Wall clock time and date at job start Mon Mar 30 2020 05:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50593 * 1 3 3 C 1.38523 * 119.83720 * 2 1 4 4 C 1.37413 * 122.64913 * 180.02562 * 3 2 1 5 5 C 1.50850 * 114.84049 * 180.08219 * 4 3 2 6 6 C 1.39714 * 120.19684 * 0.05963 * 4 3 2 7 7 C 1.40790 * 126.65109 * 179.88594 * 6 4 3 8 8 C 1.50867 * 125.61606 * 359.56375 * 7 6 4 9 9 C 1.37003 * 118.96495 * 179.85327 * 7 6 4 10 10 C 1.40603 * 121.41235 * 0.05091 * 9 7 6 11 11 C 1.41127 * 119.71801 * 180.02562 * 10 9 7 12 12 H 1.08005 * 119.99844 * 7.23932 * 11 10 9 13 13 C 1.40156 * 120.00573 * 187.23635 * 11 10 9 14 14 N 1.30657 * 120.00062 * 7.20769 * 13 11 10 15 15 Si 1.86800 * 120.00416 * 187.21039 * 13 11 10 16 16 H 1.48504 * 109.47076 * 84.98865 * 15 13 11 17 17 H 1.48493 * 109.47466 * 204.99144 * 15 13 11 18 18 H 1.48494 * 109.47088 * 324.99250 * 15 13 11 19 19 N 1.32558 * 120.67984 * 0.02818 * 10 9 7 20 20 C 1.33022 * 121.25174 * 359.97013 * 19 10 9 21 21 C 1.35666 * 119.65641 * 179.97438 * 2 1 3 22 22 H 1.08997 * 109.47129 * 270.01961 * 1 2 3 23 23 H 1.09007 * 109.47234 * 30.02228 * 1 2 3 24 24 H 1.08999 * 109.47145 * 150.01818 * 1 2 3 25 25 H 1.08188 * 119.38852 * 0.02562 * 3 2 1 26 26 H 1.08997 * 109.47310 * 264.19749 * 5 4 3 27 27 H 1.09004 * 109.47314 * 24.19319 * 5 4 3 28 28 H 1.09001 * 109.47381 * 144.19468 * 5 4 3 29 29 H 1.08996 * 109.46789 * 84.38863 * 8 7 6 30 30 H 1.09000 * 109.46747 * 204.39089 * 8 7 6 31 31 H 1.08998 * 109.46560 * 324.38750 * 8 7 6 32 32 H 1.08171 * 118.57739 * 180.02562 * 9 7 6 33 33 H 0.96996 * 120.00673 * 180.02562 * 14 13 11 34 34 H 1.08125 * 120.34194 * 359.97438 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5059 0.0000 0.0000 3 6 2.1951 1.2016 0.0000 4 6 3.5676 1.2690 -0.0005 5 6 4.1334 2.6674 0.0015 6 6 4.3287 0.0974 -0.0023 7 6 5.7338 0.0080 -0.0053 8 6 6.6885 1.1761 -0.0165 9 6 6.3198 -1.2304 -0.0037 10 6 5.5485 -2.4061 -0.0002 11 6 6.1896 -3.6633 0.0019 12 1 7.2617 -3.7226 0.1187 13 6 5.4352 -4.8350 -0.1475 14 7 4.1615 -4.7605 -0.4291 15 14 6.2506 -6.5033 0.0560 16 1 6.2734 -6.8709 1.4946 17 1 5.4853 -7.5243 -0.7037 18 1 7.6412 -6.4410 -0.4611 19 7 4.2243 -2.3463 0.0011 20 6 3.5862 -1.1791 -0.0003 21 6 2.1772 -1.1790 0.0005 22 1 -0.3633 0.0004 1.0276 23 1 -0.3634 0.8898 -0.5142 24 1 -0.3633 -0.8901 -0.5135 25 1 1.6416 2.1311 0.0004 26 1 4.3655 2.9669 -1.0204 27 1 3.4009 3.3551 0.4242 28 1 5.0426 2.6907 0.6024 29 1 6.8432 1.5285 1.0033 30 1 7.6420 0.8619 -0.4410 31 1 6.2699 1.9816 -0.6198 32 1 7.3997 -1.2918 -0.0056 33 1 3.6392 -5.5713 -0.5322 34 1 1.6366 -2.1153 0.0014 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213456615.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:52 Heat of formation + Delta-G solvation = 15.043857 kcal Electronic energy + Delta-G solvation = -16642.960306 eV Core-core repulsion = 14117.981656 eV Total energy + Delta-G solvation = -2524.978650 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 241.116 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.87918 -38.17377 -35.94652 -34.96124 -33.10214 -31.81480 -29.12582 -28.24749 -27.29159 -26.85389 -23.38240 -22.47702 -20.88801 -19.33572 -18.15456 -17.30343 -16.82264 -16.12791 -15.26237 -14.97009 -14.91900 -14.36669 -14.22255 -13.91175 -13.82078 -13.58603 -13.49500 -13.29169 -12.95197 -12.88555 -12.81850 -12.70391 -12.34085 -12.02735 -11.83973 -11.71793 -11.41278 -10.92352 -10.56208 -9.44816 -9.19271 -8.52999 -8.38189 -6.54851 -0.00761 0.47356 1.37026 1.42899 1.52099 1.67964 2.18035 2.33084 3.01861 3.89529 3.94947 4.04533 4.19067 4.20328 4.36979 4.51705 4.64543 4.75725 4.77961 4.82434 4.83496 4.87171 4.92195 4.94748 5.07465 5.11572 5.19115 5.22413 5.39361 5.46119 5.55225 5.77260 5.91103 6.00806 6.05905 6.12465 6.46425 6.65479 6.89856 8.21761 8.39838 Molecular weight = 241.12amu Principal moments of inertia in cm(-1) A = 0.025411 B = 0.007943 C = 0.006098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.617121 B = 3524.255416 C = 4590.737869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.052 4.052 3 C -0.208 4.208 4 C -0.031 4.031 5 C -0.112 4.112 6 C -0.208 4.208 7 C -0.031 4.031 8 C -0.104 4.104 9 C -0.252 4.252 10 C 0.226 3.774 11 C -0.453 4.453 12 H 0.097 0.903 13 C 0.020 3.980 14 N -0.749 5.749 15 Si 0.992 3.008 16 H -0.263 1.263 17 H -0.268 1.268 18 H -0.249 1.249 19 N -0.551 5.551 20 C 0.146 3.854 21 C -0.182 4.182 22 H 0.078 0.922 23 H 0.086 0.914 24 H 0.059 0.941 25 H 0.140 0.860 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.119 0.881 33 H 0.281 0.719 34 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.511 9.408 0.593 9.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.055 4.055 3 C -0.227 4.227 4 C -0.031 4.031 5 C -0.168 4.168 6 C -0.213 4.213 7 C -0.036 4.036 8 C -0.160 4.160 9 C -0.273 4.273 10 C 0.094 3.906 11 C -0.485 4.485 12 H 0.115 0.885 13 C -0.203 4.203 14 N -0.371 5.371 15 Si 0.811 3.189 16 H -0.188 1.188 17 H -0.193 1.193 18 H -0.172 1.172 19 N -0.267 5.267 20 C 0.014 3.986 21 C -0.202 4.202 22 H 0.097 0.903 23 H 0.105 0.895 24 H 0.078 0.922 25 H 0.157 0.843 26 H 0.098 0.902 27 H 0.104 0.896 28 H 0.093 0.907 29 H 0.101 0.899 30 H 0.092 0.908 31 H 0.104 0.896 32 H 0.137 0.863 33 H 0.091 0.909 34 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.171 8.535 0.532 8.632 hybrid contribution 0.646 -0.681 0.031 0.939 sum -0.524 7.855 0.562 7.892 Atomic orbital electron populations 1.20774 0.89263 1.03150 1.02846 1.19516 0.97350 0.92436 0.96148 1.20810 0.93626 0.97346 1.10953 1.19949 0.93936 0.94404 0.94839 1.21090 1.02136 0.90610 1.02938 1.19170 0.92931 0.93533 1.15635 1.20238 0.92516 0.96147 0.94720 1.21022 0.96836 0.95089 1.03093 1.22122 1.00078 0.93539 1.11564 1.18893 0.89054 0.93811 0.88834 1.20119 0.95781 0.90438 1.42168 0.88520 1.27128 0.95112 1.05427 0.92603 1.70179 1.08450 1.31414 1.27062 0.85082 0.79468 0.74934 0.79371 1.18790 1.19283 1.17219 1.69021 1.09637 1.23600 1.24439 1.21295 0.95005 0.89313 0.93000 1.20441 0.91913 0.97726 1.10146 0.90349 0.89526 0.92191 0.84265 0.90220 0.89580 0.90661 0.89927 0.90792 0.89638 0.86293 0.90881 0.88647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.97 9.98 71.20 0.71 -2.26 16 2 C -0.05 -2.05 5.80 -20.43 -0.12 -2.17 16 3 C -0.21 -7.41 8.98 22.14 0.20 -7.21 16 4 C -0.03 -1.16 5.96 -19.65 -0.12 -1.27 16 5 C -0.11 -2.88 8.39 71.28 0.60 -2.29 16 6 C -0.21 -9.80 5.96 -19.80 -0.12 -9.91 16 7 C -0.03 -1.36 6.00 -19.48 -0.12 -1.48 16 8 C -0.10 -3.17 8.40 71.29 0.60 -2.57 16 9 C -0.25 -12.49 9.10 22.56 0.21 -12.28 16 10 C 0.23 13.08 6.49 40.32 0.26 13.34 16 11 C -0.45 -25.10 9.12 23.45 0.21 -24.88 16 12 H 0.10 4.86 7.86 -2.91 -0.02 4.84 16 13 C 0.02 1.05 5.47 85.33 0.47 1.51 16 14 N -0.75 -42.46 11.56 21.86 0.25 -42.21 16 15 Si 0.99 38.68 29.57 68.60 2.03 40.71 16 16 H -0.26 -10.00 7.11 99.48 0.71 -9.30 16 17 H -0.27 -10.00 7.11 99.48 0.71 -9.29 16 18 H -0.25 -9.09 7.11 99.48 0.71 -8.38 16 19 N -0.55 -33.47 7.82 -178.41 -1.39 -34.86 16 20 C 0.15 8.05 6.73 42.11 0.28 8.34 16 21 C -0.18 -8.98 9.51 22.33 0.21 -8.77 16 22 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 23 H 0.09 1.98 8.08 -2.38 -0.02 1.96 16 24 H 0.06 1.72 8.07 -2.39 -0.02 1.70 16 25 H 0.14 3.80 7.70 -2.81 -0.02 3.78 16 26 H 0.08 1.84 7.98 -2.39 -0.02 1.82 16 27 H 0.09 1.79 7.67 -2.38 -0.02 1.77 16 28 H 0.07 1.82 5.87 -2.39 -0.01 1.81 16 29 H 0.08 2.21 7.98 -2.39 -0.02 2.19 16 30 H 0.07 2.06 7.72 -2.39 -0.02 2.04 16 31 H 0.08 2.23 5.91 -2.39 -0.01 2.22 16 32 H 0.12 5.24 7.76 -2.82 -0.02 5.21 16 33 H 0.28 14.35 8.29 -92.71 -0.77 13.58 16 34 H 0.10 4.90 8.07 -2.85 -0.02 4.88 16 Total: -1.00 -70.73 283.24 5.27 -65.46 By element: Atomic # 1 Polarization: 21.71 SS G_CDS: 1.10 Total: 22.81 kcal Atomic # 6 Polarization: -55.19 SS G_CDS: 3.28 Total: -51.91 kcal Atomic # 7 Polarization: -75.93 SS G_CDS: -1.14 Total: -77.07 kcal Atomic # 14 Polarization: 38.68 SS G_CDS: 2.03 Total: 40.71 kcal Total: -70.73 5.27 -65.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213456615.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.505 kcal (2) G-P(sol) polarization free energy of solvation -70.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds