Wall clock time and date at job start Mon Mar 30 2020 06:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34637 * 116.99720 * 2 1 4 4 O 1.21518 * 120.00260 * 0.02562 * 3 2 1 5 5 N 1.34770 * 120.00154 * 179.97438 * 3 2 1 6 6 C 1.46926 * 120.62999 * 354.91687 * 5 3 2 7 7 C 1.53190 * 108.77624 * 233.62785 * 6 5 3 8 8 C 1.53040 * 109.34041 * 305.35093 * 7 6 5 9 9 C 1.53097 * 109.50576 * 61.34409 * 8 7 6 10 10 H 1.09003 * 109.49044 * 58.62094 * 9 8 7 11 11 C 1.50702 * 109.49287 * 178.70187 * 9 8 7 12 12 H 1.07991 * 120.00422 * 119.85528 * 11 9 8 13 13 C 1.37882 * 119.99740 * 299.86029 * 11 9 8 14 14 N 1.31512 * 120.00088 * 359.97438 * 13 11 9 15 15 Si 1.86801 * 119.99631 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47241 * 359.97438 * 15 13 11 17 17 H 1.48504 * 109.47037 * 120.00162 * 15 13 11 18 18 H 1.48496 * 109.47010 * 239.99505 * 15 13 11 19 19 C 1.46927 * 120.63329 * 174.93675 * 5 3 2 20 20 C 1.52998 * 109.58834 * 246.16074 * 19 5 3 21 21 C 1.53000 * 109.58573 * 6.58305 * 19 5 3 22 22 H 1.08994 * 109.47010 * 299.99477 * 1 2 3 23 23 H 1.08998 * 109.47275 * 60.00250 * 1 2 3 24 24 H 1.08998 * 109.46796 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.58723 * 113.84163 * 6 5 3 26 26 H 1.09000 * 109.70260 * 353.48642 * 6 5 3 27 27 H 1.09002 * 109.49747 * 65.31762 * 7 6 5 28 28 H 1.08995 * 109.49902 * 185.37936 * 7 6 5 29 29 H 1.09001 * 109.46141 * 181.40597 * 8 7 6 30 30 H 1.09005 * 109.45539 * 301.35669 * 8 7 6 31 31 H 0.97002 * 120.00057 * 180.02562 * 14 13 11 32 32 H 1.08996 * 109.47218 * 59.99995 * 20 19 5 33 33 H 1.08998 * 109.47399 * 180.02562 * 20 19 5 34 34 H 1.09002 * 109.46764 * 299.99510 * 20 19 5 35 35 H 1.09004 * 109.46986 * 55.85574 * 21 19 5 36 36 H 1.08999 * 109.47271 * 175.84900 * 21 19 5 37 37 H 1.08998 * 109.47558 * 295.85190 * 21 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4014 2.2188 0.0005 5 7 3.4091 1.2703 0.0005 6 6 4.2226 0.0520 0.1131 7 6 5.2059 0.2214 1.2755 8 6 6.0182 1.5020 1.0696 9 6 5.0756 2.7083 1.0538 10 1 4.5243 2.7513 1.9932 11 6 5.8788 3.9719 0.8830 12 1 5.7053 4.6109 0.0299 13 6 6.8352 4.3122 1.8161 14 7 7.0462 3.5343 2.8552 15 14 7.8313 5.8781 1.6040 16 1 7.4053 6.5714 0.3618 17 1 7.6071 6.7692 2.7706 18 1 9.2739 5.5384 1.5108 19 6 4.0907 2.5671 -0.1110 20 6 4.8514 2.6343 -1.4368 21 6 3.0593 3.6955 -0.0504 22 1 -0.3633 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 4.7753 -0.1052 -0.8131 26 1 3.5764 -0.8051 0.3030 27 1 4.6534 0.2877 2.2127 28 1 5.8793 -0.6350 1.3101 29 1 6.7359 1.6114 1.8827 30 1 6.5511 1.4453 0.1204 31 1 7.7189 3.7738 3.5118 32 1 4.1507 2.5211 -2.2639 33 1 5.3567 3.5967 -1.5174 34 1 5.5893 1.8329 -1.4733 35 1 2.4741 3.6041 0.8647 36 1 3.5721 4.6573 -0.0591 37 1 2.3969 3.6292 -0.9135 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107246000.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:00 Heat of formation + Delta-G solvation = -88.768172 kcal Electronic energy + Delta-G solvation = -18992.521381 eV Core-core repulsion = 16155.732184 eV Total energy + Delta-G solvation = -2836.789197 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.91951 -39.68329 -37.29590 -35.42295 -34.09169 -33.05273 -29.18920 -28.18275 -27.97576 -26.85125 -24.59120 -22.69938 -22.08911 -20.01365 -18.53716 -18.17490 -17.56283 -17.38332 -16.65905 -15.91954 -15.56736 -15.06812 -14.84470 -14.63671 -14.39534 -13.93870 -13.62333 -13.40293 -13.10530 -12.98758 -12.88100 -12.74384 -12.60820 -12.32273 -12.27102 -11.92206 -11.72992 -11.58722 -11.47334 -11.13668 -10.67999 -10.41021 -10.35376 -9.44409 -8.03608 -6.15444 1.29285 1.43104 1.46878 1.56565 1.83549 2.47435 3.06504 3.24091 4.07577 4.16880 4.23070 4.27115 4.41458 4.42244 4.46351 4.58931 4.69303 4.78296 4.87558 4.91885 4.98199 5.06223 5.07416 5.20753 5.30614 5.41781 5.42675 5.44620 5.57518 5.69590 5.71373 6.00665 6.19148 6.41989 6.56061 6.93017 7.36975 7.51203 9.01020 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.036298 B = 0.007780 C = 0.007135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.204284 B = 3598.071381 C = 3923.573982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 O -0.378 6.378 3 C 0.637 3.363 4 O -0.598 6.598 5 N -0.584 5.584 6 C 0.117 3.883 7 C -0.128 4.128 8 C -0.110 4.110 9 C 0.056 3.944 10 H -0.020 1.020 11 C -0.513 4.513 12 H 0.064 0.936 13 C 0.013 3.987 14 N -0.918 5.918 15 Si 0.949 3.051 16 H -0.265 1.265 17 H -0.289 1.289 18 H -0.281 1.281 19 C 0.184 3.816 20 C -0.134 4.134 21 C -0.104 4.104 22 H 0.053 0.947 23 H 0.060 0.940 24 H 0.137 0.863 25 H 0.084 0.916 26 H 0.100 0.900 27 H 0.038 0.962 28 H 0.089 0.911 29 H 0.062 0.938 30 H 0.048 0.952 31 H 0.258 0.742 32 H 0.051 0.949 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.037 0.963 36 H 0.044 0.956 37 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.718 -8.795 -6.954 13.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 O -0.292 6.292 3 C 0.392 3.608 4 O -0.490 6.490 5 N -0.323 5.323 6 C -0.005 4.005 7 C -0.166 4.166 8 C -0.148 4.148 9 C 0.037 3.963 10 H -0.001 1.001 11 C -0.551 4.551 12 H 0.082 0.918 13 C -0.185 4.185 14 N -0.558 5.558 15 Si 0.775 3.225 16 H -0.189 1.189 17 H -0.215 1.215 18 H -0.207 1.207 19 C 0.102 3.898 20 C -0.192 4.192 21 C -0.162 4.162 22 H 0.072 0.928 23 H 0.079 0.921 24 H 0.155 0.845 25 H 0.102 0.898 26 H 0.118 0.882 27 H 0.057 0.943 28 H 0.107 0.893 29 H 0.080 0.920 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.056 0.944 36 H 0.063 0.937 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.882 -8.547 -6.811 12.915 hybrid contribution 0.432 1.055 0.569 1.274 sum -6.450 -7.492 -6.242 11.692 Atomic orbital electron populations 1.23419 0.73343 1.05360 1.02179 1.86235 1.25399 1.30492 1.87055 1.18425 0.83672 0.82178 0.76562 1.91006 1.65779 1.34567 1.57654 1.47411 1.01488 1.09865 1.73556 1.21837 0.93729 0.85629 0.99314 1.21927 0.98119 0.99294 0.97280 1.21523 0.98885 0.93278 1.01106 1.18888 0.91916 0.94644 0.90892 1.00145 1.21484 1.18640 1.06720 1.08288 0.91809 1.25663 0.98346 0.99425 0.95044 1.70033 1.34485 1.38649 1.12631 0.85637 0.78609 0.80200 0.78007 1.18859 1.21517 1.20666 1.20806 0.91919 0.79807 0.97281 1.21990 0.99575 1.03246 0.94382 1.21939 0.96107 0.96665 1.01443 0.92831 0.92137 0.84475 0.89810 0.88168 0.94333 0.89300 0.91961 0.93376 0.93273 0.92993 0.91139 0.91700 0.94440 0.93687 0.92457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.11 10.56 113.37 1.20 2.30 16 2 O -0.38 -11.44 9.23 -55.46 -0.51 -11.95 16 3 C 0.64 24.07 8.34 129.79 1.08 25.15 16 4 O -0.60 -25.43 11.53 19.78 0.23 -25.20 16 5 N -0.58 -22.07 2.68 -902.18 -2.42 -24.48 16 6 C 0.12 3.62 6.01 86.36 0.52 4.14 16 7 C -0.13 -4.55 6.08 30.67 0.19 -4.36 16 8 C -0.11 -4.89 4.76 30.64 0.15 -4.74 16 9 C 0.06 2.74 1.51 -11.44 -0.02 2.72 16 10 H -0.02 -1.14 8.14 -2.39 -0.02 -1.16 16 11 C -0.51 -26.95 7.11 25.60 0.18 -26.77 16 12 H 0.06 3.27 5.74 -2.92 -0.02 3.25 16 13 C 0.01 0.73 5.30 84.66 0.45 1.18 16 14 N -0.92 -52.16 11.32 21.45 0.24 -51.91 16 15 Si 0.95 42.90 29.54 68.60 2.03 44.93 16 16 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 17 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 18 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 19 C 0.18 7.74 0.78 3.59 0.00 7.74 16 20 C -0.13 -4.92 7.98 71.98 0.57 -4.35 16 21 C -0.10 -4.59 6.76 71.98 0.49 -4.11 16 22 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 23 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.14 1.80 8.14 -2.39 -0.02 1.78 16 25 H 0.08 2.29 7.50 -2.39 -0.02 2.27 16 26 H 0.10 2.68 6.97 -2.39 -0.02 2.67 16 27 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 29 H 0.06 3.21 6.06 -2.39 -0.01 3.19 16 30 H 0.05 2.03 6.49 -2.38 -0.02 2.01 16 31 H 0.26 14.04 8.31 -92.71 -0.77 13.27 16 32 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.07 2.71 6.35 -2.39 -0.02 2.69 16 34 H 0.06 2.23 5.72 -2.39 -0.01 2.22 16 35 H 0.04 1.79 6.74 -2.39 -0.02 1.78 16 36 H 0.04 2.00 6.92 -2.39 -0.02 1.99 16 37 H 0.06 2.42 6.75 -2.39 -0.02 2.40 16 Total: -1.00 -63.49 281.33 5.43 -58.06 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: 1.06 Total: 11.65 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: 4.81 Total: -1.09 kcal Atomic # 7 Polarization: -74.22 SS G_CDS: -2.17 Total: -76.40 kcal Atomic # 8 Polarization: -36.87 SS G_CDS: -0.28 Total: -37.15 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -63.49 5.43 -58.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107246000.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.711 kcal (2) G-P(sol) polarization free energy of solvation -63.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds