Wall clock time and date at job start Mon Mar 30 2020 05:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30783 * 1 3 3 Si 1.86804 * 120.00113 * 2 1 4 4 H 1.48496 * 109.46880 * 240.00344 * 3 2 1 5 5 H 1.48499 * 109.46975 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47218 * 119.99808 * 3 2 1 7 7 C 1.40031 * 120.00009 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00134 * 163.69560 * 7 2 1 9 9 C 1.41106 * 120.00311 * 343.69932 * 7 2 1 10 10 C 1.40909 * 121.03410 * 335.30234 * 9 7 2 11 11 C 1.38609 * 118.88958 * 180.02562 * 10 9 7 12 12 C 1.48336 * 119.47852 * 179.97438 * 11 10 9 13 13 C 1.39361 * 120.12801 * 359.72321 * 12 11 10 14 14 C 1.38006 * 119.87795 * 179.76410 * 13 12 11 15 15 C 1.38325 * 120.12246 * 0.48994 * 14 13 12 16 16 C 1.38317 * 120.25113 * 359.78733 * 15 14 13 17 17 C 1.38021 * 120.12183 * 359.95537 * 16 15 14 18 18 N 1.32980 * 121.04011 * 0.25098 * 11 10 9 19 19 C 1.31581 * 122.34139 * 359.47351 * 18 11 10 20 20 C 1.39029 * 120.97514 * 0.52805 * 19 18 11 21 21 N 1.38615 * 120.58598 * 179.76485 * 20 19 18 22 22 H 0.96998 * 119.99833 * 0.02562 * 1 2 3 23 23 H 1.08002 * 120.55899 * 0.02562 * 10 9 7 24 24 H 1.08014 * 120.05824 * 0.02562 * 13 12 11 25 25 H 1.08005 * 119.93890 * 180.24942 * 14 13 12 26 26 H 1.08008 * 119.87316 * 179.76063 * 15 14 13 27 27 H 1.07995 * 119.94374 * 179.97438 * 16 15 14 28 28 H 1.08001 * 120.05821 * 180.02562 * 17 16 15 29 29 H 1.07998 * 119.51501 * 180.25006 * 19 18 11 30 30 H 0.96991 * 120.00060 * 179.97438 * 21 20 19 31 31 H 0.97007 * 119.99559 * 359.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2419 1.6178 0.0000 4 1 3.0955 1.6964 -1.2125 5 1 1.2769 2.7465 0.0006 6 1 3.0956 1.6964 1.2125 7 6 2.0080 -1.2127 0.0005 8 1 3.0554 -1.2317 -0.2620 9 6 1.3451 -2.4100 0.3441 10 6 0.1955 -2.3959 1.1588 11 6 -0.4202 -3.5984 1.4690 12 6 -1.6309 -3.5988 2.3262 13 6 -2.1395 -2.3985 2.8189 14 6 -3.2689 -2.4044 3.6119 15 6 -3.8902 -3.5997 3.9262 16 6 -3.3865 -4.7945 3.4447 17 6 -2.2606 -4.8000 2.6465 18 7 0.0605 -4.7521 1.0149 19 6 1.1272 -4.8168 0.2472 20 6 1.8156 -3.6660 -0.1197 21 7 2.9413 -3.7440 -0.9248 22 1 -0.4850 0.8400 -0.0004 23 1 -0.1993 -1.4638 1.5353 24 1 -1.6530 -1.4649 2.5771 25 1 -3.6663 -1.4744 3.9910 26 1 -4.7717 -3.5999 4.5503 27 1 -3.8753 -5.7248 3.6936 28 1 -1.8684 -5.7336 2.2707 29 1 1.4758 -5.7785 -0.0992 30 1 3.4148 -2.9356 -1.1760 31 1 3.2554 -4.6071 -1.2370 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000321737146.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:10 Heat of formation + Delta-G solvation = 44.113384 kcal Electronic energy + Delta-G solvation = -16006.180067 eV Core-core repulsion = 13444.347534 eV Total energy + Delta-G solvation = -2561.832533 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 240.096 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.98454 -37.79621 -34.30718 -33.67862 -31.04209 -30.38938 -29.90328 -26.94457 -25.80955 -22.49254 -22.32856 -21.01518 -19.99100 -17.55743 -16.30291 -16.16034 -15.57938 -15.10956 -14.58612 -14.20084 -13.64085 -13.11725 -12.94517 -12.90731 -12.55392 -12.49601 -12.00024 -11.45059 -11.33011 -11.05999 -10.70461 -10.41558 -10.37503 -10.15004 -9.95182 -9.31970 -8.40707 -8.33381 -8.04445 -7.75941 -6.83485 -6.31146 -4.39723 1.69185 2.02856 2.78719 3.01435 3.02654 3.04525 3.26669 3.86934 4.40129 4.78012 5.04918 5.40364 5.46036 5.51123 5.70093 5.72000 6.04646 6.14967 6.17306 6.53486 6.57920 6.65499 6.76972 6.97984 7.06512 7.09600 7.12166 7.34683 7.50647 7.58945 7.70433 8.01012 8.24049 8.58537 8.66113 8.84002 8.92859 9.60966 10.13938 Molecular weight = 240.10amu Principal moments of inertia in cm(-1) A = 0.022171 B = 0.008260 C = 0.006119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.593037 B = 3389.075621 C = 4575.040825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.078 3.922 3 Si 0.908 3.092 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.460 4.460 8 H 0.076 0.924 9 C 0.080 3.920 10 C -0.165 4.165 11 C 0.093 3.907 12 C 0.001 3.999 13 C -0.112 4.112 14 C -0.126 4.126 15 C -0.141 4.141 16 C -0.131 4.131 17 C -0.102 4.102 18 N -0.522 5.522 19 C 0.018 3.982 20 C 0.078 3.922 21 N -0.875 5.875 22 H 0.282 0.718 23 H 0.133 0.867 24 H 0.129 0.871 25 H 0.115 0.885 26 H 0.111 0.889 27 H 0.113 0.887 28 H 0.128 0.872 29 H 0.120 0.880 30 H 0.392 0.608 31 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.674 -1.840 2.951 3.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.191 1.191 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.493 4.493 8 H 0.094 0.906 9 C 0.069 3.931 10 C -0.189 4.189 11 C -0.042 4.042 12 C 0.000 4.000 13 C -0.131 4.131 14 C -0.144 4.144 15 C -0.159 4.159 16 C -0.149 4.149 17 C -0.121 4.121 18 N -0.234 5.234 19 C -0.142 4.142 20 C -0.027 4.027 21 N -0.416 5.416 22 H 0.093 0.907 23 H 0.150 0.850 24 H 0.147 0.853 25 H 0.133 0.867 26 H 0.129 0.871 27 H 0.131 0.869 28 H 0.146 0.854 29 H 0.137 0.863 30 H 0.221 0.779 31 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -2.346 -2.478 3.193 4.673 hybrid contribution 1.111 1.576 -0.611 2.023 sum -1.235 -0.902 2.582 3.001 Atomic orbital electron populations 1.69764 1.07458 1.29370 1.35291 1.25826 0.94746 1.01093 0.92364 0.86364 0.80112 0.80364 0.79863 1.19128 1.20275 1.18888 1.19096 0.97124 0.90777 1.42253 0.90644 1.17427 0.93156 0.90614 0.91911 1.21973 0.98933 0.97224 1.00776 1.19038 0.95464 0.89698 0.99966 1.18788 0.93585 0.92759 0.94893 1.21374 0.96165 0.98291 0.97300 1.20960 0.96385 0.97586 0.99430 1.20998 1.00337 0.92921 1.01676 1.21008 0.97146 0.97512 0.99223 1.21287 0.94933 0.98506 0.97395 1.66987 1.13788 1.28411 1.14232 1.21368 0.95446 0.95095 1.02268 1.19074 0.91659 0.95225 0.96744 1.41746 1.31446 1.09547 1.58859 0.90698 0.84953 0.85342 0.86732 0.87113 0.86898 0.85392 0.86267 0.77901 0.79369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.73 10.94 55.55 0.61 -19.12 16 2 C 0.08 1.88 5.20 -17.33 -0.09 1.79 16 3 Si 0.91 17.97 29.59 -169.99 -5.03 12.94 16 4 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 5 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 6 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 7 C -0.46 -11.50 8.59 -37.82 -0.32 -11.83 16 8 H 0.08 1.77 6.77 -52.49 -0.36 1.41 16 9 C 0.08 2.05 5.61 -106.39 -0.60 1.45 16 10 C -0.17 -4.25 8.11 -38.43 -0.31 -4.56 16 11 C 0.09 2.30 6.72 -83.08 -0.56 1.74 16 12 C 0.00 0.01 5.88 -104.91 -0.62 -0.60 16 13 C -0.11 -2.23 9.41 -39.25 -0.37 -2.60 16 14 C -0.13 -2.09 10.03 -39.63 -0.40 -2.49 16 15 C -0.14 -2.18 10.04 -39.52 -0.40 -2.58 16 16 C -0.13 -2.13 10.03 -39.63 -0.40 -2.53 16 17 C -0.10 -1.99 9.57 -39.24 -0.38 -2.36 16 18 N -0.52 -12.65 9.37 -9.74 -0.09 -12.74 16 19 C 0.02 0.41 11.04 -17.37 -0.19 0.22 16 20 C 0.08 1.83 6.82 -83.10 -0.57 1.26 16 21 N -0.88 -16.53 8.99 32.83 0.30 -16.23 16 22 H 0.28 6.44 8.29 -40.82 -0.34 6.10 16 23 H 0.13 3.42 4.33 -52.49 -0.23 3.20 16 24 H 0.13 2.61 6.16 -52.48 -0.32 2.29 16 25 H 0.11 1.60 8.06 -52.48 -0.42 1.17 16 26 H 0.11 1.37 8.06 -52.48 -0.42 0.95 16 27 H 0.11 1.51 8.06 -52.49 -0.42 1.08 16 28 H 0.13 2.48 7.52 -52.49 -0.39 2.09 16 29 H 0.12 2.36 8.06 -52.49 -0.42 1.94 16 30 H 0.39 7.21 7.17 -40.82 -0.29 6.92 16 31 H 0.38 5.91 8.84 -40.82 -0.36 5.55 16 LS Contribution 268.58 15.07 4.05 4.05 Total: -1.00 -27.99 268.58 -8.14 -36.13 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: -2.78 Total: 18.07 kcal Atomic # 6 Polarization: -17.91 SS G_CDS: -5.19 Total: -23.10 kcal Atomic # 7 Polarization: -48.91 SS G_CDS: 0.81 Total: -48.10 kcal Atomic # 14 Polarization: 17.97 SS G_CDS: -5.03 Total: 12.94 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -27.99 -8.14 -36.13 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000321737146.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.247 kcal (2) G-P(sol) polarization free energy of solvation -27.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds