Wall clock time and date at job start Mon Mar 30 2020 05:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86794 * 120.00164 * 2 1 4 4 H 1.48502 * 109.47606 * 240.00256 * 3 2 1 5 5 H 1.48510 * 109.47071 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47198 * 120.00082 * 3 2 1 7 7 C 1.37882 * 119.99866 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99793 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00008 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47017 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.47204 * 305.00367 * 10 9 7 12 12 N 1.46905 * 109.47034 * 65.00189 * 10 9 7 13 13 C 1.50698 * 109.47049 * 184.99831 * 10 9 7 14 14 C 1.38262 * 119.95595 * 264.99892 * 13 10 9 15 15 C 1.38129 * 120.07116 * 179.97438 * 14 13 10 16 16 C 1.38756 * 119.97137 * 0.02562 * 15 14 13 17 17 O 1.35900 * 120.05355 * 179.97438 * 16 15 14 18 18 C 1.38686 * 119.90241 * 359.97438 * 16 15 14 19 19 C 1.38285 * 119.93119 * 359.74486 * 18 16 15 20 20 Cl 1.73605 * 119.98919 * 180.25049 * 19 18 16 21 21 H 0.96995 * 119.99589 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.46976 * 60.00236 * 9 7 2 23 23 H 1.09003 * 109.47133 * 300.00443 * 9 7 2 24 24 H 1.00901 * 110.99869 * 60.00199 * 12 10 9 25 25 H 1.00896 * 110.99543 * 183.95322 * 12 10 9 26 26 H 1.08007 * 119.96264 * 359.95989 * 14 13 10 27 27 H 1.08001 * 120.01532 * 179.97438 * 15 14 13 28 28 H 0.96691 * 114.00545 * 89.99218 * 17 16 15 29 29 H 1.08000 * 120.03682 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 1 2.9295 -3.5552 -0.8423 12 7 3.0084 -3.6539 1.2548 13 6 1.4959 -4.9636 -0.1243 14 6 1.1639 -5.6798 1.0108 15 6 0.4765 -6.8728 0.9001 16 6 0.1193 -7.3534 -0.3515 17 8 -0.5565 -8.5273 -0.4624 18 6 0.4529 -6.6342 -1.4894 19 6 1.1360 -5.4374 -1.3736 20 17 1.5486 -4.5326 -2.7966 21 1 -0.4849 0.8400 0.0004 22 1 0.6241 -2.5567 -0.8903 23 1 0.6247 -2.5571 0.8897 24 1 2.3961 -3.7518 2.0508 25 1 3.7160 -4.3731 1.2523 26 1 1.4425 -5.3061 1.9851 27 1 0.2180 -7.4317 1.7874 28 1 -1.5184 -8.4307 -0.4432 29 1 0.1756 -7.0060 -2.4647 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261076451.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:29:44 Heat of formation + Delta-G solvation = -31.556525 kcal Electronic energy + Delta-G solvation = -14834.913275 eV Core-core repulsion = 12169.647937 eV Total energy + Delta-G solvation = -2665.265338 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 241.061 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.85066 -37.48508 -36.06168 -34.72326 -32.38996 -30.73983 -29.12437 -28.16902 -24.39149 -22.65244 -22.16450 -19.85352 -18.51684 -16.62887 -16.08908 -15.75887 -15.20260 -14.96062 -14.33927 -14.22292 -13.74363 -13.24443 -12.97017 -12.28184 -12.01676 -11.83887 -11.29215 -11.04318 -10.87604 -10.62951 -10.57279 -10.43821 -10.19061 -9.63478 -9.07936 -8.76467 -8.27572 -8.18714 -8.03440 -5.89462 -3.87844 1.22072 1.27405 2.40436 3.41629 3.44862 3.48556 3.57809 4.20569 4.55908 4.87214 5.03797 5.15547 5.25290 5.46282 5.52811 5.71635 5.81781 6.16379 6.22262 6.35124 6.48952 6.66696 6.85724 7.54749 7.56045 7.68838 7.95519 8.08882 8.13363 8.53560 9.17375 9.73645 11.22360 Molecular weight = 241.06amu Principal moments of inertia in cm(-1) A = 0.033495 B = 0.006613 C = 0.006185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.733178 B = 4232.957175 C = 4526.073591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.052 3.948 3 Si 0.892 3.108 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.492 4.492 8 H 0.062 0.938 9 C 0.040 3.960 10 C 0.128 3.872 11 H 0.089 0.911 12 N -0.820 5.820 13 C -0.094 4.094 14 C -0.101 4.101 15 C -0.137 4.137 16 C 0.096 3.904 17 O -0.498 6.498 18 C -0.136 4.136 19 C -0.016 4.016 20 Cl -0.054 7.054 21 H 0.258 0.742 22 H 0.026 0.974 23 H 0.014 0.986 24 H 0.334 0.666 25 H 0.323 0.677 26 H 0.132 0.868 27 H 0.129 0.871 28 H 0.389 0.611 29 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.223 -14.227 -0.458 14.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.148 4.148 3 Si 0.721 3.279 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.531 4.531 8 H 0.080 0.920 9 C 0.003 3.997 10 C 0.016 3.984 11 H 0.106 0.894 12 N -0.348 5.348 13 C -0.098 4.098 14 C -0.120 4.120 15 C -0.155 4.155 16 C 0.051 3.949 17 O -0.308 6.308 18 C -0.155 4.155 19 C -0.044 4.044 20 Cl -0.024 7.024 21 H 0.068 0.932 22 H 0.044 0.956 23 H 0.032 0.968 24 H 0.148 0.852 25 H 0.135 0.865 26 H 0.150 0.850 27 H 0.147 0.853 28 H 0.244 0.756 29 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.461 -13.500 -0.817 13.533 hybrid contribution -0.570 0.137 0.031 0.587 sum -0.109 -13.363 -0.787 13.386 Atomic orbital electron populations 1.69961 1.05985 1.26428 1.51929 1.25000 0.94791 0.99094 0.95928 0.86657 0.79473 0.83263 0.78543 1.20436 1.21638 1.20331 1.21085 0.93314 0.89950 1.48732 0.92011 1.19112 0.92738 0.90395 0.97469 1.20960 0.95147 0.89617 0.92652 0.89359 1.58814 1.17754 1.54305 1.03923 1.21419 0.98250 0.99016 0.91075 1.20839 0.98602 0.94151 0.98384 1.21408 1.00691 0.96437 0.97013 1.18151 0.98445 0.86540 0.91732 1.84814 1.23006 1.27143 1.95824 1.21239 1.01096 0.93778 0.99418 1.20607 1.01551 0.93561 0.88652 1.98386 1.92000 1.74112 1.37951 0.93221 0.95584 0.96763 0.85184 0.86545 0.84985 0.85259 0.75595 0.84780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.19 13.29 55.43 0.74 -26.45 15 2 C 0.05 1.48 5.46 -17.82 -0.10 1.39 15 3 Si 0.89 22.13 29.54 -169.99 -5.02 17.11 15 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 15 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 15 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 15 7 C -0.49 -13.81 8.84 -34.44 -0.30 -14.12 15 8 H 0.06 1.73 7.74 -52.48 -0.41 1.33 15 9 C 0.04 1.01 4.60 -27.89 -0.13 0.88 15 10 C 0.13 2.56 2.43 -68.86 -0.17 2.39 15 11 H 0.09 1.85 7.13 -51.93 -0.37 1.48 15 12 N -0.82 -14.70 8.54 -5.65 -0.05 -14.75 15 13 C -0.09 -1.63 5.05 -104.57 -0.53 -2.16 15 14 C -0.10 -1.49 9.26 -39.61 -0.37 -1.86 15 15 C -0.14 -1.81 9.99 -39.43 -0.39 -2.20 15 16 C 0.10 1.29 6.70 -39.22 -0.26 1.02 15 17 O -0.50 -5.63 13.50 -19.43 -0.26 -5.89 15 18 C -0.14 -1.97 9.77 -39.40 -0.38 -2.35 15 19 C -0.02 -0.27 6.31 -39.52 -0.25 -0.52 15 20 Cl -0.05 -0.92 27.16 -51.86 -1.41 -2.33 15 21 H 0.26 7.42 8.31 -40.82 -0.34 7.08 15 22 H 0.03 0.70 7.90 -51.93 -0.41 0.29 15 23 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 15 24 H 0.33 5.59 7.20 -39.29 -0.28 5.31 15 25 H 0.32 4.84 9.06 -39.29 -0.36 4.49 15 26 H 0.13 1.74 6.28 -52.48 -0.33 1.41 15 27 H 0.13 1.39 8.06 -52.49 -0.42 0.97 15 28 H 0.39 2.54 9.06 45.56 0.41 2.95 15 29 H 0.13 1.71 8.06 -52.49 -0.42 1.29 15 LS Contribution 268.72 15.07 4.05 4.05 Total: -1.00 -31.82 268.72 -6.98 -38.80 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -2.15 Total: 6.98 kcal Atomic # 6 Polarization: -14.64 SS G_CDS: -2.88 Total: -17.53 kcal Atomic # 7 Polarization: -41.89 SS G_CDS: 0.69 Total: -41.20 kcal Atomic # 8 Polarization: -5.63 SS G_CDS: -0.26 Total: -5.89 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Atomic # 17 Polarization: -0.92 SS G_CDS: -1.41 Total: -2.33 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -31.82 -6.98 -38.80 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261076451.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.248 kcal (2) G-P(sol) polarization free energy of solvation -31.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds