Wall clock time and date at job start Mon Mar 30 2020 06:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.53004 * 109.46707 * 2 1 4 4 C 1.52992 * 109.47360 * 119.99839 * 2 1 3 5 5 C 1.53000 * 109.47108 * 65.90838 * 4 2 1 6 6 C 1.53008 * 112.84935 * 53.02247 * 5 4 2 7 7 N 1.46904 * 109.47076 * 174.38760 * 6 5 4 8 8 C 1.46895 * 110.99620 * 179.97438 * 7 6 5 9 9 H 1.09001 * 109.47416 * 35.00543 * 8 7 6 10 10 C 1.52996 * 109.47411 * 274.99962 * 8 7 6 11 11 C 1.50707 * 109.46924 * 154.99859 * 8 7 6 12 12 H 1.07996 * 119.99840 * 0.02562 * 11 8 7 13 13 C 1.37876 * 119.99827 * 180.02562 * 11 8 7 14 14 N 1.31513 * 119.99711 * 180.02562 * 13 11 8 15 15 Si 1.86805 * 120.00391 * 359.97438 * 13 11 8 16 16 H 1.48492 * 109.47020 * 270.00571 * 15 13 11 17 17 H 1.48504 * 109.46707 * 30.00169 * 15 13 11 18 18 H 1.48493 * 109.46968 * 150.00105 * 15 13 11 19 19 C 1.53778 * 113.69240 * 184.29198 * 5 4 2 20 20 C 1.53781 * 87.08285 * 89.12947 * 19 5 4 21 21 C 1.53781 * 113.61698 * 281.83081 * 5 4 2 22 22 H 1.08997 * 109.46763 * 289.66588 * 1 2 3 23 23 H 1.09002 * 109.46872 * 49.67396 * 1 2 3 24 24 H 1.08994 * 109.46588 * 169.66761 * 1 2 3 25 25 H 1.09003 * 109.46776 * 240.00319 * 2 1 3 26 26 H 1.09000 * 109.46751 * 180.02562 * 3 2 1 27 27 H 1.09004 * 109.46911 * 299.99788 * 3 2 1 28 28 H 1.08996 * 109.47362 * 59.99956 * 3 2 1 29 29 H 1.08997 * 109.47194 * 305.91265 * 4 2 1 30 30 H 1.09002 * 109.47285 * 185.90753 * 4 2 1 31 31 H 1.09000 * 109.46573 * 54.38724 * 6 5 4 32 32 H 1.09002 * 109.47069 * 294.38832 * 6 5 4 33 33 H 1.00900 * 110.99900 * 303.95550 * 7 6 5 34 34 H 1.09004 * 109.47109 * 180.02562 * 10 8 7 35 35 H 1.09001 * 109.47230 * 300.00098 * 10 8 7 36 36 H 1.09003 * 109.47064 * 60.00275 * 10 8 7 37 37 H 0.97001 * 119.99680 * 179.97438 * 14 13 11 38 38 H 1.09005 * 113.61503 * 203.67639 * 19 5 4 39 39 H 1.08996 * 113.61403 * 334.57619 * 19 5 4 40 40 H 1.08997 * 113.61317 * 270.88559 * 20 19 5 41 41 H 1.08993 * 113.69501 * 139.98979 * 20 19 5 42 42 H 1.08999 * 113.61170 * 25.34467 * 21 5 4 43 43 H 1.08998 * 113.62020 * 156.16335 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6550 -2.2002 1.1772 6 6 2.0996 -2.8671 -0.1261 7 7 1.8146 -4.3068 -0.0615 8 6 2.2286 -4.9814 -1.2989 9 1 3.1311 -4.5084 -1.6862 10 6 1.1103 -4.8734 -2.3374 11 6 2.5074 -6.4340 -1.0100 12 1 2.3884 -6.8177 -0.0075 13 6 2.9143 -7.2731 -2.0256 14 7 3.1570 -8.5408 -1.7735 15 14 3.1194 -6.6097 -3.7597 16 1 1.8374 -6.7459 -4.4966 17 1 3.5056 -5.1770 -3.6991 18 1 4.1782 -7.3785 -4.4618 19 6 2.0303 -2.9984 2.4369 20 6 0.6513 -2.6119 2.9970 21 6 0.1852 -2.4723 1.5382 22 1 -0.3633 0.3458 0.9677 23 1 -0.3633 0.6651 -0.7835 24 1 -0.3632 -1.0110 -0.1843 25 1 1.8934 -0.5138 -0.8901 26 1 3.1300 1.4426 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6767 1.9564 0.8899 29 1 1.5930 -0.2721 2.1360 30 1 3.1250 -0.6305 1.3036 31 1 3.1698 -2.7144 -0.2657 32 1 1.5575 -2.4267 -0.9630 33 1 2.2540 -4.7265 0.7441 34 1 1.4174 -5.3745 -3.2555 35 1 0.2079 -5.3465 -1.9501 36 1 0.9087 -3.8228 -2.5464 37 1 3.4429 -9.1312 -2.4881 38 1 2.1450 -4.0676 2.2582 39 1 2.8635 -2.5695 2.9934 40 1 0.6516 -1.6710 3.5472 41 1 0.1566 -3.4185 3.5381 42 1 -0.4711 -1.6186 1.3693 43 1 -0.2051 -3.3968 1.1127 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309075607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:37 Heat of formation + Delta-G solvation = 8.822641 kcal Electronic energy + Delta-G solvation = -18314.151871 eV Core-core repulsion = 15780.572197 eV Total energy + Delta-G solvation = -2533.579674 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.95225 -35.77851 -35.16752 -32.31154 -29.99071 -28.18980 -27.52663 -25.46381 -24.94703 -24.36229 -22.13583 -20.12853 -19.81648 -17.69529 -16.76683 -15.70522 -15.40766 -14.81626 -14.54628 -14.04292 -13.71868 -13.50796 -13.37935 -12.78465 -12.44608 -12.32586 -12.14557 -12.09165 -11.78511 -11.62624 -11.31855 -11.27624 -10.95898 -10.82904 -10.60112 -10.56079 -10.48973 -10.07575 -9.89541 -9.68269 -9.44395 -9.42459 -8.95932 -8.59105 -7.39988 -6.08657 -4.08029 3.27817 3.37176 3.39753 4.39812 4.67248 4.81355 4.89199 5.03968 5.10606 5.15002 5.21379 5.26767 5.30645 5.58360 5.65749 5.70240 5.81020 5.81830 5.89455 5.93588 6.02639 6.11065 6.13514 6.20097 6.21782 6.23322 6.31632 6.39230 6.41255 6.45258 6.51219 6.58286 6.74445 6.77624 6.87016 6.94396 7.43014 7.61965 8.00592 8.40971 8.65873 8.96301 9.54214 11.04423 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.028827 B = 0.006402 C = 0.005698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.084459 B = 4372.707355 C = 4912.517200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.098 4.098 3 C -0.146 4.146 4 C -0.086 4.086 5 C -0.080 4.080 6 C 0.073 3.927 7 N -0.677 5.677 8 C 0.182 3.818 9 H -0.002 1.002 10 C -0.136 4.136 11 C -0.518 4.518 12 H 0.077 0.923 13 C 0.071 3.929 14 N -0.899 5.899 15 Si 0.891 3.109 16 H -0.278 1.278 17 H -0.269 1.269 18 H -0.298 1.298 19 C -0.134 4.134 20 C -0.142 4.142 21 C -0.133 4.133 22 H 0.051 0.949 23 H 0.046 0.954 24 H 0.070 0.930 25 H 0.073 0.927 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.017 0.983 32 H 0.065 0.935 33 H 0.337 0.663 34 H 0.035 0.965 35 H 0.057 0.943 36 H 0.024 0.976 37 H 0.264 0.736 38 H 0.090 0.910 39 H 0.056 0.944 40 H 0.068 0.932 41 H 0.061 0.939 42 H 0.069 0.931 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.777 17.220 5.406 18.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.117 4.117 3 C -0.204 4.204 4 C -0.124 4.124 5 C -0.080 4.080 6 C -0.057 4.057 7 N -0.310 5.310 8 C 0.073 3.927 9 H 0.016 0.984 10 C -0.193 4.193 11 C -0.556 4.556 12 H 0.095 0.905 13 C -0.131 4.131 14 N -0.538 5.538 15 Si 0.722 3.278 16 H -0.205 1.205 17 H -0.194 1.194 18 H -0.226 1.226 19 C -0.172 4.172 20 C -0.180 4.180 21 C -0.170 4.170 22 H 0.070 0.930 23 H 0.065 0.935 24 H 0.089 0.911 25 H 0.092 0.908 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.035 0.965 32 H 0.084 0.916 33 H 0.158 0.842 34 H 0.053 0.947 35 H 0.076 0.924 36 H 0.044 0.956 37 H 0.074 0.926 38 H 0.109 0.891 39 H 0.075 0.925 40 H 0.087 0.913 41 H 0.080 0.920 42 H 0.087 0.913 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -4.367 17.103 5.130 18.382 hybrid contribution 1.145 0.191 -0.947 1.498 sum -3.222 17.294 4.183 18.082 Atomic orbital electron populations 1.22097 0.95422 1.02428 1.00896 1.21133 0.96038 0.95492 0.99000 1.21856 1.00756 0.96466 1.01301 1.21383 1.00245 0.93404 0.97388 1.21828 0.97383 0.93952 0.94849 1.21786 0.97118 0.90657 0.96150 1.60573 1.63653 1.00598 1.06172 1.19502 0.91426 0.94611 0.87198 0.98404 1.22056 1.01060 0.97872 0.98362 1.21116 1.45325 0.91615 0.97560 0.90458 1.24932 0.94669 0.94672 0.98841 1.69896 1.46539 1.04237 1.33093 0.86797 0.77044 0.78940 0.85025 1.20547 1.19423 1.22598 1.23008 0.96597 1.01078 0.96481 1.22762 0.97569 1.00542 0.97103 1.23254 0.95646 1.02936 0.95159 0.92976 0.93507 0.91104 0.90831 0.92958 0.93002 0.93030 0.92025 0.92227 0.96501 0.91633 0.84186 0.94666 0.92417 0.95649 0.92629 0.89125 0.92525 0.91296 0.92009 0.91272 0.88455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 7.60 37.16 0.28 -1.34 16 2 C -0.10 -1.10 2.62 -90.62 -0.24 -1.33 16 3 C -0.15 -1.40 9.17 37.16 0.34 -1.06 16 4 C -0.09 -1.01 4.22 -26.73 -0.11 -1.12 16 5 C -0.08 -1.09 0.82 -153.69 -0.13 -1.22 16 6 C 0.07 1.23 4.40 -3.82 -0.02 1.22 16 7 N -0.68 -13.67 5.36 -107.94 -0.58 -14.25 16 8 C 0.18 4.35 2.19 -68.87 -0.15 4.20 16 9 H 0.00 -0.04 6.86 -51.93 -0.36 -0.40 16 10 C -0.14 -3.08 8.89 37.16 0.33 -2.75 16 11 C -0.52 -14.58 9.17 -34.44 -0.32 -14.90 16 12 H 0.08 2.34 7.86 -52.49 -0.41 1.93 16 13 C 0.07 2.06 5.45 -17.82 -0.10 1.96 16 14 N -0.90 -27.60 13.96 55.43 0.77 -26.83 16 15 Si 0.89 22.37 24.37 -169.99 -4.14 18.22 16 16 H -0.28 -6.83 6.87 56.52 0.39 -6.44 16 17 H -0.27 -6.54 6.53 56.52 0.37 -6.17 16 18 H -0.30 -7.46 7.11 56.52 0.40 -7.06 16 19 C -0.13 -1.84 7.03 -25.92 -0.18 -2.02 16 20 C -0.14 -1.76 7.73 -25.92 -0.20 -1.96 16 21 C -0.13 -1.78 6.02 -25.92 -0.16 -1.94 16 22 H 0.05 0.52 7.68 -51.93 -0.40 0.12 16 23 H 0.05 0.46 8.11 -51.93 -0.42 0.04 16 24 H 0.07 0.84 5.86 -51.93 -0.30 0.54 16 25 H 0.07 0.93 6.40 -51.93 -0.33 0.59 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.67 7.28 -51.93 -0.38 0.29 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.02 0.30 8.06 -51.93 -0.42 -0.12 16 32 H 0.07 1.12 6.16 -51.93 -0.32 0.80 16 33 H 0.34 6.89 5.78 -39.29 -0.23 6.66 16 34 H 0.03 0.82 3.27 -51.93 -0.17 0.65 16 35 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 36 H 0.02 0.50 7.45 -51.93 -0.39 0.11 16 37 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 38 H 0.09 1.40 5.78 -51.93 -0.30 1.10 16 39 H 0.06 0.72 8.10 -51.93 -0.42 0.30 16 40 H 0.07 0.76 7.62 -51.93 -0.40 0.37 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.07 0.84 4.80 -51.93 -0.25 0.59 16 43 H 0.10 1.53 7.49 -51.93 -0.39 1.15 16 LS Contribution 311.24 15.07 4.69 4.69 Total: -1.00 -28.96 311.24 -7.50 -36.45 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -7.60 Total: 3.98 kcal Atomic # 6 Polarization: -21.63 SS G_CDS: -0.64 Total: -22.27 kcal Atomic # 7 Polarization: -41.27 SS G_CDS: 0.19 Total: -41.08 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -4.14 Total: 18.22 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -28.96 -7.50 -36.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309075607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.276 kcal (2) G-P(sol) polarization free energy of solvation -28.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds