Wall clock time and date at job start Mon Mar 30 2020 06:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 115.55853 * 2 1 4 4 C 1.53000 * 117.50243 * 214.31613 * 2 1 3 5 5 C 1.52993 * 117.50439 * 145.69030 * 2 1 3 6 6 C 1.50703 * 117.50393 * 214.98260 * 5 2 1 7 7 H 1.07993 * 119.99611 * 256.84472 * 6 5 2 8 8 C 1.37880 * 119.99976 * 76.83856 * 6 5 2 9 9 N 1.31510 * 119.99808 * 4.98666 * 8 6 5 10 10 Si 1.86797 * 119.99762 * 184.98652 * 8 6 5 11 11 H 1.48500 * 109.47257 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.47203 * 120.00431 * 10 8 6 13 13 H 1.48507 * 109.46772 * 239.99786 * 10 8 6 14 14 N 1.46510 * 117.51545 * 0.02562 * 5 2 1 15 15 C 1.34778 * 119.99793 * 179.86398 * 14 5 2 16 16 O 1.21507 * 120.00049 * 5.67263 * 15 14 5 17 17 O 1.34637 * 119.99638 * 185.67382 * 15 14 5 18 18 C 1.45192 * 116.99907 * 182.53625 * 17 15 14 19 19 C 1.53002 * 109.47550 * 57.86377 * 18 17 15 20 20 C 1.53003 * 109.47173 * 177.86396 * 18 17 15 21 21 C 1.53002 * 109.47340 * 297.86325 * 18 17 15 22 22 H 1.09003 * 109.47012 * 154.29736 * 1 2 3 23 23 H 1.09003 * 109.47102 * 274.29522 * 1 2 3 24 24 H 1.08995 * 109.47644 * 34.29306 * 1 2 3 25 25 H 1.08995 * 117.50207 * 145.01901 * 4 2 1 26 26 H 1.09002 * 117.49232 * 359.97438 * 4 2 1 27 27 H 0.97005 * 119.99818 * 174.99583 * 9 8 6 28 28 H 0.97000 * 119.99620 * 359.86020 * 14 5 2 29 29 H 1.09003 * 109.47196 * 64.50150 * 19 18 17 30 30 H 1.09001 * 109.47192 * 184.50456 * 19 18 17 31 31 H 1.09003 * 109.46639 * 304.50888 * 19 18 17 32 32 H 1.08994 * 109.47219 * 59.99733 * 20 18 17 33 33 H 1.09000 * 109.47432 * 179.97438 * 20 18 17 34 34 H 1.08996 * 109.47170 * 299.99678 * 20 18 17 35 35 H 1.08996 * 109.46872 * 59.99455 * 21 18 17 36 36 H 1.09000 * 109.47462 * 180.02562 * 21 18 17 37 37 H 1.09007 * 109.46581 * 300.00152 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2365 -1.1209 -0.7651 5 6 2.2365 -1.1209 0.7649 6 6 3.5293 -0.7810 1.4608 7 1 4.4714 -1.0815 1.0266 8 6 3.5093 -0.0864 2.6516 9 7 2.3620 0.1940 3.2301 10 14 5.1118 0.4564 3.4432 11 1 6.2534 0.0201 2.5996 12 1 5.1256 1.9360 3.5689 13 1 5.2305 -0.1559 4.7909 14 7 1.3966 -2.1128 1.4411 15 6 1.9666 -3.1231 2.1271 16 8 3.1726 -3.1547 2.2721 17 8 1.1997 -4.0975 2.6518 18 6 1.8754 -5.1232 3.4260 19 6 2.6336 -4.4716 4.5843 20 6 0.8428 -6.1061 3.9814 21 6 2.8619 -5.8729 2.5284 22 1 -0.3633 -0.9260 -0.4457 23 1 -0.3633 0.0770 1.0248 24 1 -0.3634 0.8490 -0.5790 25 1 3.1715 -0.8750 -1.2683 26 1 1.6112 -1.8586 -1.2681 27 1 2.3496 0.6180 4.1025 28 1 0.4302 -2.0422 1.3950 29 1 1.9232 -4.0053 5.2670 30 1 3.2051 -5.2313 5.1176 31 1 3.3127 -3.7138 4.1933 32 1 0.3026 -6.5704 3.1564 33 1 1.3500 -6.8765 4.5623 34 1 0.1400 -5.5721 4.6210 35 1 3.5974 -5.1727 2.1327 36 1 3.3688 -6.6433 3.1095 37 1 2.3216 -6.3372 1.7033 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000215529030.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:59 Heat of formation + Delta-G solvation = -61.366812 kcal Electronic energy + Delta-G solvation = -18708.778061 eV Core-core repulsion = 15873.177076 eV Total energy + Delta-G solvation = -2835.600985 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.64921 -37.53134 -35.41387 -33.35458 -32.11116 -31.36586 -27.87356 -27.02658 -26.87918 -25.08215 -22.28175 -20.15003 -19.18856 -18.92647 -17.26336 -16.46322 -15.47253 -15.03302 -14.49820 -13.98108 -13.83254 -13.70524 -13.46247 -12.89264 -12.28740 -12.24411 -12.12698 -11.76568 -11.41173 -11.39903 -11.23398 -11.01717 -10.94369 -10.86380 -10.64339 -10.56354 -10.27883 -9.88495 -9.62234 -9.17190 -8.96180 -8.65802 -8.23531 -7.29511 -5.99007 -3.97730 3.21688 3.37160 3.42629 3.48212 4.19680 4.47661 5.03973 5.18007 5.19743 5.23244 5.38657 5.49031 5.77147 5.89488 5.91046 6.03506 6.09297 6.10980 6.14894 6.27735 6.31972 6.34807 6.38352 6.63461 6.70381 6.77333 6.81165 6.95261 6.96931 7.34032 7.38127 7.92302 8.01528 8.22833 8.94118 8.96698 9.61746 9.83490 11.08608 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.019625 B = 0.010521 C = 0.007953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.437399 B = 2660.751019 C = 3519.909790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.152 4.152 3 H 0.098 0.902 4 C -0.218 4.218 5 C 0.288 3.712 6 C -0.455 4.455 7 H 0.067 0.933 8 C 0.078 3.922 9 N -0.874 5.874 10 Si 0.895 3.105 11 H -0.272 1.272 12 H -0.287 1.287 13 H -0.286 1.286 14 N -0.664 5.664 15 C 0.648 3.352 16 O -0.540 6.540 17 O -0.387 6.387 18 C 0.139 3.861 19 C -0.184 4.184 20 C -0.138 4.138 21 C -0.179 4.179 22 H 0.042 0.958 23 H 0.059 0.941 24 H 0.044 0.956 25 H 0.084 0.916 26 H 0.070 0.930 27 H 0.258 0.742 28 H 0.378 0.622 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.097 0.903 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.062 0.938 35 H 0.091 0.909 36 H 0.059 0.941 37 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.891 -7.539 -0.708 8.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.172 4.172 3 H 0.116 0.884 4 C -0.257 4.257 5 C 0.205 3.795 6 C -0.493 4.493 7 H 0.085 0.915 8 C -0.126 4.126 9 N -0.511 5.511 10 Si 0.723 3.277 11 H -0.196 1.196 12 H -0.213 1.213 13 H -0.212 1.212 14 N -0.319 5.319 15 C 0.400 3.600 16 O -0.427 6.427 17 O -0.304 6.304 18 C 0.102 3.898 19 C -0.241 4.241 20 C -0.195 4.195 21 C -0.236 4.236 22 H 0.061 0.939 23 H 0.078 0.922 24 H 0.064 0.936 25 H 0.103 0.897 26 H 0.088 0.912 27 H 0.067 0.933 28 H 0.211 0.789 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.116 0.884 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.110 0.890 36 H 0.078 0.922 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.345 -7.494 -0.490 8.221 hybrid contribution 0.259 0.283 0.635 0.742 sum -3.086 -7.211 0.146 7.845 Atomic orbital electron populations 1.21262 0.95021 0.99902 1.01222 1.22522 0.93143 0.95477 1.06064 0.88383 1.23589 1.01641 1.01768 0.98693 1.18189 0.90601 0.86237 0.84522 1.20332 0.89666 1.32252 1.07099 0.91525 1.24904 0.96057 0.94942 0.96696 1.69989 1.24483 1.41589 1.15043 0.86484 0.84170 0.77662 0.79373 1.19618 1.21289 1.21178 1.44851 1.08683 1.24842 1.53481 1.18116 0.84197 0.79551 0.78145 1.90840 1.13016 1.77147 1.61686 1.86264 1.42562 1.35977 1.65613 1.21725 0.92013 0.85749 0.90337 1.22521 1.01627 1.02492 0.97436 1.21822 0.98760 0.97887 1.01013 1.22472 1.00499 1.00990 0.99632 0.93893 0.92233 0.93647 0.89750 0.91177 0.93265 0.78940 0.92778 0.92357 0.88399 0.92039 0.90987 0.91912 0.89029 0.92206 0.92860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.13 8.97 37.15 0.33 -1.79 16 2 C -0.15 -3.30 6.11 -90.63 -0.55 -3.85 16 3 H 0.10 2.23 8.14 -51.93 -0.42 1.80 16 4 C -0.22 -4.63 9.81 -26.73 -0.26 -4.89 16 5 C 0.29 7.03 2.08 -132.97 -0.28 6.76 16 6 C -0.45 -12.54 6.42 -34.44 -0.22 -12.76 16 7 H 0.07 1.91 7.82 -52.49 -0.41 1.50 16 8 C 0.08 2.17 5.45 -17.82 -0.10 2.07 16 9 N -0.87 -24.62 13.26 55.43 0.74 -23.88 16 10 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 11 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 14 N -0.66 -15.54 5.48 -53.55 -0.29 -15.84 16 15 C 0.65 15.50 7.92 54.06 0.43 15.93 16 16 O -0.54 -14.13 9.90 -19.28 -0.19 -14.32 16 17 O -0.39 -8.08 9.94 -40.31 -0.40 -8.48 16 18 C 0.14 2.43 1.13 -90.62 -0.10 2.33 16 19 C -0.18 -3.34 8.40 37.16 0.31 -3.03 16 20 C -0.14 -1.83 8.85 37.16 0.33 -1.50 16 21 C -0.18 -2.94 8.41 37.16 0.31 -2.62 16 22 H 0.04 0.71 7.81 -51.93 -0.41 0.30 16 23 H 0.06 1.14 8.05 -51.93 -0.42 0.73 16 24 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 26 H 0.07 1.37 8.05 -51.93 -0.42 0.95 16 27 H 0.26 7.04 8.32 -40.82 -0.34 6.70 16 28 H 0.38 8.04 7.51 -40.82 -0.31 7.73 16 29 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.10 2.19 5.70 -51.93 -0.30 1.89 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.09 1.80 5.96 -51.93 -0.31 1.49 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 303.61 15.07 4.58 4.58 Total: -1.00 -29.82 303.61 -6.32 -36.14 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -5.93 Total: 8.16 kcal Atomic # 6 Polarization: -3.57 SS G_CDS: 0.20 Total: -3.37 kcal Atomic # 7 Polarization: -40.16 SS G_CDS: 0.44 Total: -39.72 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: -0.59 Total: -22.80 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -29.82 -6.32 -36.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215529030.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.223 kcal (2) G-P(sol) polarization free energy of solvation -29.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds