Wall clock time and date at job start Mon Mar 30 2020 05:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36135 * 120.17116 * 2 1 4 4 C 1.39335 * 120.98720 * 180.02562 * 3 2 1 5 5 C 1.36124 * 120.98872 * 0.02562 * 4 3 2 6 6 C 1.50702 * 120.16947 * 180.02562 * 5 4 3 7 7 H 1.09003 * 109.46632 * 219.97054 * 6 5 4 8 8 N 1.46901 * 109.47080 * 339.97088 * 6 5 4 9 9 C 1.50697 * 109.47285 * 99.97441 * 6 5 4 10 10 H 1.07996 * 120.00212 * 359.97438 * 9 6 5 11 11 C 1.37885 * 119.99854 * 179.97438 * 9 6 5 12 12 N 1.31518 * 119.99686 * 359.97438 * 11 9 6 13 13 Si 1.86796 * 120.00029 * 179.97438 * 11 9 6 14 14 H 1.48503 * 109.46894 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47404 * 119.99935 * 13 11 9 16 16 H 1.48501 * 109.46990 * 240.00171 * 13 11 9 17 17 C 1.40498 * 119.65842 * 359.97438 * 5 4 3 18 18 C 1.40547 * 121.29374 * 179.97438 * 17 5 4 19 19 C 1.36088 * 119.65209 * 180.02562 * 18 17 5 20 20 C 1.39385 * 120.99475 * 359.97438 * 19 18 17 21 21 C 1.36085 * 120.99331 * 0.02562 * 20 19 18 22 22 C 1.40498 * 120.17562 * 180.02562 * 2 1 3 23 23 H 1.08997 * 109.47081 * 269.99634 * 1 2 3 24 24 H 1.08996 * 109.47023 * 29.99300 * 1 2 3 25 25 H 1.08997 * 109.46562 * 149.99560 * 1 2 3 26 26 H 1.08000 * 119.50463 * 0.02562 * 3 2 1 27 27 H 1.07998 * 119.50302 * 180.02562 * 4 3 2 28 28 H 1.00895 * 111.00226 * 60.00224 * 8 6 5 29 29 H 1.00905 * 110.99933 * 183.96206 * 8 6 5 30 30 H 0.96995 * 119.99404 * 180.02562 * 12 11 9 31 31 H 1.07994 * 120.17337 * 0.02562 * 18 17 5 32 32 H 1.08001 * 119.50427 * 180.27171 * 19 18 17 33 33 H 1.07999 * 119.50306 * 179.97438 * 20 19 18 34 34 H 1.08001 * 120.17369 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1912 1.1769 0.0000 4 6 3.5844 1.1968 -0.0005 5 6 4.3018 0.0399 -0.0016 6 6 5.8082 0.0829 -0.0016 7 1 6.1938 -0.6934 -0.6625 8 7 6.2605 1.3980 -0.4747 9 6 6.3174 -0.1500 1.3975 10 1 5.6200 -0.3125 2.2059 11 6 7.6738 -0.1557 1.6455 12 7 8.5230 0.0417 0.6608 13 14 8.3050 -0.4437 3.3798 14 1 7.1550 -0.6373 4.2993 15 1 9.1643 -1.6546 3.3992 16 1 9.0973 0.7327 3.8199 17 6 3.6306 -1.1944 -0.0016 18 6 4.3370 -2.4095 -0.0032 19 6 3.6529 -3.5859 -0.0037 20 6 2.2591 -3.6057 -0.0021 21 6 1.5418 -2.4493 -0.0005 22 6 2.2132 -1.2146 -0.0005 23 1 -0.3633 -0.0001 1.0276 24 1 -0.3633 0.8900 -0.5137 25 1 -0.3632 -0.8899 -0.5139 26 1 1.6459 2.1092 0.0004 27 1 4.1028 2.1442 -0.0001 28 1 5.9159 2.1351 0.1218 29 1 7.2666 1.4305 -0.5454 30 1 9.4772 0.0373 0.8352 31 1 5.4169 -2.4095 -0.0041 32 1 4.1980 -4.5182 -0.0005 33 1 1.7407 -4.5532 -0.0030 34 1 0.4623 -2.4801 0.0003 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095683844.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:17 Heat of formation + Delta-G solvation = 30.530377 kcal Electronic energy + Delta-G solvation = -16765.199332 eV Core-core repulsion = 14240.892228 eV Total energy + Delta-G solvation = -2524.307104 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 241.116 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.95558 -36.25003 -35.20311 -32.69500 -30.81212 -29.72940 -29.39940 -26.77249 -25.47718 -22.79491 -22.39773 -21.88741 -19.02258 -16.82918 -16.56451 -16.42530 -15.53380 -14.62928 -14.26878 -13.71386 -13.64710 -13.38533 -12.96564 -12.84791 -12.57572 -12.23887 -11.99240 -11.66759 -11.41843 -11.26725 -10.99456 -10.96246 -10.52223 -10.44453 -10.16465 -9.97200 -9.46320 -9.05514 -8.64615 -7.98664 -7.30968 -7.00867 -6.12686 -4.30199 1.20007 1.64938 2.71489 3.18618 3.27837 3.33341 3.64481 4.29409 4.77997 5.07949 5.13121 5.27069 5.37886 5.45273 5.56624 5.73110 5.81937 5.85777 5.97594 6.04390 6.12048 6.16875 6.43631 6.49069 6.73690 6.78054 6.88772 6.91111 7.05383 7.22122 7.25860 7.45471 7.68052 7.71230 7.78889 8.04520 8.63102 8.89184 9.06965 9.41865 10.83903 Molecular weight = 241.12amu Principal moments of inertia in cm(-1) A = 0.024949 B = 0.008031 C = 0.006917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.032653 B = 3485.712250 C = 4046.757986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.118 4.118 3 C -0.102 4.102 4 C -0.131 4.131 5 C -0.011 4.011 6 C 0.239 3.761 7 H 0.052 0.948 8 N -0.851 5.851 9 C -0.540 4.540 10 H 0.056 0.944 11 C 0.067 3.933 12 N -0.893 5.893 13 Si 0.895 3.105 14 H -0.272 1.272 15 H -0.282 1.282 16 H -0.283 1.283 17 C -0.050 4.050 18 C -0.071 4.071 19 C -0.147 4.147 20 C -0.118 4.118 21 C -0.126 4.126 22 C -0.044 4.044 23 H 0.062 0.938 24 H 0.060 0.940 25 H 0.062 0.938 26 H 0.111 0.889 27 H 0.124 0.876 28 H 0.312 0.688 29 H 0.356 0.644 30 H 0.266 0.734 31 H 0.138 0.862 32 H 0.115 0.885 33 H 0.112 0.888 34 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.277 -2.272 -1.190 11.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.118 4.118 3 C -0.120 4.120 4 C -0.150 4.150 5 C -0.012 4.012 6 C 0.129 3.871 7 H 0.069 0.931 8 N -0.381 5.381 9 C -0.579 4.579 10 H 0.075 0.925 11 C -0.136 4.136 12 N -0.532 5.532 13 Si 0.723 3.277 14 H -0.197 1.197 15 H -0.208 1.208 16 H -0.209 1.209 17 C -0.050 4.050 18 C -0.088 4.088 19 C -0.165 4.165 20 C -0.136 4.136 21 C -0.144 4.144 22 C -0.044 4.044 23 H 0.081 0.919 24 H 0.079 0.921 25 H 0.080 0.920 26 H 0.129 0.871 27 H 0.141 0.859 28 H 0.122 0.878 29 H 0.173 0.827 30 H 0.076 0.924 31 H 0.156 0.844 32 H 0.133 0.867 33 H 0.130 0.870 34 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -11.481 -2.436 -1.912 11.891 hybrid contribution 0.990 -0.137 1.997 2.233 sum -10.490 -2.573 0.085 10.802 Atomic orbital electron populations 1.20677 0.91920 1.02002 1.01570 1.19464 0.95136 0.92574 1.04666 1.20688 0.94558 0.96805 0.99983 1.20618 0.92769 0.99001 1.02575 1.20386 0.98013 0.91129 0.91650 1.17992 0.84564 0.90140 0.94425 0.93072 1.59548 1.18843 1.04757 1.54953 1.21799 0.91755 1.49944 0.94426 0.92522 1.25011 0.96751 0.94455 0.97353 1.69752 1.02645 1.49771 1.31045 0.86473 0.78870 0.77924 0.84426 1.19697 1.20790 1.20914 1.18028 0.91900 0.94034 1.01042 1.21352 1.01002 0.91288 0.95196 1.20756 0.94117 0.98050 1.03550 1.20718 0.94311 0.97647 1.00945 1.20876 0.99051 0.91882 1.02584 1.17883 0.92593 0.93087 1.00852 0.91935 0.92087 0.91957 0.87101 0.85862 0.87790 0.82744 0.92449 0.84406 0.86730 0.87007 0.86390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.32 9.54 36.01 0.34 -0.98 16 2 C -0.12 -2.00 5.89 -104.53 -0.62 -2.61 16 3 C -0.10 -1.78 9.59 -39.93 -0.38 -2.16 16 4 C -0.13 -2.64 9.19 -39.93 -0.37 -3.01 16 5 C -0.01 -0.25 5.03 -104.53 -0.53 -0.77 16 6 C 0.24 5.88 2.30 -70.02 -0.16 5.72 16 7 H 0.05 1.38 6.99 -51.93 -0.36 1.01 16 8 N -0.85 -20.05 8.66 -6.65 -0.06 -20.10 16 9 C -0.54 -14.26 8.37 -34.44 -0.29 -14.55 16 10 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 11 C 0.07 1.76 5.38 -17.81 -0.10 1.67 16 12 N -0.89 -24.12 11.54 55.43 0.64 -23.48 16 13 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 16 14 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 15 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 16 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 17 C -0.05 -1.04 5.74 -106.83 -0.61 -1.66 16 18 C -0.07 -1.42 9.16 -39.48 -0.36 -1.78 16 19 C -0.15 -2.48 9.95 -39.93 -0.40 -2.88 16 20 C -0.12 -1.81 9.95 -39.93 -0.40 -2.21 16 21 C -0.13 -2.01 9.28 -39.49 -0.37 -2.37 16 22 C -0.04 -0.82 5.74 -106.83 -0.61 -1.43 16 23 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 24 H 0.06 0.67 8.08 -51.93 -0.42 0.25 16 25 H 0.06 0.71 6.43 -51.93 -0.33 0.38 16 26 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 27 H 0.12 2.38 6.17 -52.49 -0.32 2.06 16 28 H 0.31 6.98 7.28 -39.29 -0.29 6.69 16 29 H 0.36 8.95 7.08 -39.29 -0.28 8.67 16 30 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 31 H 0.14 2.95 6.44 -52.49 -0.34 2.61 16 32 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 33 H 0.11 1.36 8.06 -52.49 -0.42 0.93 16 34 H 0.12 1.53 6.37 -52.49 -0.33 1.20 16 LS Contribution 279.37 15.07 4.21 4.21 Total: -1.00 -27.69 279.37 -8.98 -36.67 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: -3.91 Total: 15.94 kcal Atomic # 6 Polarization: -24.18 SS G_CDS: -4.84 Total: -29.02 kcal Atomic # 7 Polarization: -44.16 SS G_CDS: 0.58 Total: -43.58 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -27.69 -8.98 -36.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095683844.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.201 kcal (2) G-P(sol) polarization free energy of solvation -27.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds