Wall clock time and date at job start Mon Mar 30 2020 05:19:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39370 * 119.50761 * 2 1 4 4 C 1.36090 * 120.98756 * 179.97438 * 3 2 1 5 5 C 1.40545 * 119.65401 * 0.02562 * 4 3 2 6 6 C 1.40543 * 121.28245 * 179.97438 * 5 4 3 7 7 C 1.36087 * 119.65290 * 179.97438 * 6 5 4 8 8 C 1.50698 * 119.50963 * 180.02562 * 7 6 5 9 9 H 1.09004 * 109.47046 * 340.02346 * 8 7 6 10 10 N 1.46896 * 109.47558 * 220.02922 * 8 7 6 11 11 C 1.50697 * 109.47171 * 100.02045 * 8 7 6 12 12 H 1.07995 * 120.00174 * 0.02562 * 11 8 7 13 13 C 1.37883 * 119.99714 * 180.02562 * 11 8 7 14 14 N 1.31510 * 120.00104 * 359.97438 * 13 11 8 15 15 Si 1.86802 * 119.99720 * 180.02562 * 13 11 8 16 16 H 1.48507 * 109.47155 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47268 * 119.99924 * 15 13 11 18 18 H 1.48500 * 109.47147 * 240.00247 * 15 13 11 19 19 C 1.39378 * 120.98593 * 0.04691 * 7 6 5 20 20 C 1.36085 * 120.99327 * 359.97438 * 19 7 6 21 21 C 1.40545 * 119.65444 * 359.97438 * 20 19 7 22 22 C 1.36091 * 119.50253 * 180.25615 * 2 1 3 23 23 H 1.09001 * 109.47186 * 89.99625 * 1 2 3 24 24 H 1.08997 * 109.47694 * 210.00606 * 1 2 3 25 25 H 1.09002 * 109.46790 * 330.00480 * 1 2 3 26 26 H 1.07998 * 119.50720 * 359.94947 * 3 2 1 27 27 H 1.07997 * 120.17418 * 180.02562 * 4 3 2 28 28 H 1.07999 * 120.17197 * 0.03511 * 6 5 4 29 29 H 1.00900 * 111.00236 * 176.04368 * 10 8 7 30 30 H 1.00910 * 110.99516 * 299.99206 * 10 8 7 31 31 H 0.97007 * 119.99737 * 179.97438 * 14 13 11 32 32 H 1.08008 * 119.49983 * 179.97438 * 19 7 6 33 33 H 1.07997 * 120.17782 * 179.97438 * 20 19 7 34 34 H 1.08007 * 120.17646 * 359.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1935 1.2129 0.0000 4 6 3.5539 1.2481 0.0005 5 6 4.2806 0.0451 0.0005 6 6 5.6860 0.0414 0.0005 7 6 6.3562 -1.1430 0.0010 8 6 7.8632 -1.1431 0.0016 9 1 8.2268 -0.1774 -0.3496 10 7 8.3532 -2.2038 -0.8887 11 6 8.3650 -1.3900 1.4010 12 1 7.6629 -1.5330 2.2090 13 6 9.7205 -1.4334 1.6496 14 7 10.5754 -1.2598 0.6656 15 14 10.3425 -1.7402 3.3841 16 1 9.1871 -1.9028 4.3028 17 1 11.1680 -2.9745 3.4029 18 1 11.1668 -0.5866 3.8257 19 6 5.6697 -2.3559 0.0006 20 6 4.3093 -2.3912 0.0002 21 6 3.5825 -1.1882 0.0007 22 6 2.1772 -1.1844 -0.0053 23 1 -0.3633 0.0001 -1.0277 24 1 -0.3634 -0.8899 0.5139 25 1 -0.3633 0.8901 0.5138 26 1 1.6375 2.1388 -0.0008 27 1 4.0724 2.1954 0.0009 28 1 6.2312 0.9737 0.0011 29 1 9.3598 -2.1833 -0.9558 30 1 8.0295 -3.1097 -0.5840 31 1 11.5291 -1.2899 0.8406 32 1 6.2258 -3.2818 0.0006 33 1 3.7908 -3.3385 -0.0006 34 1 1.6320 -2.1168 -0.0090 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258954052.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:22 Heat of formation + Delta-G solvation = 24.381706 kcal Electronic energy + Delta-G solvation = -16227.112314 eV Core-core repulsion = 13702.538584 eV Total energy + Delta-G solvation = -2524.573730 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 241.116 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.93352 -36.99003 -34.35010 -32.55527 -31.74068 -30.08330 -29.03582 -26.83208 -25.53376 -22.86448 -22.49089 -21.45434 -20.06782 -16.77660 -16.42431 -16.06059 -15.73147 -14.71065 -14.24220 -14.09254 -13.79178 -13.46990 -12.99964 -12.88092 -12.68036 -12.48623 -12.15261 -11.84424 -11.63864 -11.23558 -11.07489 -10.86886 -10.58648 -10.44432 -10.26976 -9.94665 -9.60669 -9.38020 -8.68270 -7.88731 -7.39512 -7.14004 -6.12035 -4.29562 1.04207 1.54275 2.59379 3.19073 3.28057 3.32785 3.51019 4.29677 4.68468 4.94553 5.00747 5.09913 5.24489 5.34566 5.51602 5.56266 5.61205 5.77901 5.82094 5.85912 6.04530 6.13205 6.19988 6.47672 6.48412 6.71864 6.72517 6.80132 6.88173 7.13773 7.17791 7.30220 7.61489 7.71010 7.75625 8.06457 8.63244 8.89373 9.07736 9.42542 10.84900 Molecular weight = 241.12amu Principal moments of inertia in cm(-1) A = 0.039005 B = 0.005394 C = 0.005284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.680422 B = 5189.885783 C = 5297.451953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.105 4.105 3 C -0.127 4.127 4 C -0.103 4.103 5 C -0.047 4.047 6 C -0.126 4.126 7 C -0.018 4.018 8 C 0.236 3.764 9 H 0.048 0.952 10 N -0.850 5.850 11 C -0.544 4.544 12 H 0.057 0.943 13 C 0.066 3.934 14 N -0.893 5.893 15 Si 0.897 3.103 16 H -0.273 1.273 17 H -0.283 1.283 18 H -0.282 1.282 19 C -0.083 4.083 20 C -0.128 4.128 21 C -0.061 4.061 22 C -0.105 4.105 23 H 0.064 0.936 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.114 0.886 27 H 0.122 0.878 28 H 0.121 0.879 29 H 0.356 0.644 30 H 0.311 0.689 31 H 0.265 0.735 32 H 0.120 0.880 33 H 0.117 0.883 34 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.383 1.148 -1.347 14.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.105 4.105 3 C -0.145 4.145 4 C -0.121 4.121 5 C -0.047 4.047 6 C -0.144 4.144 7 C -0.019 4.019 8 C 0.127 3.873 9 H 0.066 0.934 10 N -0.380 5.380 11 C -0.584 4.584 12 H 0.075 0.925 13 C -0.136 4.136 14 N -0.532 5.532 15 Si 0.724 3.276 16 H -0.197 1.197 17 H -0.209 1.209 18 H -0.208 1.208 19 C -0.102 4.102 20 C -0.146 4.146 21 C -0.061 4.061 22 C -0.123 4.123 23 H 0.083 0.917 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.132 0.868 27 H 0.140 0.860 28 H 0.139 0.861 29 H 0.172 0.828 30 H 0.121 0.879 31 H 0.075 0.925 32 H 0.138 0.862 33 H 0.135 0.865 34 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -14.590 1.546 -1.971 14.803 hybrid contribution 1.025 -0.479 1.911 2.221 sum -13.565 1.067 -0.059 13.607 Atomic orbital electron populations 1.20753 0.91824 1.02241 1.01799 1.19445 0.95626 0.93256 1.02169 1.20575 0.94286 0.96995 1.02602 1.20997 0.94045 0.97193 0.99834 1.18097 0.93730 0.92605 1.00271 1.20836 0.91940 0.98557 1.03090 1.20221 0.98313 0.91904 0.91472 1.18078 0.84528 0.93594 0.91146 0.93407 1.59547 1.18643 1.06134 1.53673 1.21850 0.91822 1.49978 0.94704 0.92499 1.25021 0.96748 0.94395 0.97437 1.69754 1.02442 1.49755 1.31245 0.86459 0.78826 0.77897 0.84379 1.19713 1.20898 1.20810 1.20784 0.93445 0.98588 0.97335 1.20901 0.94423 0.96405 1.02846 1.17978 0.93030 0.93173 1.01918 1.20787 0.92966 0.97347 1.01204 0.91691 0.91969 0.91980 0.86787 0.86028 0.86086 0.82771 0.87944 0.92471 0.86187 0.86490 0.86408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 9.98 36.01 0.36 -0.72 16 2 C -0.10 -1.41 5.84 -104.97 -0.61 -2.03 16 3 C -0.13 -1.74 9.58 -39.93 -0.38 -2.12 16 4 C -0.10 -1.60 9.77 -39.48 -0.39 -1.99 16 5 C -0.05 -0.86 5.74 -106.83 -0.61 -1.47 16 6 C -0.13 -2.55 9.36 -39.49 -0.37 -2.92 16 7 C -0.02 -0.40 4.86 -104.97 -0.51 -0.91 16 8 C 0.24 5.86 2.92 -70.02 -0.20 5.66 16 9 H 0.05 1.30 7.95 -51.93 -0.41 0.88 16 10 N -0.85 -20.13 9.01 -6.65 -0.06 -20.19 16 11 C -0.54 -14.53 8.70 -34.44 -0.30 -14.83 16 12 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 13 C 0.07 1.77 5.38 -17.82 -0.10 1.68 16 14 N -0.89 -24.37 11.54 55.43 0.64 -23.73 16 15 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 16 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 19 C -0.08 -1.64 9.18 -39.93 -0.37 -2.01 16 20 C -0.13 -2.22 9.77 -39.49 -0.39 -2.61 16 21 C -0.06 -1.07 5.74 -106.84 -0.61 -1.68 16 22 C -0.11 -1.55 9.37 -39.49 -0.37 -1.92 16 23 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.06 0.55 8.07 -51.93 -0.42 0.13 16 25 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 26 H 0.11 1.26 8.06 -52.49 -0.42 0.84 16 27 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 28 H 0.12 2.34 8.00 -52.49 -0.42 1.92 16 29 H 0.36 9.01 7.08 -39.29 -0.28 8.73 16 30 H 0.31 6.93 7.28 -39.29 -0.29 6.64 16 31 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 32 H 0.12 2.27 6.60 -52.48 -0.35 1.92 16 33 H 0.12 1.68 8.06 -52.49 -0.42 1.25 16 34 H 0.12 1.45 8.06 -52.48 -0.42 1.03 16 LS Contribution 287.10 15.07 4.33 4.33 Total: -1.00 -28.07 287.10 -9.20 -37.27 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: -4.24 Total: 14.37 kcal Atomic # 6 Polarization: -23.01 SS G_CDS: -4.85 Total: -27.86 kcal Atomic # 7 Polarization: -44.50 SS G_CDS: 0.58 Total: -43.92 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -28.07 -9.20 -37.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258954052.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.651 kcal (2) G-P(sol) polarization free energy of solvation -28.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds