Wall clock time and date at job start Mon Mar 30 2020 05:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37975 * 120.07372 * 2 1 4 4 C 1.38342 * 120.14653 * 180.25266 * 3 2 1 5 5 C 1.50700 * 119.84351 * 179.76680 * 4 3 2 6 6 C 1.38381 * 120.30785 * 359.48726 * 4 3 2 7 7 C 1.50700 * 119.92506 * 180.25504 * 6 4 3 8 8 C 1.50710 * 115.54986 * 280.48918 * 7 6 4 9 9 H 1.07993 * 119.99860 * 144.39549 * 8 7 6 10 10 C 1.37870 * 119.99813 * 324.39465 * 8 7 6 11 11 N 1.31519 * 120.00297 * 351.34479 * 10 8 7 12 12 Si 1.86799 * 120.00077 * 171.34508 * 10 8 7 13 13 H 1.48504 * 109.47093 * 90.00128 * 12 10 8 14 14 H 1.48501 * 109.47296 * 209.99910 * 12 10 8 15 15 H 1.48497 * 109.47039 * 330.00027 * 12 10 8 16 16 C 1.52999 * 117.49914 * 134.78073 * 7 6 4 17 17 C 1.52996 * 117.50040 * 66.15795 * 7 6 4 18 18 C 1.37930 * 120.15101 * 0.23372 * 6 4 3 19 19 C 1.39612 * 120.08288 * 179.72209 * 2 1 3 20 20 C 1.43206 * 120.14464 * 359.97438 * 19 2 1 21 21 N 3.48496 * 80.49770 * 179.70887 * 2 1 3 22 22 H 1.08996 * 109.47150 * 270.27601 * 1 2 3 23 23 H 1.09001 * 109.47296 * 30.27703 * 1 2 3 24 24 H 1.08999 * 109.46748 * 150.27633 * 1 2 3 25 25 H 1.07994 * 119.92557 * 0.02562 * 3 2 1 26 26 H 1.08997 * 109.47340 * 263.72897 * 5 4 3 27 27 H 1.09000 * 109.47687 * 23.73210 * 5 4 3 28 28 H 1.09002 * 109.47111 * 143.73337 * 5 4 3 29 29 H 0.96996 * 120.00341 * 185.00438 * 11 10 8 30 30 H 1.08998 * 117.50213 * 0.02562 * 16 7 6 31 31 H 1.09004 * 117.49436 * 145.01954 * 16 7 6 32 32 H 1.09007 * 117.50079 * 214.98067 * 17 7 6 33 33 H 1.08998 * 117.49649 * 359.97438 * 17 7 6 34 34 H 1.07994 * 120.07348 * 179.97438 * 18 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1940 0.0000 4 6 3.5818 1.1958 -0.0053 5 6 4.3301 2.5039 -0.0106 6 6 4.2817 0.0020 0.0001 7 6 5.7886 0.0140 0.0001 8 6 6.4367 0.2607 -1.3380 9 1 7.3511 0.8322 -1.3979 10 6 5.8621 -0.2431 -2.4855 11 7 4.8493 -1.0779 -2.4020 12 14 6.5222 0.2599 -4.1590 13 1 7.5888 -0.6860 -4.5752 14 1 5.4205 0.2325 -5.1544 15 1 7.0822 1.6329 -4.0780 16 6 6.5027 -0.9319 0.9677 17 6 6.4907 0.5738 1.2389 18 6 3.6032 -1.1989 0.0059 19 6 2.2068 -1.2080 0.0059 20 6 1.4957 -2.4511 0.0124 21 7 0.9317 -3.4371 0.0175 22 1 -0.3633 0.0050 1.0276 23 1 -0.3634 0.8875 -0.5181 24 1 -0.3633 -0.8925 -0.5095 25 1 1.6584 2.1293 0.0004 26 1 4.6040 2.7617 -1.0336 27 1 3.6955 3.2872 0.4040 28 1 5.2320 2.4090 0.5941 29 1 4.4919 -1.4887 -3.2047 30 1 5.8825 -1.5633 1.6040 31 1 7.4413 -1.3762 0.6364 32 1 7.4215 1.1202 1.0862 33 1 5.8625 0.9337 2.0537 34 1 4.1506 -2.1297 0.0097 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260295845.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:08 Heat of formation + Delta-G solvation = 53.722970 kcal Electronic energy + Delta-G solvation = -16968.096373 eV Core-core repulsion = 14444.794975 eV Total energy + Delta-G solvation = -2523.301398 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 241.116 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.76765 -38.24763 -37.05734 -34.09949 -33.79945 -32.65538 -28.27811 -28.08398 -27.33128 -23.64540 -22.67731 -22.31848 -21.32294 -19.32711 -17.50253 -16.62372 -16.49253 -15.88981 -15.50271 -15.23386 -14.94693 -14.53722 -14.11931 -13.94767 -13.79171 -13.72687 -13.53609 -13.19648 -12.91805 -12.81727 -12.62619 -12.40740 -12.20092 -12.00819 -11.96536 -11.88308 -11.14762 -11.07566 -10.52612 -10.08790 -9.39208 -9.05710 -7.91213 -6.10485 0.12952 0.84453 1.42592 1.48089 1.54578 1.69856 2.11906 2.45789 3.02410 3.13362 3.22342 3.70123 4.04135 4.10761 4.26520 4.44336 4.62573 4.63259 4.77479 4.82329 4.85028 4.99700 5.02201 5.08987 5.10250 5.18971 5.21221 5.27857 5.51906 5.59866 5.63984 5.70765 5.73366 5.86521 6.19752 6.31205 6.44432 6.56177 6.88606 7.49961 8.97260 Molecular weight = 241.12amu Principal moments of inertia in cm(-1) A = 0.019647 B = 0.009570 C = 0.008788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.845642 B = 2925.103875 C = 3185.250066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.055 4.055 3 C -0.134 4.134 4 C -0.059 4.059 5 C -0.107 4.107 6 C -0.006 4.006 7 C 0.060 3.940 8 C -0.499 4.499 9 H 0.057 0.943 10 C 0.038 3.962 11 N -0.886 5.886 12 Si 0.937 3.063 13 H -0.284 1.284 14 H -0.290 1.290 15 H -0.265 1.265 16 C -0.212 4.212 17 C -0.176 4.176 18 C -0.005 4.005 19 C -0.081 4.081 20 C 0.291 3.709 21 N -0.481 5.481 22 H 0.086 0.914 23 H 0.093 0.907 24 H 0.046 0.954 25 H 0.155 0.845 26 H 0.059 0.941 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.256 0.744 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.403 7.667 5.131 10.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.057 4.057 3 C -0.151 4.151 4 C -0.060 4.060 5 C -0.163 4.163 6 C -0.006 4.006 7 C 0.060 3.940 8 C -0.536 4.536 9 H 0.075 0.925 10 C -0.165 4.165 11 N -0.522 5.522 12 Si 0.764 3.236 13 H -0.210 1.210 14 H -0.216 1.216 15 H -0.190 1.190 16 C -0.250 4.250 17 C -0.213 4.213 18 C -0.027 4.027 19 C -0.084 4.084 20 C -0.022 4.022 21 N -0.158 5.158 22 H 0.105 0.895 23 H 0.112 0.888 24 H 0.065 0.935 25 H 0.172 0.828 26 H 0.077 0.923 27 H 0.102 0.898 28 H 0.091 0.909 29 H 0.066 0.934 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.103 0.897 33 H 0.110 0.890 34 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -5.450 6.078 5.007 9.576 hybrid contribution 0.980 -0.238 -1.308 1.652 sum -4.469 5.839 3.698 8.231 Atomic orbital electron populations 1.20820 0.89319 1.03049 1.03357 1.19917 0.96705 0.90947 0.98141 1.20923 0.92812 0.97689 1.03726 1.20187 0.93980 0.95646 0.96138 1.20796 1.00314 0.92878 1.02289 1.18903 0.94397 0.91605 0.95736 1.17727 0.87662 0.99028 0.89578 1.20646 1.08650 1.34388 0.89930 0.92482 1.25486 0.94761 0.94832 1.01388 1.70063 1.24946 1.28358 1.28843 0.85868 0.77660 0.79080 0.80946 1.21039 1.21608 1.18953 1.23057 1.02834 0.92674 1.06391 1.22933 1.02460 0.95338 1.00576 1.20554 0.90878 0.98204 0.93015 1.15946 0.92044 0.86574 1.13870 1.25981 0.91897 0.92681 0.91656 1.81104 1.10866 1.11572 1.12248 0.89498 0.88846 0.93461 0.82751 0.92266 0.89839 0.90941 0.93408 0.90945 0.91195 0.89715 0.89041 0.88550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.67 9.61 71.24 0.68 -1.98 16 2 C -0.05 -1.75 5.91 -19.60 -0.12 -1.87 16 3 C -0.13 -4.11 9.31 22.23 0.21 -3.90 16 4 C -0.06 -2.11 5.88 -19.81 -0.12 -2.23 16 5 C -0.11 -3.32 9.44 71.24 0.67 -2.65 16 6 C -0.01 -0.25 3.72 -19.90 -0.07 -0.33 16 7 C 0.06 2.66 1.12 -53.67 -0.06 2.60 16 8 C -0.50 -24.67 8.99 25.60 0.23 -24.44 16 9 H 0.06 2.82 7.83 -2.91 -0.02 2.80 16 10 C 0.04 1.90 5.27 84.65 0.45 2.34 16 11 N -0.89 -46.58 10.35 21.45 0.22 -46.36 16 12 Si 0.94 41.02 29.55 68.60 2.03 43.05 16 13 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 14 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 15 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 16 C -0.21 -8.78 9.52 30.59 0.29 -8.49 16 17 C -0.18 -6.55 8.01 30.59 0.24 -6.30 16 18 C -0.01 -0.23 7.15 22.54 0.16 -0.07 16 19 C -0.08 -3.08 5.73 -21.36 -0.12 -3.20 16 20 C 0.29 11.34 13.80 88.33 1.22 12.56 16 21 N -0.48 -19.51 18.54 19.01 0.35 -19.16 16 22 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 23 H 0.09 1.82 8.09 -2.39 -0.02 1.80 16 24 H 0.05 1.27 7.09 -2.39 -0.02 1.26 16 25 H 0.15 3.53 8.05 -2.91 -0.02 3.50 16 26 H 0.06 2.01 8.14 -2.39 -0.02 2.00 16 27 H 0.08 1.95 8.04 -2.39 -0.02 1.93 16 28 H 0.07 2.30 5.45 -2.39 -0.01 2.29 16 29 H 0.26 13.39 8.32 -92.71 -0.77 12.62 16 30 H 0.07 2.87 7.98 -2.39 -0.02 2.85 16 31 H 0.07 2.98 8.14 -2.38 -0.02 2.96 16 32 H 0.08 3.04 8.14 -2.38 -0.02 3.02 16 33 H 0.09 3.02 7.96 -2.39 -0.02 3.00 16 34 H 0.10 4.51 7.90 -2.91 -0.02 4.49 16 Total: -1.00 -55.85 292.49 7.37 -48.48 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: 1.10 Total: 11.93 kcal Atomic # 6 Polarization: -41.62 SS G_CDS: 3.67 Total: -37.95 kcal Atomic # 7 Polarization: -66.09 SS G_CDS: 0.57 Total: -65.51 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 2.03 Total: 43.05 kcal Total: -55.85 7.37 -48.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260295845.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.208 kcal (2) G-P(sol) polarization free energy of solvation -55.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds