Wall clock time and date at job start Mon Mar 30 2020 05:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.48583 * 111.00030 * 2 1 4 4 C 1.55068 * 103.30854 * 200.59079 * 3 2 1 5 5 C 1.54031 * 102.77678 * 36.92381 * 4 3 2 6 6 C 1.48052 * 110.99901 * 242.57528 * 2 1 3 7 7 C 1.52446 * 110.33064 * 218.76809 * 5 4 3 8 8 C 1.52692 * 110.04669 * 176.75744 * 7 5 4 9 9 H 1.08999 * 109.22917 * 309.39262 * 8 7 5 10 10 C 1.50700 * 109.22352 * 190.03655 * 8 7 5 11 11 H 1.07992 * 120.00079 * 0.02562 * 10 8 7 12 12 C 1.37877 * 120.00010 * 179.97438 * 10 8 7 13 13 N 1.31516 * 120.00117 * 180.02562 * 12 10 8 14 14 Si 1.86803 * 119.99950 * 0.02562 * 12 10 8 15 15 H 1.48508 * 109.46673 * 90.00149 * 14 12 10 16 16 H 1.48497 * 109.47306 * 209.99560 * 14 12 10 17 17 H 1.48491 * 109.47145 * 330.00289 * 14 12 10 18 18 C 1.52575 * 110.73781 * 69.71807 * 8 7 5 19 19 C 1.53130 * 110.05166 * 288.98672 * 18 8 7 20 20 S 1.81283 * 109.91077 * 97.29722 * 5 4 3 21 21 H 1.08994 * 109.47476 * 177.42582 * 1 2 3 22 22 H 1.09002 * 109.47321 * 297.42566 * 1 2 3 23 23 H 1.09002 * 109.46695 * 57.42089 * 1 2 3 24 24 H 1.08990 * 110.65591 * 319.04763 * 3 2 1 25 25 H 1.09010 * 110.65273 * 81.97311 * 3 2 1 26 26 H 1.09000 * 110.74872 * 278.60086 * 4 3 2 27 27 H 1.09002 * 110.74933 * 155.25043 * 4 3 2 28 28 H 1.08997 * 109.98952 * 26.42706 * 6 2 1 29 29 H 1.09004 * 109.98811 * 265.11372 * 6 2 1 30 30 H 1.09001 * 109.37438 * 296.93341 * 7 5 4 31 31 H 1.09004 * 109.37756 * 56.58372 * 7 5 4 32 32 H 0.96996 * 119.99953 * 179.97438 * 13 12 10 33 33 H 1.08999 * 109.37436 * 168.81132 * 18 8 7 34 34 H 1.09001 * 109.37537 * 49.16102 * 18 8 7 35 35 H 1.09001 * 109.59920 * 303.62002 * 19 18 8 36 36 H 1.09005 * 109.59456 * 183.16494 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0015 1.3871 0.0000 4 6 3.4482 1.2141 -0.5307 5 6 3.2925 0.1061 -1.5893 6 6 1.9996 -0.6366 -1.2269 7 6 4.4864 -0.8408 -1.5444 8 6 4.2876 -1.9813 -2.5401 9 1 3.3037 -2.4246 -2.3863 10 6 5.3449 -3.0303 -2.3105 11 1 6.0812 -2.8936 -1.5325 12 6 5.3715 -4.1651 -3.0932 13 7 6.2939 -5.0808 -2.8926 14 14 4.0973 -4.4019 -4.4385 15 1 4.6018 -3.8162 -5.7066 16 1 3.8432 -5.8524 -4.6300 17 1 2.8343 -3.7252 -4.0487 18 6 4.3898 -1.4705 -3.9741 19 6 3.1635 -0.6200 -4.3172 20 16 3.1483 0.8441 -3.2388 21 1 -0.3634 -1.0265 -0.0462 22 1 -0.3634 0.4733 0.9122 23 1 -0.3633 0.5534 -0.8660 24 1 1.4202 2.0221 -0.6684 25 1 2.0063 1.7971 1.0101 26 1 4.1169 0.8938 0.2682 27 1 3.8050 2.1373 -0.9874 28 1 1.2767 -0.5436 -2.0373 29 1 2.2146 -1.6884 -1.0378 30 1 5.3930 -0.2921 -1.7995 31 1 4.5848 -1.2513 -0.5394 32 1 6.3123 -5.8793 -3.4429 33 1 4.4444 -2.3183 -4.6570 34 1 5.2903 -0.8653 -4.0791 35 1 2.2570 -1.2032 -4.1547 36 1 3.2166 -0.3058 -5.3596 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259871265.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:17 Heat of formation + Delta-G solvation = -16.896924 kcal Electronic energy + Delta-G solvation = -16332.893844 eV Core-core repulsion = 13941.974090 eV Total energy + Delta-G solvation = -2390.919755 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 241.120 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.44529 -37.78748 -34.43643 -33.56184 -30.89598 -29.86566 -27.62267 -25.63792 -24.36133 -22.66198 -21.87210 -20.55532 -18.94365 -17.93223 -17.01012 -16.52359 -16.33959 -15.31597 -15.09468 -15.02216 -14.73419 -14.59428 -14.05747 -13.90699 -13.75555 -13.44063 -13.11450 -12.77537 -12.52717 -12.36153 -12.19516 -12.00084 -11.94653 -11.77093 -11.63186 -11.26565 -11.00834 -10.67235 -10.50055 -9.47358 -8.59678 -8.32280 -6.36539 0.80719 1.25397 1.32015 1.40340 1.51016 2.28386 3.01297 3.12391 3.44077 3.58651 3.93424 3.97652 4.07375 4.23998 4.29385 4.35830 4.45179 4.48502 4.57815 4.66156 4.71157 4.73096 4.86945 4.89811 4.98151 5.03611 5.06253 5.10940 5.13749 5.41417 5.61732 5.64586 5.82061 6.06661 6.26854 6.70383 7.28341 8.84306 Molecular weight = 241.12amu Principal moments of inertia in cm(-1) A = 0.029729 B = 0.008603 C = 0.008187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.626218 B = 3253.964974 C = 3419.220954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.532 5.532 3 C 0.041 3.959 4 C -0.096 4.096 5 C -0.026 4.026 6 C 0.051 3.949 7 C -0.077 4.077 8 C 0.012 3.988 9 H 0.026 0.974 10 C -0.517 4.517 11 H 0.033 0.967 12 C 0.011 3.989 13 N -0.949 5.949 14 Si 0.947 3.053 15 H -0.263 1.263 16 H -0.301 1.301 17 H -0.244 1.244 18 C -0.121 4.121 19 C -0.081 4.081 20 S -0.257 6.257 21 H 0.066 0.934 22 H 0.086 0.914 23 H 0.032 0.968 24 H 0.053 0.947 25 H 0.102 0.898 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.265 0.735 33 H 0.047 0.953 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.875 13.437 1.345 17.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.256 5.256 3 C -0.086 4.086 4 C -0.135 4.135 5 C -0.137 4.137 6 C -0.079 4.079 7 C -0.116 4.116 8 C -0.007 4.007 9 H 0.044 0.956 10 C -0.555 4.555 11 H 0.052 0.948 12 C -0.186 4.186 13 N -0.589 5.589 14 Si 0.774 3.226 15 H -0.190 1.190 16 H -0.229 1.229 17 H -0.168 1.168 18 C -0.159 4.159 19 C -0.229 4.229 20 S -0.029 6.029 21 H 0.085 0.915 22 H 0.105 0.895 23 H 0.051 0.949 24 H 0.071 0.929 25 H 0.120 0.880 26 H 0.107 0.893 27 H 0.106 0.894 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -11.751 14.094 1.456 18.408 hybrid contribution -0.061 -1.757 -1.069 2.058 sum -11.813 12.337 0.387 17.085 Atomic orbital electron populations 1.22563 0.86584 1.02309 1.01787 1.64841 1.09441 1.15630 1.35700 1.23310 0.93853 0.89424 1.02051 1.22429 0.98205 0.96755 0.96160 1.23260 0.98024 0.98592 0.93804 1.23172 0.93923 0.98916 0.91892 1.21445 0.95638 0.94885 0.99636 1.19080 0.96177 0.93559 0.91910 0.95610 1.21309 1.13603 1.03286 1.17271 0.94837 1.25904 0.97409 0.95396 0.99876 1.70048 1.36281 1.10613 1.41941 0.85878 0.80969 0.75965 0.79836 1.18951 1.22894 1.16770 1.22074 0.97078 0.98169 0.98626 1.23546 1.01123 0.96601 1.01588 1.86214 1.96919 1.16413 1.03395 0.91537 0.89524 0.94929 0.92885 0.88024 0.89332 0.89355 0.92880 0.91279 0.92210 0.92347 0.92568 0.93531 0.91485 0.90217 0.86547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.40 127.69 1.20 1.54 16 2 N -0.53 -14.10 5.56 -909.44 -5.06 -19.16 16 3 C 0.04 0.92 6.57 86.69 0.57 1.49 16 4 C -0.10 -2.48 6.16 31.65 0.20 -2.29 16 5 C -0.03 -0.83 0.72 -10.48 -0.01 -0.84 16 6 C 0.05 1.58 5.36 86.23 0.46 2.04 16 7 C -0.08 -2.99 3.59 30.31 0.11 -2.89 16 8 C 0.01 0.52 1.34 -11.78 -0.02 0.50 16 9 H 0.03 1.19 5.34 -2.39 -0.01 1.17 16 10 C -0.52 -29.18 9.11 25.60 0.23 -28.94 16 11 H 0.03 2.10 7.98 -2.91 -0.02 2.08 16 12 C 0.01 0.64 5.45 84.65 0.46 1.10 16 13 N -0.95 -59.34 13.96 21.45 0.30 -59.04 16 14 Si 0.95 44.24 24.38 68.60 1.67 45.92 16 15 H -0.26 -11.62 6.79 99.48 0.68 -10.94 16 16 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 17 H -0.24 -10.43 6.52 99.48 0.65 -9.78 16 18 C -0.12 -4.89 4.42 30.50 0.13 -4.76 16 19 C -0.08 -2.62 6.38 72.03 0.46 -2.16 16 20 S -0.26 -7.90 20.63 -56.49 -1.17 -9.07 16 21 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 22 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 23 H 0.03 0.65 8.01 -2.39 -0.02 0.63 16 24 H 0.05 1.14 7.96 -2.39 -0.02 1.12 16 25 H 0.10 1.89 8.14 -2.38 -0.02 1.87 16 26 H 0.09 2.29 7.84 -2.39 -0.02 2.27 16 27 H 0.09 2.10 7.77 -2.39 -0.02 2.08 16 28 H 0.05 1.61 7.19 -2.39 -0.02 1.59 16 29 H 0.07 2.50 6.38 -2.39 -0.02 2.49 16 30 H 0.06 2.37 8.07 -2.39 -0.02 2.35 16 31 H 0.06 2.40 8.07 -2.38 -0.02 2.38 16 32 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 33 H 0.05 2.01 3.05 -2.39 -0.01 2.00 16 34 H 0.07 2.74 8.07 -2.39 -0.02 2.72 16 35 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 36 H 0.12 3.24 8.14 -2.39 -0.02 3.22 16 Total: -1.00 -63.11 278.20 0.51 -62.60 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: 0.95 Total: 13.94 kcal Atomic # 6 Polarization: -39.00 SS G_CDS: 3.80 Total: -35.20 kcal Atomic # 7 Polarization: -73.44 SS G_CDS: -4.76 Total: -78.20 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 1.67 Total: 45.92 kcal Atomic # 16 Polarization: -7.90 SS G_CDS: -1.17 Total: -9.07 kcal Total: -63.11 0.51 -62.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259871265.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.706 kcal (2) G-P(sol) polarization free energy of solvation -63.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds