -0.52 -10.73 4.57 -228.30 -1.04 -11.78 16 13 C 0.03 0.59 8.23 60.07 0.49 1.09 16 14 C 0.08 1.42 1.74 -67.71 -0.12 1.30 16 15 H 0.03 0.52 6.62 -51.93 -0.34 0.18 16 16 C -0.12 -1.87 4.72 -26.73 -0.13 -2.00 16 17 C -0.11 -1.47 5.45 -26.73 -0.15 -1.61 16 18 C -0.08 -0.96 2.72 -90.62 -0.25 -1.21 16 19 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 20 C -0.15 -1.73 8.15 37.15 0.30 -1.43 16 21 C -0.09 -1.02 2.49 -90.60 -0.23 -1.25 16 22 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 23 C -0.15 -1.48 8.84 37.16 0.33 -1.15 16 24 C -0.11 -1.54 3.85 -26.71 -0.10 -1.64 16 25 H 0.03 0.55 6.69 -51.93 -0.35 0.20 16 26 H 0.06 1.23 6.42 -51.93 -0.33 0.89 16 27 H 0.04 1.00 3.27 -51.93 -0.17 0.83 16 28 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 29 H 0.05 0.82 6.23 -51.93 -0.32 0.50 16 30 H 0.08 1.67 6.76 -51.93 -0.35 1.32 16 31 H 0.01 0.26 6.46 -51.93 -0.34 -0.08 16 32 H 0.07 1.22 6.43 -51.93 -0.33 0.89 16 33 H 0.06 1.18 6.20 -51.93 -0.32 0.85 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.05 0.53 6.43 -51.93 -0.33 0.20 16 37 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.89 4.81 -51.93 -0.25 0.64 16 39 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.58 6.43 -51.93 -0.33 0.25 16 42 H 0.06 0.84 6.35 -51.93 -0.33 0.51 16 43 H 0.07 1.07 6.43 -51.93 -0.33 0.74 16 LS Contribution 296.26 15.07 4.46 4.46 Total: -1.00 -29.25 296.26 -7.22 -36.47 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -7.22 Total: -0.23 kcal Atomic # 6 Polarization: -20.00 SS G_CDS: -0.05 Total: -20.05 kcal Atomic # 7 Polarization: -38.43 SS G_CDS: -0.27 Total: -38.70 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.14 Total: 18.05 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -29.25 -7.22 -36.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085025708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.444 kcal (2) G-P(sol) polarization free energy of solvation -29.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds