Wall clock time and date at job start Mon Mar 30 2020 05:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.37973 * 119.92261 * 2 1 4 4 C 1.39611 * 119.84069 * 180.02562 * 3 2 1 5 5 C 1.43201 * 120.14522 * 179.97438 * 4 3 2 6 6 N 4.80125 * 134.70170 * 359.97438 * 2 1 3 7 7 C 1.39654 * 119.70337 * 0.02562 * 4 3 2 8 8 C 1.37924 * 119.84227 * 0.02562 * 7 4 3 9 9 C 1.50702 * 119.92106 * 179.97438 * 8 7 4 10 10 C 1.50694 * 115.55038 * 220.21638 * 9 8 7 11 11 H 1.08008 * 119.99985 * 264.53224 * 10 9 8 12 12 C 1.37874 * 120.00140 * 84.52977 * 10 9 8 13 13 N 1.31524 * 120.00212 * 174.89001 * 12 10 9 14 14 Si 1.86796 * 119.99960 * 354.89306 * 12 10 9 15 15 H 1.48497 * 109.47548 * 92.93135 * 14 12 10 16 16 H 1.48502 * 109.47175 * 212.92688 * 14 12 10 17 17 H 1.48501 * 109.47199 * 332.92884 * 14 12 10 18 18 C 1.53005 * 117.50021 * 74.50851 * 9 8 7 19 19 C 1.52997 * 59.99861 * 252.50930 * 18 9 8 20 20 C 1.38333 * 119.92420 * 179.73399 * 2 1 3 21 21 C 1.50704 * 119.84626 * 359.97438 * 20 2 1 22 22 H 1.08993 * 109.47015 * 89.99507 * 1 2 3 23 23 H 1.08991 * 109.46960 * 209.99960 * 1 2 3 24 24 H 1.09005 * 109.46809 * 329.99317 * 1 2 3 25 25 H 1.08001 * 120.07910 * 0.02742 * 3 2 1 26 26 H 1.07997 * 120.07425 * 180.02562 * 7 4 3 27 27 H 0.97002 * 119.99812 * 180.02562 * 13 12 10 28 28 H 1.08999 * 117.49989 * 359.97438 * 18 9 8 29 29 H 1.08993 * 117.49723 * 145.02029 * 18 9 8 30 30 H 1.09000 * 117.50536 * 252.50507 * 19 18 9 31 31 H 1.09007 * 117.49990 * 107.49241 * 19 18 9 32 32 H 1.09000 * 109.46949 * 96.47136 * 21 20 2 33 33 H 1.09005 * 109.47342 * 216.47049 * 21 20 2 34 34 H 1.08991 * 109.47544 * 336.47384 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1953 1.1958 0.0000 4 6 3.5914 1.1938 -0.0005 5 6 4.3123 2.4311 -0.0011 6 7 4.8843 3.4126 -0.0015 7 6 4.2817 -0.0202 -0.0016 8 6 3.5809 -1.2082 -0.0027 9 6 4.3240 -2.5193 -0.0044 10 6 3.7409 -3.5956 -0.8833 11 1 3.0744 -4.3341 -0.4626 12 6 4.0582 -3.6377 -2.2243 13 7 3.6313 -4.6333 -2.9702 14 14 5.0946 -2.2808 -2.9819 15 1 6.5261 -2.6743 -2.9491 16 1 4.6733 -2.0633 -4.3892 17 1 4.9083 -1.0260 -2.2099 18 6 4.9882 -2.9566 1.3027 19 6 5.8468 -2.4684 0.1342 20 6 2.1971 -1.1989 0.0056 21 6 1.4384 -2.5010 0.0122 22 1 -0.3633 0.0001 -1.0276 23 1 -0.3633 -0.8899 0.5138 24 1 -0.3633 0.8900 0.5140 25 1 1.6553 2.1311 0.0004 26 1 5.3616 -0.0287 -0.0016 27 1 3.8548 -4.6631 -3.9136 28 1 4.8881 -2.2959 2.1638 29 1 5.0034 -4.0231 1.5272 30 1 6.4270 -3.2136 -0.4099 31 1 6.3113 -1.4866 0.2267 32 1 1.3552 -2.8782 -1.0071 33 1 1.9697 -3.2281 0.6264 34 1 0.4416 -2.3386 0.4220 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260185386.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:48 Heat of formation + Delta-G solvation = 72.507538 kcal Electronic energy + Delta-G solvation = -16951.920049 eV Core-core repulsion = 14429.433211 eV Total energy + Delta-G solvation = -2522.486838 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 241.116 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.75123 -36.86473 -36.09581 -33.10778 -32.12693 -31.26250 -27.47620 -26.41864 -25.88076 -22.37025 -21.97231 -21.27748 -18.99312 -17.77201 -16.50801 -15.35426 -15.08586 -14.77125 -14.21139 -13.98369 -13.39171 -13.29743 -13.02870 -12.75804 -12.63183 -12.52574 -12.26355 -11.97923 -11.48652 -11.29781 -11.18279 -10.92933 -10.66737 -10.63901 -10.40538 -10.05301 -9.70297 -9.49704 -8.82469 -8.62988 -8.13322 -7.80020 -6.19539 -4.22230 1.21785 1.77258 2.87891 3.25554 3.27065 3.38269 3.46258 4.18143 4.20425 4.39105 4.89883 5.03497 5.15665 5.23199 5.40717 5.57639 5.66928 5.75027 5.81855 5.92422 6.01107 6.05022 6.25829 6.32177 6.35717 6.41563 6.59305 6.62823 6.68657 6.79772 6.86207 7.02067 7.11932 7.28434 7.48856 7.62909 7.71449 8.37047 8.79844 9.43095 10.90129 Molecular weight = 241.12amu Principal moments of inertia in cm(-1) A = 0.019281 B = 0.010629 C = 0.008961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.855006 B = 2633.677027 C = 3123.762327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.103 4.103 3 C -0.085 4.085 4 C -0.055 4.055 5 C 0.271 3.729 6 N -0.447 5.447 7 C -0.080 4.080 8 C -0.022 4.022 9 C 0.031 3.969 10 C -0.483 4.483 11 H 0.087 0.913 12 C 0.084 3.916 13 N -0.892 5.892 14 Si 0.861 3.139 15 H -0.279 1.279 16 H -0.294 1.294 17 H -0.246 1.246 18 C -0.167 4.167 19 C -0.200 4.200 20 C -0.021 4.021 21 C -0.107 4.107 22 H 0.068 0.932 23 H 0.074 0.926 24 H 0.059 0.941 25 H 0.121 0.879 26 H 0.124 0.876 27 H 0.266 0.734 28 H 0.074 0.926 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.332 5.938 6.066 9.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.103 4.103 3 C -0.106 4.106 4 C -0.058 4.058 5 C -0.044 4.044 6 N -0.123 5.123 7 C -0.100 4.100 8 C -0.023 4.023 9 C 0.030 3.970 10 C -0.520 4.520 11 H 0.105 0.895 12 C -0.119 4.119 13 N -0.529 5.529 14 Si 0.689 3.311 15 H -0.205 1.205 16 H -0.220 1.220 17 H -0.170 1.170 18 C -0.204 4.204 19 C -0.237 4.237 20 C -0.022 4.022 21 C -0.163 4.163 22 H 0.087 0.913 23 H 0.093 0.907 24 H 0.078 0.922 25 H 0.139 0.861 26 H 0.142 0.858 27 H 0.075 0.925 28 H 0.093 0.907 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.093 0.907 32 H 0.109 0.891 33 H 0.100 0.900 34 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.453 7.379 5.871 10.042 hybrid contribution 0.618 0.416 -0.756 1.061 sum -2.835 7.795 5.115 9.745 Atomic orbital electron populations 1.20814 0.91132 1.02576 1.02344 1.19614 0.96009 0.92154 1.02513 1.20754 0.91513 0.97886 1.00440 1.15876 0.92278 0.86579 1.11068 1.25910 0.92938 0.92804 0.92709 1.81167 1.09080 1.11407 1.10609 1.21122 0.99939 0.90509 0.98471 1.19686 0.93077 0.94058 0.95449 1.18216 0.89679 0.91760 0.97379 1.20246 1.29645 1.09904 0.92170 0.89539 1.24895 0.95077 0.94946 0.97002 1.69880 1.45617 1.30333 1.07052 0.87046 0.80800 0.84648 0.78648 1.20497 1.22040 1.16986 1.22855 1.05565 1.00691 0.91318 1.23076 0.95758 1.01012 1.03885 1.19883 0.93169 0.95060 0.94062 1.21069 0.96909 0.93917 1.04380 0.91281 0.90721 0.92151 0.86053 0.85828 0.92466 0.90738 0.89085 0.89063 0.90735 0.89121 0.90029 0.93629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.31 9.59 36.01 0.35 -0.97 16 2 C -0.10 -1.55 5.87 -104.68 -0.61 -2.17 16 3 C -0.09 -1.26 9.41 -39.17 -0.37 -1.63 16 4 C -0.05 -0.90 5.73 -106.93 -0.61 -1.51 16 5 C 0.27 4.53 15.33 -22.47 -0.34 4.18 16 6 N -0.45 -8.00 18.54 41.84 0.78 -7.22 16 7 C -0.08 -1.44 7.76 -39.17 -0.30 -1.74 16 8 C -0.02 -0.42 4.35 -104.68 -0.46 -0.88 16 9 C 0.03 0.63 0.68 -156.81 -0.11 0.52 16 10 C -0.48 -11.71 6.40 -34.44 -0.22 -11.94 16 11 H 0.09 2.24 6.86 -52.48 -0.36 1.88 16 12 C 0.08 2.20 5.47 -17.82 -0.10 2.11 16 13 N -0.89 -25.07 13.96 55.43 0.77 -24.30 16 14 Si 0.86 20.41 25.66 -169.99 -4.36 16.05 16 15 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 16 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 17 H -0.25 -5.53 4.97 56.52 0.28 -5.25 16 18 C -0.17 -3.05 9.94 -26.73 -0.27 -3.32 16 19 C -0.20 -3.89 7.48 -26.73 -0.20 -4.09 16 20 C -0.02 -0.37 5.83 -104.53 -0.61 -0.98 16 21 C -0.11 -1.84 7.79 36.01 0.28 -1.56 16 22 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.07 0.83 5.85 -51.93 -0.30 0.52 16 24 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 25 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 26 H 0.12 2.16 5.96 -52.49 -0.31 1.84 16 27 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 28 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 30 H 0.09 1.88 7.70 -51.93 -0.40 1.48 16 31 H 0.07 1.32 6.12 -51.93 -0.32 1.00 16 32 H 0.09 1.79 7.44 -51.93 -0.39 1.41 16 33 H 0.08 1.49 6.04 -51.93 -0.31 1.18 16 34 H 0.05 0.64 5.69 -51.93 -0.30 0.34 16 LS Contribution 279.51 15.07 4.21 4.21 Total: -1.00 -27.16 279.51 -6.23 -33.39 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -4.06 Total: 1.83 kcal Atomic # 6 Polarization: -20.39 SS G_CDS: -3.57 Total: -23.97 kcal Atomic # 7 Polarization: -33.07 SS G_CDS: 1.55 Total: -31.52 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -4.36 Total: 16.05 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -27.16 -6.23 -33.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260185386.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.900 kcal (2) G-P(sol) polarization free energy of solvation -27.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds