Wall clock time and date at job start Mon Mar 30 2020 05:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30783 * 1 3 3 Si 1.86804 * 120.00113 * 2 1 4 4 H 1.48496 * 109.46880 * 240.00344 * 3 2 1 5 5 H 1.48499 * 109.46975 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47218 * 119.99808 * 3 2 1 7 7 C 1.40031 * 120.00009 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00134 * 163.69560 * 7 2 1 9 9 C 1.41106 * 120.00311 * 343.69932 * 7 2 1 10 10 C 1.40909 * 121.03410 * 335.30234 * 9 7 2 11 11 C 1.38609 * 118.88958 * 180.02562 * 10 9 7 12 12 C 1.48336 * 119.47852 * 179.97438 * 11 10 9 13 13 C 1.39361 * 120.12801 * 359.72321 * 12 11 10 14 14 C 1.38006 * 119.87795 * 179.76410 * 13 12 11 15 15 C 1.38325 * 120.12246 * 0.48994 * 14 13 12 16 16 C 1.38317 * 120.25113 * 359.78733 * 15 14 13 17 17 C 1.38021 * 120.12183 * 359.95537 * 16 15 14 18 18 N 1.32980 * 121.04011 * 0.25098 * 11 10 9 19 19 C 1.31581 * 122.34139 * 359.47351 * 18 11 10 20 20 C 1.39029 * 120.97514 * 0.52805 * 19 18 11 21 21 N 1.38615 * 120.58598 * 179.76485 * 20 19 18 22 22 H 0.96998 * 119.99833 * 0.02562 * 1 2 3 23 23 H 1.08002 * 120.55899 * 0.02562 * 10 9 7 24 24 H 1.08014 * 120.05824 * 0.02562 * 13 12 11 25 25 H 1.08005 * 119.93890 * 180.24942 * 14 13 12 26 26 H 1.08008 * 119.87316 * 179.76063 * 15 14 13 27 27 H 1.07995 * 119.94374 * 179.97438 * 16 15 14 28 28 H 1.08001 * 120.05821 * 180.02562 * 17 16 15 29 29 H 1.07998 * 119.51501 * 180.25006 * 19 18 11 30 30 H 0.96991 * 120.00060 * 179.97438 * 21 20 19 31 31 H 0.97007 * 119.99559 * 359.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2419 1.6178 0.0000 4 1 3.0955 1.6964 -1.2125 5 1 1.2769 2.7465 0.0006 6 1 3.0956 1.6964 1.2125 7 6 2.0080 -1.2127 0.0005 8 1 3.0554 -1.2317 -0.2620 9 6 1.3451 -2.4100 0.3441 10 6 0.1955 -2.3959 1.1588 11 6 -0.4202 -3.5984 1.4690 12 6 -1.6309 -3.5988 2.3262 13 6 -2.1395 -2.3985 2.8189 14 6 -3.2689 -2.4044 3.6119 15 6 -3.8902 -3.5997 3.9262 16 6 -3.3865 -4.7945 3.4447 17 6 -2.2606 -4.8000 2.6465 18 7 0.0605 -4.7521 1.0149 19 6 1.1272 -4.8168 0.2472 20 6 1.8156 -3.6660 -0.1197 21 7 2.9413 -3.7440 -0.9248 22 1 -0.4850 0.8400 -0.0004 23 1 -0.1993 -1.4638 1.5353 24 1 -1.6530 -1.4649 2.5771 25 1 -3.6663 -1.4744 3.9910 26 1 -4.7717 -3.5999 4.5503 27 1 -3.8753 -5.7248 3.6936 28 1 -1.8684 -5.7336 2.2707 29 1 1.4758 -5.7785 -0.0992 30 1 3.4148 -2.9356 -1.1760 31 1 3.2554 -4.6071 -1.2370 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000321737146.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:10 Heat of formation + Delta-G solvation = 27.619842 kcal Electronic energy + Delta-G solvation = -16006.895280 eV Core-core repulsion = 13444.347534 eV Total energy + Delta-G solvation = -2562.547747 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 240.096 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.64370 -39.34086 -36.07615 -35.41009 -32.64830 -31.90349 -31.53463 -28.60885 -27.63517 -24.14145 -23.90740 -22.59586 -21.64478 -19.29208 -18.01436 -17.73620 -17.22880 -16.70339 -16.18258 -15.72206 -15.15857 -14.75176 -14.67040 -14.49908 -14.19795 -13.99523 -13.52428 -13.16933 -13.01407 -12.70659 -12.23737 -12.00552 -11.84361 -11.78883 -11.65089 -11.09763 -10.02839 -9.88601 -9.72479 -9.51703 -8.63722 -8.02512 -6.26965 0.16421 0.63119 1.00692 1.33237 1.39979 1.50526 1.60941 2.20539 2.77255 3.12951 3.45806 3.83668 3.85338 4.13700 4.25432 4.34976 4.44108 4.66553 4.75601 4.86262 4.96617 5.12536 5.23369 5.25457 5.41027 5.52747 5.62668 5.69717 5.85379 5.94896 6.17004 6.25316 6.44373 6.76468 6.85024 7.07050 7.39982 7.77699 8.35877 Molecular weight = 240.10amu Principal moments of inertia in cm(-1) A = 0.022171 B = 0.008260 C = 0.006119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.593037 B = 3389.075621 C = 4575.040825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.036 3.964 3 Si 0.982 3.018 4 H -0.257 1.257 5 H -0.272 1.272 6 H -0.263 1.263 7 C -0.485 4.485 8 H 0.084 0.916 9 C 0.046 3.954 10 C -0.193 4.193 11 C 0.081 3.919 12 C -0.039 4.039 13 C -0.130 4.130 14 C -0.123 4.123 15 C -0.125 4.125 16 C -0.124 4.124 17 C -0.114 4.114 18 N -0.531 5.531 19 C 0.004 3.996 20 C 0.073 3.927 21 N -0.859 5.859 22 H 0.287 0.713 23 H 0.121 0.879 24 H 0.109 0.891 25 H 0.145 0.855 26 H 0.156 0.844 27 H 0.150 0.850 28 H 0.120 0.880 29 H 0.150 0.850 30 H 0.396 0.604 31 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.484 -1.901 3.744 4.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.179 4.179 3 Si 0.803 3.197 4 H -0.181 1.181 5 H -0.196 1.196 6 H -0.188 1.188 7 C -0.517 4.517 8 H 0.102 0.898 9 C 0.035 3.965 10 C -0.217 4.217 11 C -0.055 4.055 12 C -0.039 4.039 13 C -0.149 4.149 14 C -0.141 4.141 15 C -0.143 4.143 16 C -0.141 4.141 17 C -0.133 4.133 18 N -0.244 5.244 19 C -0.155 4.155 20 C -0.033 4.033 21 N -0.402 5.402 22 H 0.098 0.902 23 H 0.138 0.862 24 H 0.127 0.873 25 H 0.162 0.838 26 H 0.174 0.826 27 H 0.168 0.832 28 H 0.138 0.862 29 H 0.168 0.832 30 H 0.225 0.775 31 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -3.128 -2.569 3.962 5.663 hybrid contribution 1.274 1.513 -0.816 2.140 sum -1.854 -1.055 3.146 3.801 Atomic orbital electron populations 1.69850 1.08985 1.30493 1.35710 1.26705 0.95453 1.04328 0.91451 0.85252 0.78686 0.75815 0.79956 1.18139 1.19645 1.18797 1.19400 0.97649 0.91425 1.43212 0.89761 1.17860 0.93849 0.92116 0.92652 1.21993 1.00070 0.97385 1.02237 1.19492 0.96441 0.89402 1.00139 1.18891 0.93897 0.94543 0.96609 1.21362 0.97751 0.96982 0.98821 1.21317 0.94918 0.99780 0.98049 1.21513 1.00742 0.91693 1.00370 1.21414 0.95635 0.99661 0.97424 1.21338 0.96259 0.97214 0.98525 1.67068 1.14373 1.28293 1.14700 1.21886 0.95236 0.96326 1.02083 1.19177 0.92631 0.94601 0.96927 1.41615 1.30020 1.10835 1.57693 0.90217 0.86166 0.87337 0.83765 0.82631 0.83212 0.86194 0.83238 0.77483 0.77237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.48 10.94 21.84 0.24 -42.24 16 2 C 0.04 1.77 5.20 85.28 0.44 2.21 16 3 Si 0.98 37.08 29.59 68.60 2.03 39.11 16 4 H -0.26 -9.26 7.11 99.48 0.71 -8.56 16 5 H -0.27 -9.89 7.11 99.48 0.71 -9.19 16 6 H -0.26 -9.83 7.11 99.48 0.71 -9.13 16 7 C -0.48 -24.86 8.59 23.41 0.20 -24.66 16 8 H 0.08 3.99 6.77 -2.91 -0.02 3.98 16 9 C 0.05 2.46 5.61 -21.01 -0.12 2.34 16 10 C -0.19 -10.50 8.11 23.01 0.19 -10.31 16 11 C 0.08 4.17 6.72 41.75 0.28 4.45 16 12 C -0.04 -1.73 5.88 -20.05 -0.12 -1.85 16 13 C -0.13 -5.29 9.41 22.49 0.21 -5.08 16 14 C -0.12 -3.85 10.03 22.24 0.22 -3.63 16 15 C -0.13 -3.39 10.04 22.31 0.22 -3.16 16 16 C -0.12 -3.67 10.03 22.24 0.22 -3.44 16 17 C -0.11 -4.41 9.57 22.49 0.22 -4.20 16 18 N -0.53 -26.51 9.37 -184.71 -1.73 -28.24 16 19 C 0.00 0.19 11.04 84.92 0.94 1.13 16 20 C 0.07 3.48 6.82 39.17 0.27 3.74 16 21 N -0.86 -32.07 8.99 -50.05 -0.45 -32.52 16 22 H 0.29 13.51 8.29 -92.71 -0.77 12.74 16 23 H 0.12 6.68 4.33 -2.91 -0.01 6.67 16 24 H 0.11 4.74 6.16 -2.90 -0.02 4.72 16 25 H 0.14 3.60 8.06 -2.91 -0.02 3.57 16 26 H 0.16 2.90 8.06 -2.91 -0.02 2.87 16 27 H 0.15 3.32 8.06 -2.91 -0.02 3.30 16 28 H 0.12 4.70 7.52 -2.91 -0.02 4.68 16 29 H 0.15 5.79 8.06 -2.91 -0.02 5.77 16 30 H 0.40 14.38 7.17 -92.71 -0.66 13.72 16 31 H 0.40 11.86 8.84 -92.70 -0.82 11.04 16 Total: -1.00 -63.12 268.58 2.97 -60.15 By element: Atomic # 1 Polarization: 46.48 SS G_CDS: -0.30 Total: 46.18 kcal Atomic # 6 Polarization: -45.63 SS G_CDS: 3.18 Total: -42.45 kcal Atomic # 7 Polarization: -101.05 SS G_CDS: -1.94 Total: -102.99 kcal Atomic # 14 Polarization: 37.08 SS G_CDS: 2.03 Total: 39.11 kcal Total: -63.12 2.97 -60.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000321737146.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.773 kcal (2) G-P(sol) polarization free energy of solvation -63.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds