Wall clock time and date at job start Mon Mar 30 2020 05:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46414 * 111.00223 * 2 1 4 4 C 1.53274 * 109.77478 * 198.17885 * 3 2 1 5 5 S 1.81893 * 108.41444 * 297.83687 * 4 3 2 6 6 C 1.81768 * 102.01030 * 51.21487 * 5 4 3 7 7 H 1.08997 * 109.62518 * 189.08586 * 6 5 4 8 8 C 1.52954 * 109.52548 * 68.22271 * 6 5 4 9 9 C 1.53048 * 109.31457 * 180.21701 * 8 6 5 10 10 C 1.52959 * 109.60265 * 59.69766 * 9 8 6 11 11 H 1.09005 * 109.44407 * 60.56244 * 10 9 8 12 12 C 1.50700 * 109.44397 * 180.46133 * 10 9 8 13 13 H 1.07995 * 119.99694 * 119.99757 * 12 10 9 14 14 C 1.37877 * 120.00002 * 299.99732 * 12 10 9 15 15 N 1.31512 * 119.99890 * 0.02562 * 14 12 10 16 16 Si 1.86803 * 119.99921 * 179.97438 * 14 12 10 17 17 H 1.48493 * 109.46795 * 90.00215 * 16 14 12 18 18 H 1.48503 * 109.46814 * 210.00245 * 16 14 12 19 19 H 1.48503 * 109.47013 * 330.00108 * 16 14 12 20 20 C 1.53017 * 109.63687 * 300.51156 * 10 9 8 21 21 C 1.46616 * 110.99826 * 126.11181 * 2 1 3 22 22 H 1.09002 * 109.59929 * 282.68456 * 21 2 1 23 23 H 1.09004 * 109.46952 * 293.89087 * 1 2 3 24 24 H 1.08993 * 109.46993 * 53.88944 * 1 2 3 25 25 H 1.09004 * 109.47388 * 173.89367 * 1 2 3 26 26 H 1.08998 * 109.42257 * 318.27543 * 3 2 1 27 27 H 1.09007 * 109.42144 * 78.09065 * 3 2 1 28 28 H 1.09001 * 109.67514 * 57.56622 * 4 3 2 29 29 H 1.09004 * 109.67410 * 178.06804 * 4 3 2 30 30 H 1.08993 * 109.49876 * 300.17726 * 8 6 5 31 31 H 1.09000 * 109.49100 * 60.27162 * 8 6 5 32 32 H 1.08998 * 109.44458 * 179.73049 * 9 8 6 33 33 H 1.08998 * 109.45408 * 299.65514 * 9 8 6 34 34 H 0.97003 * 119.99944 * 179.97438 * 15 14 12 35 35 H 1.08998 * 109.51099 * 300.27722 * 20 10 9 36 36 H 1.09000 * 109.51400 * 180.11715 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9938 1.3669 0.0000 4 6 3.4589 1.3598 -0.4500 5 16 4.4227 0.3858 0.7462 6 6 3.4635 -1.1554 0.8392 7 1 3.8454 -1.7760 1.6498 8 6 3.5696 -1.9046 -0.4901 9 6 2.7561 -3.1984 -0.4084 10 6 1.2914 -2.8661 -0.1184 11 1 0.8934 -2.2477 -0.9230 12 6 0.4959 -4.1428 -0.0274 13 1 -0.0275 -4.3890 0.8846 14 6 0.4364 -4.9965 -1.1084 15 7 1.0743 -4.6969 -2.2188 16 14 -0.5491 -6.5794 -0.9954 17 1 -1.9448 -6.3258 -1.4345 18 1 0.0661 -7.6090 -1.8711 19 1 -0.5518 -7.0616 0.4091 20 6 1.1889 -2.1067 1.2061 21 6 1.9944 -0.8067 1.1058 22 1 1.9149 -0.2462 2.0373 23 1 -0.3633 0.4162 0.9397 24 1 -0.3633 0.6056 -0.8302 25 1 -0.3634 -1.0218 -0.1093 26 1 1.4074 1.9802 -0.6842 27 1 1.9256 1.7813 1.0059 28 1 3.5370 0.9080 -1.4389 29 1 3.8378 2.3814 -0.4823 30 1 3.1787 -1.2790 -1.2925 31 1 4.6140 -2.1437 -0.6905 32 1 2.8263 -3.7317 -1.3564 33 1 3.1510 -3.8257 0.3907 34 1 1.0328 -5.2977 -2.9792 35 1 1.5903 -2.7225 2.0109 36 1 0.1444 -1.8728 1.4118 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259690539.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:36 Heat of formation + Delta-G solvation = -2.412130 kcal Electronic energy + Delta-G solvation = -16594.086296 eV Core-core repulsion = 14203.794649 eV Total energy + Delta-G solvation = -2390.291647 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 241.120 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.16624 -35.26568 -32.63509 -31.46262 -29.53302 -28.64972 -25.11592 -24.60232 -22.43864 -21.19290 -20.62335 -18.07822 -16.66343 -16.11386 -15.36019 -14.91252 -14.50503 -14.21471 -14.10245 -13.26017 -12.70531 -12.53010 -12.22880 -12.15626 -11.92133 -11.58357 -11.43476 -11.13928 -11.01187 -10.88901 -10.63461 -10.34678 -10.19071 -9.87285 -9.51362 -9.25363 -8.91928 -8.53053 -8.24399 -7.88692 -7.35041 -5.93847 -4.00368 2.15284 2.85698 3.31318 3.38751 3.41451 4.14532 4.46234 5.04731 5.14830 5.35469 5.36279 5.37767 5.49267 5.63810 5.74873 5.82835 5.91985 5.98175 6.02306 6.21607 6.39663 6.46131 6.49617 6.64215 6.65685 6.86481 7.11236 7.33839 7.40628 7.50746 7.59531 7.79738 8.13160 8.22262 8.51384 9.04670 9.63970 11.10943 Molecular weight = 241.12amu Principal moments of inertia in cm(-1) A = 0.038577 B = 0.007654 C = 0.007118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.643856 B = 3657.268982 C = 3932.477614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.537 5.537 3 C 0.057 3.943 4 C -0.069 4.069 5 S -0.309 6.309 6 C -0.021 4.021 7 H 0.102 0.898 8 C -0.100 4.100 9 C -0.104 4.104 10 C 0.055 3.945 11 H 0.044 0.956 12 C -0.516 4.516 13 H 0.051 0.949 14 C 0.063 3.937 15 N -0.887 5.887 16 Si 0.885 3.115 17 H -0.282 1.282 18 H -0.287 1.287 19 H -0.276 1.276 20 C -0.107 4.107 21 C 0.095 3.905 22 H 0.037 0.963 23 H 0.016 0.984 24 H 0.059 0.941 25 H 0.096 0.904 26 H 0.079 0.921 27 H 0.039 0.961 28 H 0.091 0.909 29 H 0.098 0.902 30 H 0.069 0.931 31 H 0.046 0.954 32 H 0.093 0.907 33 H 0.029 0.971 34 H 0.259 0.741 35 H 0.054 0.946 36 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.122 10.141 3.661 10.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.262 5.262 3 C -0.073 4.073 4 C -0.217 4.217 5 S -0.079 6.079 6 C -0.149 4.149 7 H 0.120 0.880 8 C -0.139 4.139 9 C -0.144 4.144 10 C 0.037 3.963 11 H 0.062 0.938 12 C -0.555 4.555 13 H 0.069 0.931 14 C -0.138 4.138 15 N -0.526 5.526 16 Si 0.714 3.286 17 H -0.208 1.208 18 H -0.213 1.213 19 H -0.201 1.201 20 C -0.146 4.146 21 C -0.015 4.015 22 H 0.055 0.945 23 H 0.034 0.966 24 H 0.078 0.922 25 H 0.114 0.886 26 H 0.097 0.903 27 H 0.057 0.943 28 H 0.110 0.890 29 H 0.116 0.884 30 H 0.088 0.912 31 H 0.064 0.936 32 H 0.112 0.888 33 H 0.048 0.952 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.310 10.190 3.615 11.308 hybrid contribution -1.748 -0.804 0.174 1.932 sum 1.562 9.387 3.790 10.243 Atomic orbital electron populations 1.22491 0.86444 1.04369 0.98916 1.61055 1.08247 1.11017 1.45834 1.22188 0.94347 0.90696 1.00062 1.23408 0.96393 1.01270 1.00661 1.86557 1.42725 1.19671 1.58944 1.23413 0.95191 0.93141 1.03188 0.88038 1.21778 0.99393 0.98666 0.94107 1.21622 0.96255 0.93486 1.03022 1.18629 0.92579 0.94011 0.91113 0.93849 1.21263 1.30126 1.05331 0.98736 0.93056 1.24933 0.95565 0.97819 0.95493 1.69882 1.42423 1.37105 1.03163 0.86704 0.80298 0.83759 0.77858 1.20848 1.21331 1.20089 1.21957 0.97549 0.93207 1.01879 1.21917 0.93550 0.95588 0.90420 0.94504 0.96560 0.92181 0.88582 0.90308 0.94296 0.89048 0.88413 0.91246 0.93564 0.88832 0.95247 0.93147 0.92750 0.92702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 8.27 60.07 0.50 0.89 16 2 N -0.54 -8.93 3.04 -234.98 -0.72 -9.65 16 3 C 0.06 0.79 5.43 -3.95 -0.02 0.77 16 4 C -0.07 -0.95 6.33 37.30 0.24 -0.72 16 5 S -0.31 -4.99 21.79 -107.50 -2.34 -7.33 16 6 C -0.02 -0.37 2.73 -26.58 -0.07 -0.44 16 7 H 0.10 1.80 8.14 -51.93 -0.42 1.38 16 8 C -0.10 -1.97 4.98 -26.73 -0.13 -2.11 16 9 C -0.10 -2.40 4.97 -26.73 -0.13 -2.53 16 10 C 0.05 1.29 1.55 -91.78 -0.14 1.15 16 11 H 0.04 1.12 6.31 -51.93 -0.33 0.79 16 12 C -0.52 -13.69 8.56 -34.44 -0.29 -13.99 16 13 H 0.05 1.35 7.74 -52.49 -0.41 0.95 16 14 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 15 N -0.89 -24.84 11.32 55.43 0.63 -24.21 16 16 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 20 C -0.11 -2.12 4.09 -26.59 -0.11 -2.23 16 21 C 0.10 1.67 2.18 -67.57 -0.15 1.52 16 22 H 0.04 0.63 7.93 -51.93 -0.41 0.22 16 23 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 24 H 0.06 0.85 7.93 -51.93 -0.41 0.44 16 25 H 0.10 1.76 5.00 -51.93 -0.26 1.50 16 26 H 0.08 0.96 7.81 -51.93 -0.41 0.55 16 27 H 0.04 0.54 7.93 -51.92 -0.41 0.13 16 28 H 0.09 1.35 7.56 -51.93 -0.39 0.95 16 29 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.07 1.44 6.64 -51.93 -0.34 1.09 16 31 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 33 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.26 6.97 8.31 -40.82 -0.34 6.64 16 35 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.05 1.06 6.41 -51.93 -0.33 0.73 16 LS Contribution 275.90 15.07 4.16 4.16 Total: -1.00 -27.11 275.90 -9.40 -36.51 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -5.69 Total: 0.61 kcal Atomic # 6 Polarization: -15.64 SS G_CDS: -0.42 Total: -16.06 kcal Atomic # 7 Polarization: -33.77 SS G_CDS: -0.09 Total: -33.86 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: -4.99 SS G_CDS: -2.34 Total: -7.33 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -27.11 -9.40 -36.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259690539.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.097 kcal (2) G-P(sol) polarization free energy of solvation -27.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds