Wall clock time and date at job start Mon Mar 30 2020 05:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37786 * 120.11813 * 2 1 4 4 C 1.38792 * 120.68837 * 180.02562 * 3 2 1 5 5 C 1.36677 * 120.51336 * 359.97438 * 4 3 2 6 6 C 1.39574 * 119.71975 * 359.97438 * 5 4 3 7 7 C 1.46696 * 133.92980 * 180.09639 * 6 5 4 8 8 C 1.34064 * 107.21896 * 180.02562 * 7 6 5 9 9 N 1.37525 * 109.54664 * 359.97438 * 8 7 6 10 10 H 0.97004 * 124.96782 * 179.97438 * 9 8 7 11 11 C 1.37513 * 110.05263 * 359.96059 * 9 8 7 12 12 C 1.51673 * 110.15099 * 179.97438 * 8 7 6 13 13 C 1.54390 * 105.02438 * 17.00349 * 12 8 7 14 14 H 1.08995 * 110.96333 * 92.43931 * 13 12 8 15 15 C 1.50702 * 110.95985 * 216.14443 * 13 12 8 16 16 H 1.08002 * 120.00299 * 115.53272 * 15 13 12 17 17 C 1.37884 * 119.99942 * 295.24830 * 15 13 12 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 13 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 13 20 20 H 1.48496 * 109.47341 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46983 * 120.00379 * 19 17 15 22 22 H 1.48503 * 109.47491 * 240.00192 * 19 17 15 23 23 C 1.51371 * 142.11992 * 0.10371 * 7 6 5 24 24 H 1.09003 * 109.47048 * 270.01571 * 1 2 3 25 25 H 1.09000 * 109.47605 * 30.01997 * 1 2 3 26 26 H 1.09002 * 109.47260 * 150.02338 * 1 2 3 27 27 H 1.07994 * 119.65639 * 0.02562 * 3 2 1 28 28 H 1.08003 * 119.74370 * 179.97438 * 4 3 2 29 29 H 1.08001 * 120.14119 * 179.97438 * 5 4 3 30 30 H 1.09003 * 110.33150 * 258.11333 * 12 8 7 31 31 H 1.09003 * 110.41788 * 135.93793 * 12 8 7 32 32 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 33 33 H 1.09006 * 110.38417 * 44.17389 * 23 7 6 34 34 H 1.08999 * 110.34298 * 281.87126 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1918 0.0000 4 6 3.5862 1.2057 -0.0005 5 6 4.2919 0.0351 -0.0005 6 6 3.6110 -1.1833 0.0005 7 6 4.0368 -2.5871 0.0026 8 6 2.9266 -3.3386 0.0022 9 7 1.8191 -2.5232 0.0006 10 1 0.9001 -2.8338 -0.0003 11 6 2.2053 -1.2034 0.0008 12 6 3.2920 -4.8106 0.0037 13 6 4.7720 -4.8551 0.4411 14 1 4.8560 -4.9805 1.5205 15 6 5.5162 -5.9460 -0.2851 16 1 6.3183 -5.6938 -0.9629 17 6 5.1768 -7.2666 -0.0798 18 7 4.2000 -7.5738 0.7456 19 14 6.1043 -8.6191 -0.9740 20 1 7.1496 -8.0146 -1.8382 21 1 6.7433 -9.5206 0.0182 22 1 5.1576 -9.3977 -1.8125 23 6 5.2730 -3.4606 0.0063 24 1 -0.3633 0.0003 1.0277 25 1 -0.3634 0.8898 -0.5141 26 1 -0.3634 -0.8902 -0.5135 27 1 1.6547 2.1250 0.0004 28 1 4.1127 2.1487 -0.0009 29 1 5.3717 0.0529 -0.0014 30 1 3.1798 -5.2297 -0.9963 31 1 2.6706 -5.3560 0.7140 32 1 3.9611 -8.5028 0.8897 33 1 6.0043 -3.0807 0.7198 34 1 5.7063 -3.5084 -0.9928 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259821289.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:52 Heat of formation + Delta-G solvation = 48.059274 kcal Electronic energy + Delta-G solvation = -16427.475382 eV Core-core repulsion = 13903.928388 eV Total energy + Delta-G solvation = -2523.546994 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 241.116 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.99285 -37.41407 -35.10313 -32.91026 -31.93409 -29.51168 -27.55121 -26.62776 -26.17410 -24.45391 -21.54947 -20.94628 -19.39828 -18.15619 -16.99979 -16.40620 -15.61233 -14.80645 -14.51842 -14.43992 -13.88765 -13.58093 -13.14849 -12.71373 -12.33120 -12.19315 -12.05644 -11.62575 -11.39581 -11.11840 -10.95158 -10.79949 -10.63428 -10.50969 -10.43933 -10.07587 -9.29183 -9.06044 -8.78032 -8.49946 -7.66237 -6.88979 -6.09751 -4.12918 1.48844 1.99050 3.26216 3.31930 3.35662 3.39945 3.44317 4.23935 4.39177 4.97390 5.04236 5.22342 5.26301 5.42246 5.46960 5.59976 5.71867 5.76350 5.89985 6.00376 6.15731 6.32076 6.50897 6.52131 6.60790 6.81533 6.87325 6.94765 6.96553 7.14573 7.26294 7.37101 7.53742 7.74401 7.78953 7.92146 8.09228 8.35643 8.91112 9.52510 11.00297 Molecular weight = 241.12amu Principal moments of inertia in cm(-1) A = 0.047802 B = 0.005461 C = 0.005030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.606958 B = 5125.961433 C = 5565.641567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.102 4.102 3 C -0.115 4.115 4 C -0.154 4.154 5 C -0.077 4.077 6 C -0.079 4.079 7 C -0.199 4.199 8 C 0.056 3.944 9 N -0.585 5.585 10 H 0.405 0.595 11 C 0.100 3.900 12 C -0.026 4.026 13 C 0.061 3.939 14 H 0.040 0.960 15 C -0.512 4.512 16 H 0.062 0.938 17 C 0.063 3.937 18 N -0.890 5.890 19 Si 0.893 3.107 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.042 4.042 24 H 0.064 0.936 25 H 0.066 0.934 26 H 0.055 0.945 27 H 0.117 0.883 28 H 0.115 0.885 29 H 0.117 0.883 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.261 0.739 33 H 0.049 0.951 34 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.623 12.707 -1.194 13.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.105 4.105 3 C -0.134 4.134 4 C -0.173 4.173 5 C -0.096 4.096 6 C -0.084 4.084 7 C -0.204 4.204 8 C -0.051 4.051 9 N -0.186 5.186 10 H 0.240 0.760 11 C -0.008 4.008 12 C -0.065 4.065 13 C 0.042 3.958 14 H 0.059 0.941 15 C -0.550 4.550 16 H 0.080 0.920 17 C -0.139 4.139 18 N -0.528 5.528 19 Si 0.720 3.280 20 H -0.196 1.196 21 H -0.210 1.210 22 H -0.211 1.211 23 C -0.080 4.080 24 H 0.083 0.917 25 H 0.085 0.915 26 H 0.074 0.926 27 H 0.135 0.865 28 H 0.133 0.867 29 H 0.135 0.865 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.818 12.463 -1.122 13.800 hybrid contribution -0.194 -0.874 -0.449 1.002 sum -6.012 11.589 -1.572 13.150 Atomic orbital electron populations 1.20645 0.91813 1.02157 1.01785 1.18768 0.94906 0.90235 1.06574 1.20514 0.94100 0.95883 1.02894 1.20474 0.93913 0.97461 1.05499 1.20280 0.99341 0.90698 0.99235 1.18795 0.91627 0.92520 1.05479 1.21487 0.97147 0.90002 1.11773 1.22377 0.84895 0.97493 1.00333 1.41320 1.07796 1.03332 1.66199 0.75955 1.17902 0.93462 0.84192 1.05211 1.21262 1.00346 0.82970 1.01921 1.19401 0.89189 0.90106 0.97065 0.94144 1.21164 1.17643 0.90355 1.25852 0.91953 1.25016 0.95089 0.98791 0.95029 1.69969 1.28861 1.18328 1.35692 0.86522 0.79908 0.81900 0.79631 1.19617 1.20980 1.21055 1.20773 0.92595 0.94178 1.00436 0.91689 0.91549 0.92591 0.86492 0.86668 0.86452 0.90857 0.91501 0.92942 0.93233 0.91812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 10.02 36.01 0.36 -0.83 16 2 C -0.10 -1.50 5.90 -104.46 -0.62 -2.12 16 3 C -0.11 -1.56 9.67 -39.54 -0.38 -1.94 16 4 C -0.15 -2.17 9.97 -39.94 -0.40 -2.57 16 5 C -0.08 -1.27 10.05 -39.65 -0.40 -1.67 16 6 C -0.08 -1.52 6.37 -105.10 -0.67 -2.19 16 7 C -0.20 -4.21 7.14 -102.35 -0.73 -4.94 16 8 C 0.06 1.16 7.98 -81.03 -0.65 0.52 16 9 N -0.58 -10.32 6.08 -6.60 -0.04 -10.36 16 10 H 0.41 5.88 8.87 -40.82 -0.36 5.51 16 11 C 0.10 1.76 6.95 -84.10 -0.58 1.18 16 12 C -0.03 -0.60 5.58 -26.68 -0.15 -0.75 16 13 C 0.06 1.51 2.98 -90.29 -0.27 1.24 16 14 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 15 C -0.51 -13.58 8.40 -34.44 -0.29 -13.87 16 16 H 0.06 1.63 7.63 -52.49 -0.40 1.23 16 17 C 0.06 1.68 5.36 -17.82 -0.10 1.58 16 18 N -0.89 -24.67 12.59 55.43 0.70 -23.97 16 19 Si 0.89 20.65 29.54 -169.99 -5.02 15.63 16 20 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 23 C -0.04 -0.92 6.34 -26.81 -0.17 -1.09 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 26 H 0.06 0.60 7.99 -51.93 -0.42 0.18 16 27 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 28 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 29 H 0.12 1.75 8.06 -52.49 -0.42 1.32 16 30 H 0.07 1.75 7.89 -51.93 -0.41 1.34 16 31 H 0.07 1.59 8.03 -51.93 -0.42 1.17 16 32 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 33 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.06 1.39 7.77 -51.93 -0.40 0.98 16 LS Contribution 285.41 15.07 4.30 4.30 Total: -1.00 -28.69 285.41 -9.60 -38.29 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -4.50 Total: 3.57 kcal Atomic # 6 Polarization: -22.41 SS G_CDS: -5.04 Total: -27.44 kcal Atomic # 7 Polarization: -35.00 SS G_CDS: 0.66 Total: -34.34 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -28.69 -9.60 -38.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259821289.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.346 kcal (2) G-P(sol) polarization free energy of solvation -28.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds