Wall clock time and date at job start Mon Mar 30 2020 05:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50700 * 109.47247 * 2 1 4 4 C 1.39201 * 119.21011 * 270.02501 * 3 2 1 5 5 C 1.36067 * 121.71099 * 180.02562 * 4 3 2 6 6 C 1.40887 * 119.47224 * 359.97438 * 5 4 3 7 7 N 1.33023 * 121.75615 * 180.02562 * 6 5 4 8 8 C 1.33020 * 120.94360 * 179.97438 * 7 6 5 9 9 C 1.41245 * 119.02162 * 179.97438 * 8 7 6 10 10 H 1.07998 * 120.00098 * 180.02562 * 9 8 7 11 11 C 1.40162 * 119.99836 * 0.02562 * 9 8 7 12 12 N 1.30654 * 120.00233 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00023 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.47202 * 89.99766 * 13 11 9 15 15 H 1.48497 * 109.47518 * 209.99815 * 13 11 9 16 16 H 1.48505 * 109.46983 * 329.99894 * 13 11 9 17 17 C 1.41264 * 121.95956 * 359.97438 * 8 7 6 18 18 C 1.35969 * 120.39984 * 359.97438 * 17 8 7 19 19 C 1.50696 * 120.90528 * 180.02562 * 18 17 8 20 20 C 1.41106 * 118.19042 * 0.02562 * 18 17 8 21 21 C 1.36395 * 119.20287 * 90.00264 * 3 2 1 22 22 H 1.09004 * 109.46990 * 59.99429 * 1 2 3 23 23 H 1.08998 * 109.47118 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.46640 * 299.99806 * 1 2 3 25 25 H 1.09004 * 109.47221 * 240.00560 * 2 1 3 26 26 H 1.08997 * 109.47285 * 120.00317 * 2 1 3 27 27 H 1.08007 * 119.14375 * 359.97224 * 4 3 2 28 28 H 1.07991 * 120.26443 * 180.02562 * 5 4 3 29 29 H 0.96999 * 120.00441 * 179.97438 * 12 11 9 30 30 H 1.07994 * 119.80086 * 179.97438 * 17 8 7 31 31 H 1.08997 * 109.47719 * 269.98389 * 19 18 17 32 32 H 1.09002 * 109.46820 * 29.98424 * 19 18 17 33 33 H 1.09004 * 109.46958 * 149.98000 * 19 18 17 34 34 H 1.07997 * 120.26070 * 359.72873 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2584 2.0614 -1.2150 5 6 2.7120 3.3429 -1.2744 6 6 2.9612 4.0461 -0.0792 7 7 3.4046 5.3002 -0.0843 8 6 3.6340 5.9491 1.0540 9 6 4.1050 7.2797 1.0013 10 1 4.2970 7.8212 1.9158 11 6 4.3234 7.8972 -0.2379 12 7 4.0917 7.2419 -1.3442 13 14 4.9456 9.6571 -0.3077 14 1 6.4306 9.6568 -0.3261 15 1 4.4355 10.3142 -1.5378 16 1 4.4656 10.3995 0.8856 17 6 3.4206 5.3472 2.3140 18 6 2.9672 4.0680 2.3975 19 6 2.7351 3.4149 3.7356 20 6 2.7200 3.3687 1.1971 21 6 2.2543 2.0482 1.1906 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3632 0.5138 0.8900 25 1 1.8934 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 2.0695 1.5272 -2.1345 28 1 2.8789 3.8175 -2.2300 29 1 4.2424 7.6694 -2.2018 30 1 3.6188 5.9063 3.2165 31 1 3.6476 2.9139 4.0586 32 1 2.4588 4.1741 4.4674 33 1 1.9307 2.6844 3.6486 34 1 2.0673 1.5323 2.1208 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213456038.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:26 Heat of formation + Delta-G solvation = 27.149949 kcal Electronic energy + Delta-G solvation = -16457.881298 eV Core-core repulsion = 13933.427608 eV Total energy + Delta-G solvation = -2524.453690 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 241.116 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.11052 -36.55062 -34.01899 -33.21813 -32.04241 -29.31406 -28.89357 -26.48070 -25.93895 -22.89232 -22.34967 -20.68197 -19.77812 -17.26611 -16.79733 -15.61030 -15.08042 -14.65224 -13.77357 -13.55898 -13.32345 -13.19220 -12.90939 -12.56800 -12.24417 -12.19006 -11.96873 -11.71343 -11.33000 -11.30200 -11.02074 -10.85576 -10.67487 -10.32743 -10.30469 -10.18802 -9.86350 -9.21015 -8.93854 -7.60025 -7.44092 -6.94726 -6.47520 -4.61028 1.74835 2.24818 2.99187 3.02727 3.05674 3.44211 3.84965 4.06623 4.84550 5.37002 5.39722 5.59609 5.69735 5.73559 5.83312 5.86045 5.89843 6.05601 6.13786 6.14930 6.20254 6.26990 6.37170 6.45852 6.52196 6.59752 6.62650 6.96183 7.05648 7.13036 7.28836 7.44358 7.57659 7.67679 7.76821 7.92788 8.18791 8.48840 8.78660 10.06430 10.21669 Molecular weight = 241.12amu Principal moments of inertia in cm(-1) A = 0.033986 B = 0.006575 C = 0.005627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.677759 B = 4257.305905 C = 4975.174899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.069 4.069 3 C -0.173 4.173 4 C -0.091 4.091 5 C -0.135 4.135 6 C 0.187 3.813 7 N -0.503 5.503 8 C 0.251 3.749 9 C -0.408 4.408 10 H 0.086 0.914 11 C 0.062 3.938 12 N -0.694 5.694 13 Si 0.910 3.090 14 H -0.268 1.268 15 H -0.275 1.275 16 H -0.260 1.260 17 C -0.206 4.206 18 C -0.045 4.045 19 C -0.106 4.106 20 C -0.201 4.201 21 C -0.060 4.060 22 H 0.052 0.948 23 H 0.045 0.955 24 H 0.051 0.949 25 H 0.058 0.942 26 H 0.056 0.944 27 H 0.101 0.899 28 H 0.116 0.884 29 H 0.275 0.725 30 H 0.104 0.896 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.620 -6.114 2.816 7.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.106 4.106 3 C -0.175 4.175 4 C -0.111 4.111 5 C -0.155 4.155 6 C 0.053 3.947 7 N -0.218 5.218 8 C 0.120 3.880 9 C -0.440 4.440 10 H 0.104 0.896 11 C -0.165 4.165 12 N -0.314 5.314 13 Si 0.733 3.267 14 H -0.193 1.193 15 H -0.199 1.199 16 H -0.184 1.184 17 C -0.227 4.227 18 C -0.050 4.050 19 C -0.163 4.163 20 C -0.206 4.206 21 C -0.078 4.078 22 H 0.072 0.928 23 H 0.064 0.936 24 H 0.070 0.930 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.119 0.881 28 H 0.134 0.866 29 H 0.087 0.913 30 H 0.122 0.878 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -2.468 -5.662 1.798 6.433 hybrid contribution 0.147 0.406 0.724 0.843 sum -2.321 -5.255 2.522 6.274 Atomic orbital electron populations 1.21768 0.96113 1.00303 1.01979 1.20322 0.95120 0.94048 1.01142 1.18947 1.09059 0.96212 0.93257 1.20286 0.99851 0.94777 0.96210 1.20524 1.03934 0.94170 0.96906 1.20345 0.92164 0.91395 0.90786 1.69325 1.20780 1.05032 1.26710 1.18678 0.89439 0.93495 0.86408 1.19834 1.34605 0.95916 0.93623 0.89553 1.26135 0.94895 1.00049 0.95435 1.70129 1.27096 1.35846 0.98369 0.86289 0.79739 0.81594 0.79065 1.19264 1.19942 1.18421 1.21640 1.06768 0.95471 0.98842 1.19583 0.97616 0.94288 0.93497 1.20683 1.01173 1.00123 0.94302 1.19374 1.11781 0.95580 0.93827 1.20446 0.97604 0.93563 0.96209 0.92843 0.93567 0.92965 0.92349 0.92479 0.88101 0.86552 0.91323 0.87799 0.91988 0.92237 0.92161 0.87983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.90 37.16 0.37 -1.53 16 2 C -0.07 -1.01 6.02 -27.88 -0.17 -1.18 16 3 C -0.17 -3.25 5.10 -104.93 -0.54 -3.78 16 4 C -0.09 -1.80 9.51 -40.00 -0.38 -2.18 16 5 C -0.14 -3.12 10.03 -39.36 -0.39 -3.52 16 6 C 0.19 4.84 6.76 -83.03 -0.56 4.28 16 7 N -0.50 -14.16 7.78 -7.79 -0.06 -14.22 16 8 C 0.25 6.78 6.54 -85.06 -0.56 6.22 16 9 C -0.41 -10.58 9.11 -37.72 -0.34 -10.92 16 10 H 0.09 2.04 7.85 -52.49 -0.41 1.63 16 11 C 0.06 1.54 5.50 -17.33 -0.10 1.45 16 12 N -0.69 -18.26 11.40 55.56 0.63 -17.63 16 13 Si 0.91 17.99 29.56 -169.99 -5.02 12.96 16 14 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 15 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 16 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 17 C -0.21 -4.89 9.34 -39.25 -0.37 -5.25 16 18 C -0.04 -0.99 5.91 -104.35 -0.62 -1.61 16 19 C -0.11 -1.78 9.62 36.00 0.35 -1.43 16 20 C -0.20 -4.69 5.88 -104.82 -0.62 -5.31 16 21 C -0.06 -1.20 8.93 -39.58 -0.35 -1.55 16 22 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.06 0.79 8.07 -51.93 -0.42 0.37 16 26 H 0.06 0.78 8.06 -51.93 -0.42 0.36 16 27 H 0.10 1.70 8.06 -52.48 -0.42 1.27 16 28 H 0.12 2.64 8.06 -52.49 -0.42 2.22 16 29 H 0.28 6.53 8.29 -40.82 -0.34 6.19 16 30 H 0.10 2.21 8.06 -52.49 -0.42 1.78 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.06 0.90 8.10 -51.93 -0.42 0.48 16 33 H 0.06 0.93 6.58 -51.93 -0.34 0.58 16 34 H 0.10 1.78 6.53 -52.49 -0.34 1.44 16 LS Contribution 288.41 15.07 4.35 4.35 Total: -1.00 -28.88 288.41 -8.83 -37.70 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -4.45 Total: 3.13 kcal Atomic # 6 Polarization: -22.02 SS G_CDS: -4.27 Total: -26.30 kcal Atomic # 7 Polarization: -32.42 SS G_CDS: 0.57 Total: -31.85 kcal Atomic # 14 Polarization: 17.99 SS G_CDS: -5.02 Total: 12.96 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -28.88 -8.83 -37.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213456038.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.852 kcal (2) G-P(sol) polarization free energy of solvation -28.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds