Wall clock time and date at job start Mon Mar 30 2020 05:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39353 * 119.49578 * 2 1 4 4 C 1.36107 * 120.96052 * 180.23426 * 3 2 1 5 5 C 1.40619 * 119.65342 * 359.49588 * 4 3 2 6 6 C 1.40372 * 121.17352 * 180.22403 * 5 4 3 7 7 C 1.37980 * 119.49012 * 180.26813 * 6 5 4 8 8 N 1.39187 * 119.68669 * 179.97438 * 7 6 5 9 9 C 1.46499 * 120.00212 * 354.84822 * 8 7 6 10 10 C 1.36836 * 119.99929 * 174.84489 * 8 7 6 11 11 H 1.08000 * 120.00192 * 26.51478 * 10 8 7 12 12 C 1.38786 * 120.00178 * 206.51895 * 10 8 7 13 13 N 1.31600 * 119.99986 * 9.95801 * 12 10 8 14 14 Si 1.86800 * 120.00290 * 189.96333 * 12 10 8 15 15 H 1.48501 * 109.47084 * 359.97438 * 14 12 10 16 16 H 1.48506 * 109.47347 * 119.99561 * 14 12 10 17 17 H 1.48497 * 109.47224 * 239.99699 * 14 12 10 18 18 C 1.40182 * 120.63209 * 0.02562 * 7 6 5 19 19 C 1.35828 * 120.90032 * 0.02562 * 18 7 6 20 20 C 1.40667 * 119.93864 * 359.97438 * 19 18 7 21 21 C 1.36138 * 119.49797 * 179.97438 * 2 1 3 22 22 H 1.08997 * 109.47202 * 90.00765 * 1 2 3 23 23 H 1.09007 * 109.47010 * 209.99795 * 1 2 3 24 24 H 1.08993 * 109.47456 * 330.00355 * 1 2 3 25 25 H 1.08000 * 119.52465 * 359.95233 * 3 2 1 26 26 H 1.07992 * 120.16845 * 179.72219 * 4 3 2 27 27 H 1.08009 * 120.25708 * 0.29108 * 6 5 4 28 28 H 1.09003 * 109.47123 * 85.18356 * 9 8 7 29 29 H 1.08992 * 109.47374 * 205.18452 * 9 8 7 30 30 H 1.08997 * 109.46574 * 325.18984 * 9 8 7 31 31 H 0.96997 * 119.99963 * 180.02562 * 13 12 10 32 32 H 1.07999 * 119.54938 * 179.97438 * 18 7 6 33 33 H 1.08006 * 120.02954 * 180.02562 * 19 18 7 34 34 H 1.08001 * 120.14979 * 359.97438 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1931 1.2129 0.0000 4 6 3.5538 1.2477 -0.0048 5 6 4.2805 0.0439 0.0010 6 6 5.6842 0.0426 0.0010 7 6 6.3623 -1.1591 0.0011 8 7 7.7542 -1.1652 0.0006 9 6 8.4922 0.0951 -0.1140 10 6 8.4332 -2.3484 0.1072 11 1 7.9743 -3.2666 -0.2286 12 6 9.7117 -2.3686 0.6469 13 7 10.1954 -1.2945 1.2334 14 14 10.7460 -3.9205 0.5406 15 1 9.9782 -4.9800 -0.1617 16 1 11.9944 -3.6329 -0.2106 17 1 11.0875 -4.3825 1.9099 18 6 5.6629 -2.3739 0.0007 19 6 4.3048 -2.3969 -0.0004 20 6 3.5823 -1.1900 -0.0006 21 6 2.1774 -1.1849 0.0005 22 1 -0.3633 -0.0001 -1.0276 23 1 -0.3633 -0.8901 0.5138 24 1 -0.3634 0.8899 0.5137 25 1 1.6372 2.1388 -0.0008 26 1 4.0724 2.1949 -0.0092 27 1 6.2293 0.9750 0.0013 28 1 8.6015 0.5433 0.8736 29 1 9.4782 -0.0983 -0.5363 30 1 7.9459 0.7781 -0.7644 31 1 11.0890 -1.3085 1.6103 32 1 6.2113 -3.3043 0.0003 33 1 3.7802 -3.3410 -0.0003 34 1 1.6316 -2.1169 0.0014 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258763355.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:04 Heat of formation + Delta-G solvation = 45.935850 kcal Electronic energy + Delta-G solvation = -16326.549854 eV Core-core repulsion = 13802.910781 eV Total energy + Delta-G solvation = -2523.639073 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 241.116 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.49580 -37.35183 -34.83801 -32.21435 -32.04513 -29.63576 -28.80212 -26.64813 -25.99080 -23.35275 -22.32876 -21.02244 -20.24982 -17.80546 -16.50272 -15.94872 -15.26862 -14.90646 -14.07770 -13.88862 -13.57857 -13.54871 -13.26642 -12.74523 -12.40093 -12.29129 -12.09492 -11.86086 -11.52335 -11.30773 -11.11763 -10.89038 -10.62463 -10.52593 -10.35710 -10.22972 -9.74379 -9.34052 -9.02289 -8.30402 -7.38088 -6.61987 -6.31901 -3.88540 1.42221 2.01141 2.95398 3.07259 3.11667 3.15312 3.83581 3.95903 4.79299 4.85963 5.13558 5.30432 5.37013 5.60664 5.65430 5.82549 5.87065 6.00559 6.11423 6.15406 6.30990 6.31729 6.41606 6.51444 6.71365 6.81154 6.92614 7.06612 7.10667 7.14313 7.24286 7.25779 7.40724 7.53822 7.70112 7.78353 8.02717 8.52542 9.14750 9.47526 10.50295 Molecular weight = 241.12amu Principal moments of inertia in cm(-1) A = 0.049306 B = 0.005468 C = 0.004992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.748549 B = 5119.934668 C = 5607.883536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.156 4.156 3 C -0.104 4.104 4 C -0.142 4.142 5 C 0.025 3.975 6 C -0.283 4.283 7 C 0.215 3.785 8 N -0.437 5.437 9 C 0.121 3.879 10 C -0.314 4.314 11 H 0.097 0.903 12 C 0.030 3.970 13 N -0.871 5.871 14 Si 0.928 3.072 15 H -0.267 1.267 16 H -0.279 1.279 17 H -0.279 1.279 18 C -0.152 4.152 19 C -0.079 4.079 20 C -0.134 4.134 21 C -0.074 4.074 22 H 0.056 0.944 23 H 0.055 0.945 24 H 0.055 0.945 25 H 0.105 0.895 26 H 0.111 0.889 27 H 0.110 0.890 28 H 0.051 0.949 29 H 0.072 0.928 30 H 0.030 0.970 31 H 0.271 0.729 32 H 0.121 0.879 33 H 0.111 0.889 34 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.387 1.092 -2.213 9.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.158 4.158 3 C -0.122 4.122 4 C -0.161 4.161 5 C 0.024 3.976 6 C -0.310 4.310 7 C 0.095 3.905 8 N -0.120 5.120 9 C -0.022 4.022 10 C -0.443 4.443 11 H 0.115 0.885 12 C -0.175 4.175 13 N -0.507 5.507 14 Si 0.755 3.245 15 H -0.191 1.191 16 H -0.204 1.204 17 H -0.205 1.205 18 C -0.173 4.173 19 C -0.099 4.099 20 C -0.136 4.136 21 C -0.092 4.092 22 H 0.075 0.925 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.123 0.877 26 H 0.129 0.871 27 H 0.128 0.872 28 H 0.069 0.931 29 H 0.091 0.909 30 H 0.049 0.951 31 H 0.081 0.919 32 H 0.139 0.861 33 H 0.129 0.871 34 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -8.754 1.114 -2.106 9.072 hybrid contribution 0.749 -0.622 0.097 0.978 sum -8.005 0.491 -2.009 8.268 Atomic orbital electron populations 1.20626 0.92537 1.01511 1.01032 1.19152 0.95026 0.93320 1.08257 1.20457 0.94223 0.96531 1.01015 1.20790 0.93830 0.96937 1.04524 1.17629 0.92790 0.92001 0.95192 1.20108 0.92257 0.95929 1.22701 1.17979 0.84174 0.93310 0.95041 1.42667 1.00698 1.06702 1.61950 1.21450 0.95894 0.84809 1.00085 1.19683 0.98505 0.86988 1.39084 0.88533 1.25428 0.98265 0.98780 0.95069 1.70076 1.17730 1.28561 1.34286 0.85826 0.79566 0.80905 0.78244 1.19133 1.20443 1.20483 1.20552 0.93803 0.97255 1.05655 1.20621 0.93645 0.96216 0.99396 1.17713 0.92747 0.93071 1.10071 1.20660 0.93077 0.96709 0.98780 0.92539 0.92585 0.92628 0.87701 0.87062 0.87233 0.93050 0.90912 0.95141 0.91924 0.86145 0.87051 0.87338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.21 9.98 36.01 0.36 -0.85 16 2 C -0.16 -2.48 5.84 -104.96 -0.61 -3.10 16 3 C -0.10 -1.69 9.59 -39.93 -0.38 -2.07 16 4 C -0.14 -2.56 9.77 -39.45 -0.39 -2.94 16 5 C 0.03 0.52 5.74 -106.84 -0.61 -0.10 16 6 C -0.28 -6.21 8.91 -38.87 -0.35 -6.56 16 7 C 0.21 5.01 6.50 -83.89 -0.55 4.46 16 8 N -0.44 -10.85 3.12 -120.53 -0.38 -11.22 16 9 C 0.12 2.80 8.16 59.85 0.49 3.28 16 10 C -0.31 -7.98 9.00 -15.12 -0.14 -8.11 16 11 H 0.10 2.36 6.10 -52.49 -0.32 2.04 16 12 C 0.03 0.74 5.09 -17.45 -0.09 0.65 16 13 N -0.87 -22.59 10.82 55.49 0.60 -21.99 16 14 Si 0.93 19.34 29.56 -169.99 -5.03 14.31 16 15 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 16 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 17 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 18 C -0.15 -3.26 9.19 -39.72 -0.36 -3.63 16 19 C -0.08 -1.52 9.74 -39.53 -0.39 -1.90 16 20 C -0.13 -2.63 5.74 -106.78 -0.61 -3.24 16 21 C -0.07 -1.26 9.36 -39.49 -0.37 -1.63 16 22 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 23 H 0.06 0.62 8.07 -51.92 -0.42 0.20 16 24 H 0.05 0.60 8.08 -51.93 -0.42 0.18 16 25 H 0.10 1.41 8.06 -52.49 -0.42 0.99 16 26 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 27 H 0.11 2.32 6.34 -52.48 -0.33 1.99 16 28 H 0.05 1.23 7.82 -51.93 -0.41 0.83 16 29 H 0.07 1.74 6.83 -51.93 -0.35 1.38 16 30 H 0.03 0.63 6.68 -51.93 -0.35 0.28 16 31 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 32 H 0.12 2.52 6.09 -52.49 -0.32 2.20 16 33 H 0.11 1.78 8.06 -52.48 -0.42 1.36 16 34 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 LS Contribution 282.13 15.07 4.25 4.25 Total: -1.00 -27.04 282.13 -8.71 -35.76 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -4.17 Total: 4.63 kcal Atomic # 6 Polarization: -21.73 SS G_CDS: -4.00 Total: -25.73 kcal Atomic # 7 Polarization: -33.44 SS G_CDS: 0.22 Total: -33.21 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.03 Total: 14.31 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -27.04 -8.71 -35.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258763355.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.693 kcal (2) G-P(sol) polarization free energy of solvation -27.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds