Wall clock time and date at job start Mon Mar 30 2020 05:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47284 * 2 1 4 4 C 1.53003 * 109.47485 * 120.00097 * 2 1 3 5 5 C 1.50699 * 109.47232 * 185.00279 * 4 2 1 6 6 H 1.07998 * 120.00206 * 0.02562 * 5 4 2 7 7 C 1.37872 * 119.99766 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00454 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99894 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47180 * 59.99714 * 9 7 5 11 11 H 1.48498 * 109.47039 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.46784 * 299.99757 * 9 7 5 13 13 O 1.42898 * 109.47290 * 240.00597 * 2 1 3 14 14 C 1.35919 * 117.00562 * 84.91907 * 13 2 1 15 15 C 1.38715 * 120.04631 * 174.28253 * 14 13 2 16 16 C 1.38149 * 119.95875 * 179.78962 * 15 14 13 17 17 C 1.38365 * 120.04190 * 0.46530 * 16 15 14 18 18 Cl 1.73598 * 119.95717 * 179.76905 * 17 16 15 19 19 C 1.38367 * 120.08310 * 359.78822 * 17 16 15 20 20 C 1.38144 * 120.04489 * 359.97438 * 19 17 16 21 21 H 1.08999 * 109.47164 * 299.99609 * 1 2 3 22 22 H 1.08995 * 109.47033 * 60.00149 * 1 2 3 23 23 H 1.08998 * 109.46562 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46897 * 305.00357 * 4 2 1 25 25 H 1.09002 * 109.46600 * 65.00317 * 4 2 1 26 26 H 0.97000 * 120.00630 * 179.97438 * 8 7 5 27 27 H 1.08003 * 120.02078 * 0.03001 * 15 14 13 28 28 H 1.08003 * 119.97763 * 180.23574 * 16 15 14 29 29 H 1.07993 * 119.97765 * 179.97438 * 19 17 16 30 30 H 1.07999 * 120.02585 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5420 -0.6148 1.3127 6 1 4.0790 -0.0853 0.5396 7 6 4.2305 -1.1935 2.3577 8 7 3.5766 -1.8378 3.2994 9 14 6.0922 -1.0609 2.4368 10 1 6.4844 0.3700 2.4972 11 1 6.5872 -1.7611 3.6492 12 1 6.6847 -1.6860 1.2270 13 8 2.0064 -0.6735 -1.1668 14 6 2.1110 0.0624 -2.3047 15 6 2.6770 -0.4942 -3.4423 16 6 2.7785 0.2540 -4.5992 17 6 2.3248 1.5610 -4.6209 18 17 2.4589 2.5011 -6.0741 19 6 1.7647 2.1197 -3.4856 20 6 1.6570 1.3731 -2.3283 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3632 -1.0277 -0.0005 24 1 1.6055 -0.2618 2.1370 25 1 1.7518 -1.7716 1.2055 26 1 4.0610 -2.2452 4.0344 27 1 3.0345 -1.5132 -3.4247 28 1 3.2156 -0.1803 -5.4862 29 1 1.4116 3.1401 -3.5044 30 1 1.2202 1.8096 -1.4423 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695789821.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:58 Heat of formation + Delta-G solvation = -35.870319 kcal Electronic energy + Delta-G solvation = -14578.455603 eV Core-core repulsion = 11978.429116 eV Total energy + Delta-G solvation = -2600.026487 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.066 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.91082 -37.57319 -36.09892 -33.51206 -31.79372 -30.83793 -29.14696 -27.51648 -23.57607 -22.97859 -22.09621 -20.02891 -18.01019 -16.42514 -16.26496 -15.67982 -14.73220 -14.61345 -14.38170 -13.54359 -13.37942 -13.14466 -12.68582 -12.17035 -11.98534 -11.83078 -11.69187 -11.40710 -11.15484 -10.88502 -10.73961 -10.65383 -10.38843 -10.03293 -9.44530 -9.16881 -8.97856 -8.42310 -7.78953 -6.05433 -4.07421 1.37174 1.43895 2.26305 3.32200 3.36286 3.39726 3.74435 3.85984 4.42987 4.89110 4.94489 5.29023 5.31796 5.47706 5.56012 5.63419 5.68765 5.88402 6.02101 6.06547 6.22105 6.35463 6.43609 6.56261 6.67662 6.78004 7.42646 7.52254 7.90426 8.02266 8.30759 8.95861 9.56365 11.05850 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.030889 B = 0.005620 C = 0.005049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.248289 B = 4980.963620 C = 5543.774964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.084 3.916 3 H 0.064 0.936 4 C 0.026 3.974 5 C -0.517 4.517 6 H 0.055 0.945 7 C 0.059 3.941 8 N -0.896 5.896 9 Si 0.893 3.107 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.276 1.276 13 O -0.286 6.286 14 C 0.159 3.841 15 C -0.152 4.152 16 C -0.071 4.071 17 C -0.089 4.089 18 Cl -0.088 7.088 19 C -0.069 4.069 20 C -0.206 4.206 21 H 0.069 0.931 22 H 0.048 0.952 23 H 0.063 0.937 24 H 0.039 0.961 25 H 0.030 0.970 26 H 0.262 0.738 27 H 0.138 0.862 28 H 0.133 0.867 29 H 0.129 0.871 30 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.543 6.203 -13.411 15.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.029 3.971 3 H 0.082 0.918 4 C -0.011 4.011 5 C -0.555 4.555 6 H 0.073 0.927 7 C -0.142 4.142 8 N -0.535 5.535 9 Si 0.721 3.279 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.201 1.201 13 O -0.198 6.198 14 C 0.111 3.889 15 C -0.171 4.171 16 C -0.090 4.090 17 C -0.116 4.116 18 Cl -0.059 7.059 19 C -0.088 4.088 20 C -0.225 4.225 21 H 0.088 0.912 22 H 0.068 0.932 23 H 0.082 0.918 24 H 0.057 0.943 25 H 0.048 0.952 26 H 0.072 0.928 27 H 0.156 0.844 28 H 0.151 0.849 29 H 0.147 0.853 30 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -4.468 5.973 -13.304 15.252 hybrid contribution 0.971 0.335 0.076 1.030 sum -3.497 6.308 -13.228 15.066 Atomic orbital electron populations 1.22423 0.96821 1.02759 1.01565 1.22946 0.91947 0.97199 0.85002 0.91799 1.19273 0.96624 0.96537 0.88672 1.21070 0.91636 1.34731 1.08068 0.92662 1.24968 0.98500 0.95157 0.95604 1.69933 1.35726 1.35785 1.12093 0.86639 0.85606 0.78258 0.77439 1.20243 1.21233 1.20146 1.86311 1.79378 1.38006 1.16136 1.19323 0.91619 0.90120 0.87885 1.20432 1.04124 1.01643 0.90852 1.20769 0.98208 0.91921 0.98063 1.20638 1.08908 0.93499 0.88515 1.98328 1.97214 1.73091 1.37298 1.20770 0.97335 0.99761 0.90924 1.21361 1.07092 0.94602 0.99430 0.91225 0.93247 0.91802 0.94261 0.95216 0.92826 0.84368 0.84865 0.85264 0.84302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.88 9.17 37.16 0.34 -2.54 16 2 C 0.08 1.68 2.17 -26.73 -0.06 1.62 16 3 H 0.06 1.23 6.31 -51.93 -0.33 0.91 16 4 C 0.03 0.64 4.68 -27.88 -0.13 0.51 16 5 C -0.52 -14.35 8.88 -34.44 -0.31 -14.66 16 6 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 7 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 8 N -0.90 -26.38 13.29 55.43 0.74 -25.64 16 9 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 O -0.29 -5.85 9.55 -19.49 -0.19 -6.04 16 14 C 0.16 2.75 6.60 -39.22 -0.26 2.49 16 15 C -0.15 -2.33 9.99 -39.44 -0.39 -2.72 16 16 C -0.07 -0.95 9.82 -39.57 -0.39 -1.34 16 17 C -0.09 -1.20 6.32 -39.49 -0.25 -1.45 16 18 Cl -0.09 -1.05 28.95 -51.86 -1.50 -2.55 16 19 C -0.07 -0.93 9.82 -39.57 -0.39 -1.32 16 20 C -0.21 -3.14 8.24 -39.44 -0.33 -3.47 16 21 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 22 H 0.05 0.70 6.91 -51.93 -0.36 0.34 16 23 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 24 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 27 H 0.14 1.98 8.06 -52.48 -0.42 1.56 16 28 H 0.13 1.46 8.06 -52.48 -0.42 1.03 16 29 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 30 H 0.14 2.00 5.43 -52.49 -0.28 1.71 16 LS Contribution 275.24 15.07 4.15 4.15 Total: -1.00 -29.22 275.24 -7.55 -36.77 By element: Atomic # 1 Polarization: 1.48 SS G_CDS: -3.47 Total: -1.99 kcal Atomic # 6 Polarization: -19.04 SS G_CDS: -2.26 Total: -21.30 kcal Atomic # 7 Polarization: -26.38 SS G_CDS: 0.74 Total: -25.64 kcal Atomic # 8 Polarization: -5.85 SS G_CDS: -0.19 Total: -6.04 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 17 Polarization: -1.05 SS G_CDS: -1.50 Total: -2.55 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -29.22 -7.55 -36.77 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695789821.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.900 kcal (2) G-P(sol) polarization free energy of solvation -29.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds