Wall clock time and date at job start Mon Mar 30 2020 05:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46713 * 2 1 4 4 C 1.50694 * 109.47304 * 120.00141 * 2 1 3 5 5 H 1.07998 * 120.00042 * 120.00720 * 4 2 1 6 6 C 1.37885 * 119.99937 * 300.00173 * 4 2 1 7 7 N 1.31515 * 119.99880 * 180.02562 * 6 4 2 8 8 Si 1.86801 * 120.00007 * 359.97438 * 6 4 2 9 9 H 1.48497 * 109.46784 * 89.99881 * 8 6 4 10 10 H 1.48498 * 109.47026 * 209.99900 * 8 6 4 11 11 H 1.48498 * 109.46916 * 330.00358 * 8 6 4 12 12 N 1.46900 * 109.47123 * 240.00547 * 2 1 3 13 13 C 1.46901 * 110.99783 * 306.04040 * 12 2 1 14 14 C 1.46894 * 111.00559 * 69.99762 * 12 2 1 15 15 H 1.08998 * 109.46828 * 300.00600 * 14 12 2 16 16 C 1.53006 * 109.47224 * 59.99726 * 14 12 2 17 17 C 1.52997 * 109.47164 * 180.02562 * 16 14 12 18 18 C 1.53002 * 109.46978 * 299.99874 * 17 16 14 19 19 H 1.09004 * 109.47006 * 180.02562 * 18 17 16 20 20 C 1.52993 * 109.47392 * 299.99957 * 18 17 16 21 21 C 1.52996 * 109.46891 * 60.00410 * 18 17 16 22 22 H 1.09001 * 109.47372 * 59.99964 * 21 18 17 23 23 C 1.53001 * 109.47302 * 179.97438 * 21 18 17 24 24 C 1.52997 * 109.47515 * 180.02562 * 14 12 2 25 25 H 1.08996 * 109.47083 * 60.00100 * 1 2 3 26 26 H 1.09000 * 109.46713 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46777 * 299.99715 * 1 2 3 28 28 H 0.96996 * 120.00057 * 179.97438 * 7 6 4 29 29 H 1.09000 * 109.47027 * 183.95956 * 13 12 2 30 30 H 1.08995 * 109.47279 * 303.95640 * 13 12 2 31 31 H 1.08999 * 109.47006 * 63.95628 * 13 12 2 32 32 H 1.09001 * 109.47002 * 60.00120 * 16 14 12 33 33 H 1.09000 * 109.47050 * 300.00387 * 16 14 12 34 34 H 1.09002 * 109.47045 * 180.02562 * 17 16 14 35 35 H 1.09001 * 109.47375 * 59.99966 * 17 16 14 36 36 H 1.09004 * 109.46998 * 179.97438 * 20 18 17 37 37 H 1.09002 * 109.47722 * 300.00185 * 20 18 17 38 38 H 1.09004 * 109.46862 * 60.00135 * 20 18 17 39 39 H 1.09002 * 109.47508 * 179.97438 * 23 21 18 40 40 H 1.09000 * 109.47437 * 300.00386 * 23 21 18 41 41 H 1.09001 * 109.47109 * 59.99598 * 23 21 18 42 42 H 1.09002 * 109.47153 * 59.99762 * 24 14 12 43 43 H 1.09001 * 109.46832 * 299.99953 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6534 -1.5884 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1381 -0.8591 3.5565 8 14 0.6258 1.2798 2.6542 9 1 -0.8020 0.8744 2.6993 10 1 0.9771 1.9953 3.9071 11 1 0.8491 2.1772 1.4923 12 7 2.0197 -0.6924 -1.1995 13 6 1.4344 -2.0354 -1.3079 14 6 1.7529 0.0973 -2.4091 15 1 0.6792 0.2552 -2.5104 16 6 2.4592 1.4503 -2.3009 17 6 2.1809 2.2730 -3.5605 18 6 2.7036 1.5214 -4.7864 19 1 2.5057 2.1078 -5.6837 20 6 4.2107 1.3000 -4.6446 21 6 1.9972 0.1686 -4.8945 22 1 0.9234 0.3263 -4.9956 23 6 2.5194 -0.5829 -6.1208 24 6 2.2754 -0.6548 -3.6347 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.9041 -0.5275 4.4375 29 1 1.8666 -2.5520 -2.1649 30 1 1.6467 -2.5987 -0.3992 31 1 0.3556 -1.9520 -1.4399 32 1 3.5330 1.2925 -2.1995 33 1 2.0866 1.9859 -1.4278 34 1 2.6844 3.2367 -3.4836 35 1 1.1071 2.4308 -3.6615 36 1 4.5830 0.7641 -5.5178 37 1 4.7140 2.2638 -4.5676 38 1 4.4090 0.7138 -3.7472 39 1 2.0165 -1.5469 -6.1976 40 1 2.3209 0.0034 -7.0180 41 1 3.5932 -0.7406 -6.0202 42 1 1.7718 -1.6185 -3.7116 43 1 3.3491 -0.8129 -3.5335 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085025708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:32 Heat of formation + Delta-G solvation = -27.501418 kcal Electronic energy + Delta-G solvation = -18795.563267 eV Core-core repulsion = 16260.408463 eV Total energy + Delta-G solvation = -2535.154804 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.89607 -38.29374 -34.77860 -33.27662 -32.49062 -30.60823 -28.05220 -27.37981 -27.19175 -25.60799 -22.91899 -22.46066 -20.33630 -19.31349 -18.75234 -17.10049 -16.87678 -15.97809 -15.86756 -15.47406 -15.21117 -14.95371 -14.41568 -14.18172 -13.93817 -13.53196 -13.45954 -13.37621 -13.15686 -13.03587 -12.72147 -12.64857 -12.55137 -12.16605 -11.93803 -11.88728 -11.74297 -11.49550 -11.44244 -11.10887 -10.97718 -10.89017 -10.74533 -10.60272 -8.86339 -8.27421 -6.28544 1.27140 1.32923 1.42933 2.31025 3.06568 3.23149 3.79772 3.85394 4.03580 4.25334 4.31762 4.37676 4.43435 4.48040 4.52456 4.58537 4.63778 4.66484 4.71924 4.77306 4.83010 4.88221 4.90433 4.98702 5.07228 5.12909 5.16747 5.21490 5.23489 5.25580 5.26222 5.41436 5.42542 5.49319 5.54355 5.59580 5.67484 5.78039 6.10475 6.49646 6.76032 6.80006 7.35648 8.89740 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.035807 B = 0.006906 C = 0.006467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.776545 B = 4053.459107 C = 4328.815750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.182 3.818 3 H 0.038 0.962 4 C -0.499 4.499 5 H 0.037 0.963 6 C 0.011 3.989 7 N -0.950 5.950 8 Si 0.947 3.053 9 H -0.270 1.270 10 H -0.297 1.297 11 H -0.251 1.251 12 N -0.537 5.537 13 C 0.037 3.963 14 C 0.084 3.916 15 H 0.029 0.971 16 C -0.114 4.114 17 C -0.108 4.108 18 C -0.080 4.080 19 H 0.083 0.917 20 C -0.152 4.152 21 C -0.082 4.082 22 H 0.066 0.934 23 C -0.143 4.143 24 C -0.102 4.102 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.034 0.966 28 H 0.265 0.735 29 H 0.076 0.924 30 H 0.044 0.956 31 H 0.022 0.978 32 H 0.062 0.938 33 H 0.041 0.959 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.054 0.946 38 H 0.047 0.953 39 H 0.053 0.947 40 H 0.065 0.935 41 H 0.058 0.942 42 H 0.060 0.940 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.612 5.218 -19.909 20.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.074 3.926 3 H 0.056 0.944 4 C -0.537 4.537 5 H 0.056 0.944 6 C -0.186 4.186 7 N -0.591 5.591 8 Si 0.775 3.225 9 H -0.197 1.197 10 H -0.225 1.225 11 H -0.175 1.175 12 N -0.260 5.260 13 C -0.111 4.111 14 C -0.024 4.024 15 H 0.046 0.954 16 C -0.152 4.152 17 C -0.146 4.146 18 C -0.099 4.099 19 H 0.101 0.899 20 C -0.209 4.209 21 C -0.101 4.101 22 H 0.085 0.915 23 C -0.200 4.200 24 C -0.139 4.139 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.053 0.947 28 H 0.074 0.926 29 H 0.094 0.906 30 H 0.063 0.937 31 H 0.041 0.959 32 H 0.081 0.919 33 H 0.060 0.940 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.084 0.916 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.086 5.152 -19.689 20.380 hybrid contribution -1.266 0.357 1.095 1.711 sum -2.352 5.509 -18.594 19.535 Atomic orbital electron populations 1.22678 1.00472 1.01125 0.99565 1.19592 0.89519 0.94850 0.88643 0.94391 1.21217 1.30069 1.12367 0.90066 0.94424 1.25740 0.97532 0.99843 0.95436 1.70034 1.48026 1.42569 0.98478 0.85885 0.79028 0.80374 0.77257 1.19650 1.22514 1.17472 1.62101 1.59019 1.02928 1.01993 1.22236 0.96509 0.91079 1.01299 1.21679 0.96864 0.93773 0.90134 0.95358 1.21635 1.00854 0.94895 0.97808 1.21546 1.01013 0.98274 0.93736 1.21099 0.95484 0.95610 0.97679 0.89874 1.21974 0.95379 1.01602 1.01897 1.21113 0.99814 0.94869 0.94293 0.91519 1.21831 1.01397 0.99960 0.96810 1.21683 1.01466 0.98074 0.92722 0.92623 0.92805 0.94707 0.92649 0.90552 0.93726 0.95913 0.91920 0.94014 0.91185 0.92035 0.91585 0.92690 0.93396 0.92780 0.91601 0.92295 0.92115 0.91710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.74 7.92 71.98 0.57 -7.17 16 2 C 0.18 8.65 1.71 44.17 0.08 8.72 16 3 H 0.04 1.86 4.88 -2.39 -0.01 1.85 16 4 C -0.50 -28.95 8.49 25.60 0.22 -28.73 16 5 H 0.04 2.45 7.37 -2.91 -0.02 2.43 16 6 C 0.01 0.66 5.45 84.66 0.46 1.12 16 7 N -0.95 -60.34 13.96 21.45 0.30 -60.04 16 8 Si 0.95 45.85 24.37 68.60 1.67 47.53 16 9 H -0.27 -12.51 6.87 99.48 0.68 -11.83 16 10 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 11 H -0.25 -11.30 6.53 99.48 0.65 -10.65 16 12 N -0.54 -22.14 4.57 -876.22 -4.00 -26.15 16 13 C 0.04 1.41 8.23 127.69 1.05 2.47 16 14 C 0.08 2.73 1.74 44.92 0.08 2.81 16 15 H 0.03 0.94 6.62 -2.39 -0.02 0.93 16 16 C -0.11 -3.57 4.72 30.60 0.14 -3.43 16 17 C -0.11 -2.51 5.45 30.59 0.17 -2.34 16 18 C -0.08 -1.58 2.72 -10.80 -0.03 -1.61 16 19 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 20 C -0.15 -3.03 8.15 71.98 0.59 -2.45 16 21 C -0.08 -1.68 2.49 -10.78 -0.03 -1.70 16 22 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 23 C -0.14 -2.37 8.84 71.98 0.64 -1.73 16 24 C -0.10 -2.69 3.85 30.61 0.12 -2.57 16 25 H 0.05 2.06 6.69 -2.39 -0.02 2.05 16 26 H 0.05 2.30 6.42 -2.39 -0.02 2.29 16 27 H 0.03 1.54 3.27 -2.39 -0.01 1.54 16 28 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 29 H 0.08 2.47 6.23 -2.39 -0.01 2.46 16 30 H 0.04 1.98 6.76 -2.39 -0.02 1.97 16 31 H 0.02 0.82 6.46 -2.39 -0.02 0.80 16 32 H 0.06 2.07 6.43 -2.39 -0.02 2.06 16 33 H 0.04 1.48 6.20 -2.39 -0.01 1.46 16 34 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.07 1.13 6.43 -2.39 -0.02 1.12 16 37 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.05 1.17 4.81 -2.38 -0.01 1.16 16 39 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.06 0.98 6.43 -2.39 -0.02 0.96 16 42 H 0.06 1.58 6.35 -2.39 -0.02 1.56 16 43 H 0.06 1.82 6.43 -2.39 -0.02 1.81 16 Total: -1.00 -64.58 296.26 2.91 -61.67 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: 0.90 Total: 13.60 kcal Atomic # 6 Polarization: -40.66 SS G_CDS: 4.05 Total: -36.61 kcal Atomic # 7 Polarization: -82.48 SS G_CDS: -3.71 Total: -86.18 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 1.67 Total: 47.53 kcal Total: -64.58 2.91 -61.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085025708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.170 kcal (2) G-P(sol) polarization free energy of solvation -64.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds