Wall clock time and date at job start Mon Mar 30 2020 06:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 115.54882 * 2 1 4 4 C 1.52996 * 117.49492 * 145.67708 * 2 1 3 5 5 C 1.53002 * 60.00175 * 107.51240 * 4 2 1 6 6 C 1.50697 * 117.50115 * 107.48783 * 5 4 2 7 7 H 1.07995 * 119.99893 * 46.12187 * 6 5 4 8 8 C 1.37876 * 119.99906 * 226.12745 * 6 5 4 9 9 N 1.31516 * 119.99752 * 184.63485 * 8 6 5 10 10 Si 1.86800 * 120.00022 * 4.62984 * 8 6 5 11 11 H 1.48494 * 109.47233 * 84.79438 * 10 8 6 12 12 H 1.48507 * 109.46992 * 204.79409 * 10 8 6 13 13 H 1.48495 * 109.47058 * 324.79458 * 10 8 6 14 14 N 1.46497 * 117.49393 * 252.51163 * 5 4 2 15 15 C 1.34781 * 119.99850 * 254.45314 * 14 5 4 16 16 O 1.21508 * 119.99784 * 5.00930 * 15 14 5 17 17 O 1.34637 * 120.00227 * 185.01047 * 15 14 5 18 18 C 1.45197 * 117.00025 * 183.34175 * 17 15 14 19 19 C 1.53001 * 109.47153 * 60.17358 * 18 17 15 20 20 C 1.52999 * 109.47272 * 180.17335 * 18 17 15 21 21 C 1.52995 * 109.47196 * 300.17325 * 18 17 15 22 22 H 1.09001 * 109.46906 * 325.58018 * 1 2 3 23 23 H 1.09002 * 109.47023 * 85.57652 * 1 2 3 24 24 H 1.09000 * 109.47209 * 205.57728 * 1 2 3 25 25 H 1.08999 * 117.49596 * 215.00204 * 4 2 1 26 26 H 1.08995 * 117.50399 * 359.97438 * 4 2 1 27 27 H 0.97002 * 119.99582 * 179.97438 * 9 8 6 28 28 H 0.96995 * 120.00850 * 74.45367 * 14 5 4 29 29 H 1.09001 * 109.46906 * 64.79066 * 19 18 17 30 30 H 1.08997 * 109.47203 * 184.79328 * 19 18 17 31 31 H 1.09000 * 109.47231 * 304.79397 * 19 18 17 32 32 H 1.09004 * 109.47245 * 59.99662 * 20 18 17 33 33 H 1.08991 * 109.47431 * 180.02562 * 20 18 17 34 34 H 1.09009 * 109.47096 * 300.00273 * 20 18 17 35 35 H 1.09001 * 109.47403 * 66.81618 * 21 18 17 36 36 H 1.09006 * 109.47183 * 186.81589 * 21 18 17 37 37 H 1.09003 * 109.47538 * 306.81597 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2364 -1.1208 0.7652 5 6 2.2369 -1.1209 -0.7648 6 6 3.5299 -0.7809 -1.4602 7 1 4.4539 -1.2348 -1.1342 8 6 3.5330 0.1099 -2.5126 9 7 4.6443 0.3376 -3.1780 10 14 1.9588 0.9931 -2.9934 11 1 1.7929 2.2037 -2.1495 12 1 2.0315 1.3919 -4.4221 13 1 0.8007 0.0861 -2.7909 14 7 1.3969 -2.1123 -1.4413 15 6 1.9618 -3.1852 -2.0297 16 8 3.1566 -3.3786 -1.9216 17 8 1.2024 -4.0428 -2.7373 18 6 1.8641 -5.2155 -3.2805 19 6 2.4558 -6.0426 -2.1373 20 6 0.8494 -6.0627 -4.0508 21 6 2.9844 -4.7770 -4.2257 22 1 -0.3633 0.8478 0.5809 23 1 -0.3633 0.0793 -1.0246 24 1 -0.3633 -0.9269 0.4437 25 1 3.1713 -0.8748 1.2688 26 1 1.6112 -1.8580 1.2690 27 1 4.6464 0.9640 -3.9187 28 1 0.4342 -1.9966 -1.4659 29 1 1.6500 -6.4261 -1.5115 30 1 3.0247 -6.8764 -2.5487 31 1 3.1143 -5.4145 -1.5373 32 1 0.4278 -5.4735 -4.8652 33 1 1.3460 -6.9433 -4.4582 34 1 0.0511 -6.3751 -3.3774 35 1 3.7671 -4.2777 -3.6545 36 1 3.4011 -5.6515 -4.7256 37 1 2.5833 -4.0895 -4.9704 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000215528981.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:56 Heat of formation + Delta-G solvation = -58.354522 kcal Electronic energy + Delta-G solvation = -18685.574516 eV Core-core repulsion = 15850.104154 eV Total energy + Delta-G solvation = -2835.470362 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.87793 -37.88731 -35.67298 -33.53021 -32.26849 -31.69686 -28.21243 -27.12720 -26.95413 -25.37314 -22.46401 -20.33168 -19.40720 -19.05559 -17.50540 -16.65776 -15.61983 -15.28553 -14.88928 -14.26462 -13.88990 -13.72468 -13.40862 -13.02023 -12.84436 -12.65318 -12.22434 -11.94532 -11.62390 -11.51410 -11.36069 -11.18307 -11.09707 -10.93150 -10.76993 -10.59959 -10.43580 -9.89102 -9.74794 -9.40426 -9.09171 -8.87329 -8.44222 -7.67007 -6.11880 -4.13340 2.97970 3.28888 3.36527 3.39460 3.92351 4.40163 4.76305 4.85960 5.08820 5.11452 5.27531 5.32363 5.60656 5.69099 5.78822 5.81929 5.92794 5.93620 6.01692 6.03064 6.07667 6.24498 6.28422 6.32586 6.41496 6.53910 6.65280 6.69438 6.89252 7.06336 7.14839 7.56219 7.74887 8.30082 8.71902 9.02337 9.49077 9.54206 10.98603 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.023952 B = 0.009543 C = 0.008390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.747222 B = 2933.431184 C = 3336.577575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.178 4.178 3 H 0.107 0.893 4 C -0.184 4.184 5 C 0.242 3.758 6 C -0.459 4.459 7 H 0.087 0.913 8 C 0.081 3.919 9 N -0.882 5.882 10 Si 0.877 3.123 11 H -0.275 1.275 12 H -0.295 1.295 13 H -0.258 1.258 14 N -0.686 5.686 15 C 0.645 3.355 16 O -0.535 6.535 17 O -0.384 6.384 18 C 0.137 3.863 19 C -0.180 4.180 20 C -0.138 4.138 21 C -0.181 4.181 22 H 0.054 0.946 23 H 0.054 0.946 24 H 0.052 0.948 25 H 0.093 0.907 26 H 0.075 0.925 27 H 0.265 0.735 28 H 0.379 0.621 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.089 0.911 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.061 0.939 35 H 0.097 0.903 36 H 0.059 0.941 37 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.157 -7.849 1.215 12.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.198 4.198 3 H 0.125 0.875 4 C -0.223 4.223 5 C 0.160 3.840 6 C -0.497 4.497 7 H 0.105 0.895 8 C -0.124 4.124 9 N -0.519 5.519 10 Si 0.705 3.295 11 H -0.201 1.201 12 H -0.222 1.222 13 H -0.182 1.182 14 N -0.343 5.343 15 C 0.397 3.603 16 O -0.420 6.420 17 O -0.301 6.301 18 C 0.100 3.900 19 C -0.237 4.237 20 C -0.195 4.195 21 C -0.239 4.239 22 H 0.073 0.927 23 H 0.073 0.927 24 H 0.071 0.929 25 H 0.111 0.889 26 H 0.094 0.906 27 H 0.075 0.925 28 H 0.213 0.787 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.107 0.893 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.115 0.885 36 H 0.078 0.922 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.438 -7.909 1.051 11.613 hybrid contribution -1.251 0.587 -0.467 1.458 sum -9.688 -7.322 0.584 12.158 Atomic orbital electron populations 1.21432 0.94618 1.01172 1.01281 1.22804 0.93627 0.96006 1.07317 0.87505 1.23362 1.01511 1.00047 0.97356 1.18681 0.90901 0.86917 0.87548 1.20280 0.90645 1.23539 1.15245 0.89470 1.25014 0.95969 0.96337 0.95042 1.69914 1.27072 1.34697 1.20220 0.86902 0.84972 0.80536 0.77097 1.20110 1.22207 1.18214 1.45457 1.09434 1.22208 1.57217 1.18124 0.84115 0.80054 0.78003 1.90889 1.13385 1.74332 1.63424 1.86266 1.43611 1.34134 1.66086 1.21823 0.92471 0.82550 0.93156 1.22464 1.01781 1.00500 0.98931 1.21829 0.98784 0.98823 1.00071 1.22513 0.99995 1.01683 0.99666 0.92713 0.92668 0.92916 0.88878 0.90621 0.92516 0.78734 0.92812 0.91765 0.89258 0.91835 0.90762 0.91994 0.88453 0.92246 0.92487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.09 8.90 37.16 0.33 -1.76 16 2 C -0.18 -3.57 4.00 -90.62 -0.36 -3.94 16 3 H 0.11 2.24 7.56 -51.93 -0.39 1.85 16 4 C -0.18 -3.71 9.81 -26.73 -0.26 -3.97 16 5 C 0.24 5.64 1.30 -132.97 -0.17 5.47 16 6 C -0.46 -12.94 7.55 -34.44 -0.26 -13.20 16 7 H 0.09 2.78 8.05 -52.49 -0.42 2.36 16 8 C 0.08 2.32 5.47 -17.82 -0.10 2.22 16 9 N -0.88 -26.93 13.96 55.43 0.77 -26.16 16 10 Si 0.88 21.48 25.29 -169.99 -4.30 17.18 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.30 -7.39 7.11 56.52 0.40 -6.99 16 13 H -0.26 -5.91 5.71 56.52 0.32 -5.59 16 14 N -0.69 -15.01 4.97 -53.55 -0.27 -15.28 16 15 C 0.64 14.72 7.80 54.06 0.42 15.14 16 16 O -0.53 -13.69 10.51 -19.28 -0.20 -13.89 16 17 O -0.38 -7.61 9.94 -40.32 -0.40 -8.01 16 18 C 0.14 2.28 1.13 -90.62 -0.10 2.17 16 19 C -0.18 -2.79 8.44 37.16 0.31 -2.48 16 20 C -0.14 -1.72 8.85 37.16 0.33 -1.39 16 21 C -0.18 -3.18 8.25 37.16 0.31 -2.88 16 22 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.05 0.92 6.71 -51.93 -0.35 0.57 16 24 H 0.05 0.78 7.87 -51.93 -0.41 0.37 16 25 H 0.09 1.88 8.14 -51.93 -0.42 1.46 16 26 H 0.08 1.38 8.05 -51.93 -0.42 0.96 16 27 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 28 H 0.38 7.30 7.54 -40.82 -0.31 6.99 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.09 1.68 5.91 -51.93 -0.31 1.37 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 35 H 0.10 2.08 5.97 -51.93 -0.31 1.77 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 295.33 15.07 4.45 4.45 Total: -1.00 -31.45 295.33 -5.43 -36.89 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -5.93 Total: 9.41 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: 0.44 Total: -4.61 kcal Atomic # 7 Polarization: -41.94 SS G_CDS: 0.51 Total: -41.43 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: -0.60 Total: -21.89 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.30 Total: 17.18 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.45 -5.43 -36.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215528981.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.467 kcal (2) G-P(sol) polarization free energy of solvation -31.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds