Wall clock time and date at job start Mon Mar 30 2020 05:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50593 * 1 3 3 C 1.38523 * 119.83720 * 2 1 4 4 C 1.37413 * 122.64913 * 180.02562 * 3 2 1 5 5 C 1.50850 * 114.84049 * 180.08219 * 4 3 2 6 6 C 1.39714 * 120.19684 * 0.05963 * 4 3 2 7 7 C 1.40790 * 126.65109 * 179.88594 * 6 4 3 8 8 C 1.50867 * 125.61606 * 359.56375 * 7 6 4 9 9 C 1.37003 * 118.96495 * 179.85327 * 7 6 4 10 10 C 1.40603 * 121.41235 * 0.05091 * 9 7 6 11 11 C 1.41127 * 119.71801 * 180.02562 * 10 9 7 12 12 H 1.08005 * 119.99844 * 7.23932 * 11 10 9 13 13 C 1.40156 * 120.00573 * 187.23635 * 11 10 9 14 14 N 1.30657 * 120.00062 * 7.20769 * 13 11 10 15 15 Si 1.86800 * 120.00416 * 187.21039 * 13 11 10 16 16 H 1.48504 * 109.47076 * 84.98865 * 15 13 11 17 17 H 1.48493 * 109.47466 * 204.99144 * 15 13 11 18 18 H 1.48494 * 109.47088 * 324.99250 * 15 13 11 19 19 N 1.32558 * 120.67984 * 0.02818 * 10 9 7 20 20 C 1.33022 * 121.25174 * 359.97013 * 19 10 9 21 21 C 1.35666 * 119.65641 * 179.97438 * 2 1 3 22 22 H 1.08997 * 109.47129 * 270.01961 * 1 2 3 23 23 H 1.09007 * 109.47234 * 30.02228 * 1 2 3 24 24 H 1.08999 * 109.47145 * 150.01818 * 1 2 3 25 25 H 1.08188 * 119.38852 * 0.02562 * 3 2 1 26 26 H 1.08997 * 109.47310 * 264.19749 * 5 4 3 27 27 H 1.09004 * 109.47314 * 24.19319 * 5 4 3 28 28 H 1.09001 * 109.47381 * 144.19468 * 5 4 3 29 29 H 1.08996 * 109.46789 * 84.38863 * 8 7 6 30 30 H 1.09000 * 109.46747 * 204.39089 * 8 7 6 31 31 H 1.08998 * 109.46560 * 324.38750 * 8 7 6 32 32 H 1.08171 * 118.57739 * 180.02562 * 9 7 6 33 33 H 0.96996 * 120.00673 * 180.02562 * 14 13 11 34 34 H 1.08125 * 120.34194 * 359.97438 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5059 0.0000 0.0000 3 6 2.1951 1.2016 0.0000 4 6 3.5676 1.2690 -0.0005 5 6 4.1334 2.6674 0.0015 6 6 4.3287 0.0974 -0.0023 7 6 5.7338 0.0080 -0.0053 8 6 6.6885 1.1761 -0.0165 9 6 6.3198 -1.2304 -0.0037 10 6 5.5485 -2.4061 -0.0002 11 6 6.1896 -3.6633 0.0019 12 1 7.2617 -3.7226 0.1187 13 6 5.4352 -4.8350 -0.1475 14 7 4.1615 -4.7605 -0.4291 15 14 6.2506 -6.5033 0.0560 16 1 6.2734 -6.8709 1.4946 17 1 5.4853 -7.5243 -0.7037 18 1 7.6412 -6.4410 -0.4611 19 7 4.2243 -2.3463 0.0011 20 6 3.5862 -1.1791 -0.0003 21 6 2.1772 -1.1790 0.0005 22 1 -0.3633 0.0004 1.0276 23 1 -0.3634 0.8898 -0.5142 24 1 -0.3633 -0.8901 -0.5135 25 1 1.6416 2.1311 0.0004 26 1 4.3655 2.9669 -1.0204 27 1 3.4009 3.3551 0.4242 28 1 5.0426 2.6907 0.6024 29 1 6.8432 1.5285 1.0033 30 1 7.6420 0.8619 -0.4410 31 1 6.2699 1.9816 -0.6198 32 1 7.3997 -1.2918 -0.0056 33 1 3.6392 -5.5713 -0.5322 34 1 1.6366 -2.1153 0.0014 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213456615.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:53 Heat of formation + Delta-G solvation = 31.028438 kcal Electronic energy + Delta-G solvation = -16642.267163 eV Core-core repulsion = 14117.981656 eV Total energy + Delta-G solvation = -2524.285506 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 241.116 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.15348 -36.46679 -34.27432 -33.19115 -31.54942 -30.05620 -27.60645 -26.62172 -25.70613 -25.24984 -21.59786 -20.85291 -19.20446 -17.55435 -16.39156 -15.56420 -15.06670 -14.50336 -13.75381 -13.38825 -13.22395 -12.92713 -12.85431 -12.49163 -12.32194 -12.14318 -11.94876 -11.73448 -11.54662 -11.32858 -11.24904 -11.04069 -10.70528 -10.44087 -10.23513 -10.09090 -9.82342 -9.15711 -8.84129 -7.57785 -7.39384 -6.82128 -6.54378 -4.59749 1.69712 2.24906 2.99875 3.03533 3.05314 3.43189 3.85580 4.06074 4.81967 5.45456 5.55161 5.64465 5.67338 5.77747 5.79761 5.90774 6.01479 6.03675 6.09332 6.19469 6.22406 6.32326 6.32514 6.41496 6.47810 6.58280 6.67849 6.97220 7.09254 7.14421 7.26736 7.47475 7.59779 7.69355 7.78151 7.95169 8.20309 8.50874 8.79084 10.06524 10.22383 Molecular weight = 241.12amu Principal moments of inertia in cm(-1) A = 0.025411 B = 0.007943 C = 0.006098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.617121 B = 3524.255416 C = 4590.737869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.066 4.066 3 C -0.208 4.208 4 C -0.031 4.031 5 C -0.114 4.114 6 C -0.183 4.183 7 C -0.039 4.039 8 C -0.110 4.110 9 C -0.217 4.217 10 C 0.257 3.743 11 C -0.414 4.414 12 H 0.086 0.914 13 C 0.066 3.934 14 N -0.700 5.700 15 Si 0.910 3.090 16 H -0.266 1.266 17 H -0.275 1.275 18 H -0.261 1.261 19 N -0.507 5.507 20 C 0.188 3.812 21 C -0.141 4.141 22 H 0.060 0.940 23 H 0.055 0.945 24 H 0.059 0.941 25 H 0.097 0.903 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.102 0.898 33 H 0.277 0.723 34 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.539 6.557 0.446 6.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.069 4.069 3 C -0.228 4.228 4 C -0.031 4.031 5 C -0.170 4.170 6 C -0.188 4.188 7 C -0.044 4.044 8 C -0.167 4.167 9 C -0.239 4.239 10 C 0.126 3.874 11 C -0.445 4.445 12 H 0.104 0.896 13 C -0.161 4.161 14 N -0.320 5.320 15 Si 0.733 3.267 16 H -0.191 1.191 17 H -0.200 1.200 18 H -0.185 1.185 19 N -0.222 5.222 20 C 0.054 3.946 21 C -0.161 4.161 22 H 0.078 0.922 23 H 0.074 0.926 24 H 0.078 0.922 25 H 0.115 0.885 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.121 0.879 33 H 0.088 0.912 34 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -1.187 5.642 0.386 5.779 hybrid contribution 0.819 -0.055 0.071 0.824 sum -0.368 5.587 0.457 5.618 Atomic orbital electron populations 1.20694 0.92704 1.01606 1.01252 1.18969 0.94781 0.93405 0.99707 1.20250 0.93426 0.96191 1.12914 1.19377 0.93458 0.93037 0.97260 1.20996 1.01006 0.93723 1.01324 1.18764 0.91899 0.93214 1.14874 1.19643 0.92145 0.94779 0.97818 1.20953 0.97631 0.96863 1.01237 1.21968 0.99368 0.93448 1.09072 1.18345 0.88601 0.91971 0.88469 1.19725 0.95031 0.89629 1.40130 0.89552 1.26102 0.94757 1.01398 0.93854 1.70040 1.06591 1.30181 1.25213 0.86302 0.80281 0.80632 0.79448 1.19143 1.20022 1.18501 1.69084 1.08699 1.21741 1.22719 1.20712 0.93709 0.88267 0.91953 1.20400 0.92392 0.96840 1.06462 0.92159 0.92568 0.92195 0.88508 0.92058 0.92402 0.91707 0.92070 0.92188 0.91810 0.87942 0.91169 0.86574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.65 9.98 35.95 0.36 -1.29 16 2 C -0.07 -1.34 5.80 -105.49 -0.61 -1.95 16 3 C -0.21 -4.05 8.98 -39.78 -0.36 -4.41 16 4 C -0.03 -0.62 5.96 -104.30 -0.62 -1.24 16 5 C -0.11 -1.77 8.39 36.08 0.30 -1.47 16 6 C -0.18 -4.29 5.96 -104.53 -0.62 -4.92 16 7 C -0.04 -0.86 6.00 -104.02 -0.62 -1.48 16 8 C -0.11 -1.84 8.40 36.09 0.30 -1.54 16 9 C -0.22 -5.19 9.10 -39.14 -0.36 -5.55 16 10 C 0.26 6.99 6.49 -85.57 -0.55 6.43 16 11 C -0.41 -10.79 9.12 -37.77 -0.34 -11.14 16 12 H 0.09 2.06 7.86 -52.48 -0.41 1.65 16 13 C 0.07 1.65 5.47 -17.33 -0.09 1.56 16 14 N -0.70 -18.50 11.56 55.56 0.64 -17.86 16 15 Si 0.91 18.12 29.57 -169.99 -5.03 13.09 16 16 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 17 H -0.28 -5.36 7.11 56.52 0.40 -4.96 16 18 H -0.26 -5.06 7.11 56.52 0.40 -4.65 16 19 N -0.51 -14.35 7.82 -7.74 -0.06 -14.41 16 20 C 0.19 4.92 6.73 -82.49 -0.56 4.36 16 21 C -0.14 -3.32 9.51 -39.50 -0.38 -3.69 16 22 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 23 H 0.06 0.77 8.08 -51.92 -0.42 0.35 16 24 H 0.06 0.89 8.07 -51.93 -0.42 0.48 16 25 H 0.10 1.61 7.70 -52.38 -0.40 1.21 16 26 H 0.06 0.88 7.98 -51.93 -0.41 0.46 16 27 H 0.06 0.78 7.67 -51.93 -0.40 0.39 16 28 H 0.06 0.95 5.87 -51.93 -0.30 0.65 16 29 H 0.06 0.93 7.98 -51.93 -0.41 0.52 16 30 H 0.06 0.92 7.72 -51.93 -0.40 0.52 16 31 H 0.06 0.97 5.91 -51.93 -0.31 0.66 16 32 H 0.10 2.19 7.76 -52.39 -0.41 1.79 16 33 H 0.28 6.61 8.29 -40.82 -0.34 6.27 16 34 H 0.12 2.73 8.07 -52.42 -0.42 2.31 16 LS Contribution 283.24 15.07 4.27 4.27 Total: -1.00 -29.44 283.24 -8.61 -38.05 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -4.28 Total: 3.18 kcal Atomic # 6 Polarization: -22.16 SS G_CDS: -4.15 Total: -26.32 kcal Atomic # 7 Polarization: -32.85 SS G_CDS: 0.58 Total: -32.27 kcal Atomic # 14 Polarization: 18.12 SS G_CDS: -5.03 Total: 13.09 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -29.44 -8.61 -38.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213456615.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.075 kcal (2) G-P(sol) polarization free energy of solvation -29.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds