Wall clock time and date at job start Mon Mar 30 2020 05:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37975 * 120.07372 * 2 1 4 4 C 1.38342 * 120.14653 * 180.25266 * 3 2 1 5 5 C 1.50700 * 119.84351 * 179.76680 * 4 3 2 6 6 C 1.38381 * 120.30785 * 359.48726 * 4 3 2 7 7 C 1.50700 * 119.92506 * 180.25504 * 6 4 3 8 8 C 1.50710 * 115.54986 * 280.48918 * 7 6 4 9 9 H 1.07993 * 119.99860 * 144.39549 * 8 7 6 10 10 C 1.37870 * 119.99813 * 324.39465 * 8 7 6 11 11 N 1.31519 * 120.00297 * 351.34479 * 10 8 7 12 12 Si 1.86799 * 120.00077 * 171.34508 * 10 8 7 13 13 H 1.48504 * 109.47093 * 90.00128 * 12 10 8 14 14 H 1.48501 * 109.47296 * 209.99910 * 12 10 8 15 15 H 1.48497 * 109.47039 * 330.00027 * 12 10 8 16 16 C 1.52999 * 117.49914 * 134.78073 * 7 6 4 17 17 C 1.52996 * 117.50040 * 66.15795 * 7 6 4 18 18 C 1.37930 * 120.15101 * 0.23372 * 6 4 3 19 19 C 1.39612 * 120.08288 * 179.72209 * 2 1 3 20 20 C 1.43206 * 120.14464 * 359.97438 * 19 2 1 21 21 N 3.48496 * 80.49770 * 179.70887 * 2 1 3 22 22 H 1.08996 * 109.47150 * 270.27601 * 1 2 3 23 23 H 1.09001 * 109.47296 * 30.27703 * 1 2 3 24 24 H 1.08999 * 109.46748 * 150.27633 * 1 2 3 25 25 H 1.07994 * 119.92557 * 0.02562 * 3 2 1 26 26 H 1.08997 * 109.47340 * 263.72897 * 5 4 3 27 27 H 1.09000 * 109.47687 * 23.73210 * 5 4 3 28 28 H 1.09002 * 109.47111 * 143.73337 * 5 4 3 29 29 H 0.96996 * 120.00341 * 185.00438 * 11 10 8 30 30 H 1.08998 * 117.50213 * 0.02562 * 16 7 6 31 31 H 1.09004 * 117.49436 * 145.01954 * 16 7 6 32 32 H 1.09007 * 117.50079 * 214.98067 * 17 7 6 33 33 H 1.08998 * 117.49649 * 359.97438 * 17 7 6 34 34 H 1.07994 * 120.07348 * 179.97438 * 18 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1940 0.0000 4 6 3.5818 1.1958 -0.0053 5 6 4.3301 2.5039 -0.0106 6 6 4.2817 0.0020 0.0001 7 6 5.7886 0.0140 0.0001 8 6 6.4367 0.2607 -1.3380 9 1 7.3511 0.8322 -1.3979 10 6 5.8621 -0.2431 -2.4855 11 7 4.8493 -1.0779 -2.4020 12 14 6.5222 0.2599 -4.1590 13 1 7.5888 -0.6860 -4.5752 14 1 5.4205 0.2325 -5.1544 15 1 7.0822 1.6329 -4.0780 16 6 6.5027 -0.9319 0.9677 17 6 6.4907 0.5738 1.2389 18 6 3.6032 -1.1989 0.0059 19 6 2.2068 -1.2080 0.0059 20 6 1.4957 -2.4511 0.0124 21 7 0.9317 -3.4371 0.0175 22 1 -0.3633 0.0050 1.0276 23 1 -0.3634 0.8875 -0.5181 24 1 -0.3633 -0.8925 -0.5095 25 1 1.6584 2.1293 0.0004 26 1 4.6040 2.7617 -1.0336 27 1 3.6955 3.2872 0.4040 28 1 5.2320 2.4090 0.5941 29 1 4.4919 -1.4887 -3.2047 30 1 5.8825 -1.5633 1.6040 31 1 7.4413 -1.3762 0.6364 32 1 7.4215 1.1202 1.0862 33 1 5.8625 0.9337 2.0537 34 1 4.1506 -2.1297 0.0097 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260295845.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:08 Heat of formation + Delta-G solvation = 64.231834 kcal Electronic energy + Delta-G solvation = -16967.640674 eV Core-core repulsion = 14444.794975 eV Total energy + Delta-G solvation = -2522.845699 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 241.116 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.29196 -36.67145 -35.49895 -32.41411 -32.22325 -31.23175 -26.89643 -26.67130 -25.57119 -22.10948 -21.10060 -20.89142 -19.74657 -17.65237 -15.83842 -15.14119 -14.69170 -14.38155 -13.95369 -13.80360 -13.41330 -12.99424 -12.69168 -12.57055 -12.39655 -12.28368 -12.01437 -11.83314 -11.30555 -11.17972 -11.01822 -10.84214 -10.60994 -10.54800 -10.38048 -10.33210 -9.48854 -9.33485 -8.85718 -8.33270 -7.91870 -7.55177 -6.06441 -4.18785 1.62196 2.28028 3.21751 3.25749 3.31406 3.32713 3.65661 4.29970 4.57357 4.71113 4.89569 5.33326 5.37201 5.45199 5.74671 5.77900 5.87479 5.97879 6.03575 6.18584 6.24624 6.31773 6.41142 6.52949 6.57532 6.63776 6.70124 6.83615 6.89865 7.07708 7.12870 7.22717 7.32037 7.68547 7.71437 7.83192 8.10145 8.24058 8.77343 9.40970 10.88422 Molecular weight = 241.12amu Principal moments of inertia in cm(-1) A = 0.019647 B = 0.009570 C = 0.008788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.845642 B = 2925.103875 C = 3185.250066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.061 4.061 3 C -0.139 4.139 4 C -0.050 4.050 5 C -0.110 4.110 6 C 0.016 3.984 7 C 0.084 3.916 8 C -0.490 4.490 9 H 0.064 0.936 10 C 0.076 3.924 11 N -0.868 5.868 12 Si 0.890 3.110 13 H -0.281 1.281 14 H -0.285 1.285 15 H -0.272 1.272 16 C -0.205 4.205 17 C -0.203 4.203 18 C 0.011 3.989 19 C -0.068 4.068 20 C 0.281 3.719 21 N -0.462 5.462 22 H 0.066 0.934 23 H 0.066 0.934 24 H 0.057 0.943 25 H 0.116 0.884 26 H 0.073 0.927 27 H 0.046 0.954 28 H 0.076 0.924 29 H 0.264 0.736 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.269 5.601 4.573 7.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.064 4.064 3 C -0.158 4.158 4 C -0.051 4.051 5 C -0.166 4.166 6 C 0.016 3.984 7 C 0.084 3.916 8 C -0.527 4.527 9 H 0.083 0.917 10 C -0.129 4.129 11 N -0.503 5.503 12 Si 0.717 3.283 13 H -0.207 1.207 14 H -0.211 1.211 15 H -0.197 1.197 16 C -0.243 4.243 17 C -0.240 4.240 18 C -0.010 4.010 19 C -0.072 4.072 20 C -0.032 4.032 21 N -0.139 5.139 22 H 0.084 0.916 23 H 0.085 0.915 24 H 0.076 0.924 25 H 0.134 0.866 26 H 0.091 0.909 27 H 0.065 0.935 28 H 0.095 0.905 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.329 4.005 4.438 7.381 hybrid contribution 0.609 0.392 -1.175 1.380 sum -3.720 4.396 3.263 6.620 Atomic orbital electron populations 1.20750 0.91994 1.02277 1.01784 1.19493 0.94796 0.91805 1.00304 1.20524 0.93504 0.96290 1.05436 1.19831 0.92784 0.95602 0.96889 1.20793 0.99909 0.92917 1.02993 1.18901 0.94855 0.90735 0.93956 1.17679 0.86661 0.97429 0.89836 1.20411 1.08883 1.35032 0.88403 0.91740 1.24961 0.94289 0.94580 0.99070 1.69897 1.23927 1.27432 1.29041 0.86613 0.78554 0.79272 0.83829 1.20658 1.21067 1.19669 1.23097 1.03386 0.91467 1.06332 1.22935 1.02606 0.96760 1.01698 1.20730 0.90078 0.98994 0.91235 1.15832 0.92596 0.85778 1.12959 1.25904 0.92341 0.92779 0.92213 1.81110 1.10088 1.11266 1.11423 0.91570 0.91494 0.92389 0.86605 0.90886 0.93466 0.90483 0.92563 0.91495 0.90131 0.90253 0.91038 0.85962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.56 9.61 36.01 0.35 -1.21 16 2 C -0.06 -1.06 5.91 -104.21 -0.62 -1.68 16 3 C -0.14 -2.38 9.31 -39.64 -0.37 -2.75 16 4 C -0.05 -0.96 5.88 -104.53 -0.61 -1.57 16 5 C -0.11 -1.86 9.44 36.01 0.34 -1.52 16 6 C 0.02 0.34 3.72 -104.68 -0.39 -0.05 16 7 C 0.08 1.86 1.12 -156.81 -0.18 1.69 16 8 C -0.49 -12.06 8.99 -34.44 -0.31 -12.37 16 9 H 0.06 1.59 7.83 -52.49 -0.41 1.18 16 10 C 0.08 1.90 5.27 -17.82 -0.09 1.81 16 11 N -0.87 -22.39 10.35 55.43 0.57 -21.82 16 12 Si 0.89 19.87 29.55 -169.99 -5.02 14.85 16 13 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 14 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 15 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 16 C -0.20 -4.22 9.52 -26.73 -0.25 -4.48 16 17 C -0.20 -3.90 8.01 -26.73 -0.21 -4.11 16 18 C 0.01 0.22 7.15 -39.17 -0.28 -0.06 16 19 C -0.07 -1.32 5.73 -106.93 -0.61 -1.93 16 20 C 0.28 5.50 13.80 -22.47 -0.31 5.19 16 21 N -0.46 -9.39 18.54 41.84 0.78 -8.62 16 22 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 23 H 0.07 0.81 8.09 -51.93 -0.42 0.39 16 24 H 0.06 0.85 7.09 -51.93 -0.37 0.49 16 25 H 0.12 1.64 8.05 -52.49 -0.42 1.22 16 26 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 27 H 0.05 0.65 8.04 -51.93 -0.42 0.23 16 28 H 0.08 1.31 5.45 -51.93 -0.28 1.03 16 29 H 0.26 6.73 8.32 -40.82 -0.34 6.39 16 30 H 0.07 1.30 7.98 -51.93 -0.41 0.89 16 31 H 0.08 1.68 8.14 -51.93 -0.42 1.26 16 32 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 33 H 0.07 1.26 7.96 -51.93 -0.41 0.85 16 34 H 0.12 2.72 7.90 -52.49 -0.41 2.30 16 LS Contribution 292.49 15.07 4.41 4.41 Total: -1.00 -25.98 292.49 -7.21 -33.19 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -4.39 Total: 1.02 kcal Atomic # 6 Polarization: -19.49 SS G_CDS: -3.55 Total: -23.04 kcal Atomic # 7 Polarization: -31.79 SS G_CDS: 1.35 Total: -30.44 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.85 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -25.98 -7.21 -33.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260295845.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.427 kcal (2) G-P(sol) polarization free energy of solvation -25.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds