Wall clock time and date at job start Mon Mar 30 2020 05:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50705 * 109.47324 * 2 1 4 4 C 1.36197 * 120.66776 * 265.00045 * 3 2 1 5 5 N 1.32586 * 121.87351 * 180.02562 * 4 3 2 6 6 C 1.31259 * 122.77692 * 359.97438 * 5 4 3 7 7 C 1.40401 * 119.88449 * 359.97438 * 6 5 4 8 8 C 1.40382 * 122.08631 * 179.97438 * 7 6 5 9 9 C 1.36166 * 119.51177 * 180.30694 * 8 7 6 10 10 C 1.50705 * 119.45299 * 179.70084 * 9 8 7 11 11 C 1.50699 * 109.47129 * 89.99723 * 10 9 8 12 12 H 1.08004 * 120.00101 * 359.97438 * 11 10 9 13 13 C 1.37877 * 119.99987 * 180.02562 * 11 10 9 14 14 N 1.31518 * 120.00063 * 180.02562 * 13 11 10 15 15 Si 1.86803 * 119.99852 * 359.97438 * 13 11 10 16 16 H 1.48499 * 109.47101 * 90.00073 * 15 13 11 17 17 H 1.48501 * 109.46817 * 210.00077 * 15 13 11 18 18 H 1.48498 * 109.47148 * 330.00193 * 15 13 11 19 19 C 1.39373 * 121.09235 * 359.40003 * 9 8 7 20 20 C 1.36214 * 121.02609 * 0.62924 * 19 9 8 21 21 C 1.40233 * 119.47525 * 359.68274 * 20 19 9 22 22 H 1.08991 * 109.47328 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47071 * 299.99782 * 1 2 3 24 24 H 1.09002 * 109.47084 * 59.99089 * 1 2 3 25 25 H 1.09004 * 109.47071 * 240.00218 * 2 1 3 26 26 H 1.08998 * 109.47332 * 120.00459 * 2 1 3 27 27 H 1.07999 * 119.06897 * 0.02562 * 4 3 2 28 28 H 1.08006 * 120.05877 * 180.02562 * 6 5 4 29 29 H 1.08002 * 120.24037 * 0.02692 * 8 7 6 30 30 H 1.08997 * 109.47130 * 209.99874 * 10 9 8 31 31 H 1.09002 * 109.46830 * 329.99970 * 10 9 8 32 32 H 0.96996 * 119.99738 * 180.02562 * 14 13 11 33 33 H 1.08005 * 119.48854 * 180.29558 * 19 9 8 34 34 H 1.07995 * 120.26521 * 179.66733 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3602 2.0418 -1.1670 5 7 2.8048 3.2905 -1.1948 6 6 2.9600 4.0138 -0.1105 7 6 2.6493 3.4678 1.1451 8 6 2.7982 4.1993 2.3339 9 6 2.4870 3.6156 3.5241 10 6 2.6538 4.3999 4.8002 11 6 1.3750 5.1350 5.1088 12 1 0.5264 5.0438 4.4469 13 6 1.2886 5.9249 6.2356 14 7 0.1724 6.5660 6.5052 15 14 2.7565 6.0832 7.3800 16 1 3.6009 7.2255 6.9469 17 1 2.2799 6.3178 8.7668 18 1 3.5556 4.8324 7.3361 19 6 2.0109 2.3070 3.5813 20 6 1.8541 1.5668 2.4486 21 6 2.1706 2.1328 1.2052 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5140 -0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 2.2550 1.5016 -2.0963 28 1 3.3253 5.0276 -0.1841 29 1 3.1613 5.2161 2.3051 30 1 2.8874 3.7181 5.6178 31 1 3.4659 5.1174 4.6821 32 1 0.1118 7.1220 7.2977 33 1 1.7675 1.8712 4.5391 34 1 1.4893 0.5521 2.5077 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260412609.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:29 Heat of formation + Delta-G solvation = 13.255397 kcal Electronic energy + Delta-G solvation = -16222.421542 eV Core-core repulsion = 13697.365339 eV Total energy + Delta-G solvation = -2525.056203 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 241.116 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.84386 -38.67562 -36.11388 -35.17544 -33.11650 -32.23319 -30.46327 -29.27679 -25.66569 -25.02622 -24.30987 -22.62974 -21.64418 -18.99014 -18.76586 -17.95797 -17.32253 -16.30017 -15.82661 -15.44931 -15.25571 -14.99097 -14.87555 -14.54835 -14.20217 -13.88912 -13.52090 -13.44059 -13.02482 -12.93284 -12.60251 -12.40163 -12.27018 -11.90878 -11.85607 -11.69511 -11.51325 -10.80191 -10.73708 -10.36698 -9.79972 -8.79177 -8.30674 -6.36664 -0.52891 0.02006 1.03258 1.37796 1.39110 1.50759 2.17554 2.34956 3.03961 3.15485 3.50693 3.65713 3.84026 3.87431 4.00660 4.12754 4.23696 4.40451 4.41995 4.50034 4.64053 4.76548 4.84651 4.92189 5.00078 5.04777 5.08438 5.15962 5.24314 5.27555 5.39211 5.53305 5.56374 5.76895 5.86631 5.98309 6.24499 6.69773 7.03986 7.27214 8.85799 Molecular weight = 241.12amu Principal moments of inertia in cm(-1) A = 0.034664 B = 0.005654 C = 0.005284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.551888 B = 4951.009895 C = 5297.824944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.076 4.076 3 C -0.110 4.110 4 C 0.051 3.949 5 N -0.505 5.505 6 C 0.126 3.874 7 C -0.116 4.116 8 C -0.109 4.109 9 C -0.058 4.058 10 C 0.019 3.981 11 C -0.521 4.521 12 H 0.026 0.974 13 C 0.009 3.991 14 N -0.949 5.949 15 Si 0.951 3.049 16 H -0.265 1.265 17 H -0.284 1.284 18 H -0.243 1.243 19 C -0.100 4.100 20 C -0.112 4.112 21 C -0.050 4.050 22 H 0.080 0.920 23 H 0.040 0.960 24 H 0.053 0.947 25 H 0.098 0.902 26 H 0.083 0.917 27 H 0.174 0.826 28 H 0.177 0.823 29 H 0.133 0.867 30 H 0.036 0.964 31 H 0.034 0.966 32 H 0.268 0.732 33 H 0.131 0.869 34 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.927 -13.283 -11.559 18.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.114 4.114 3 C -0.112 4.112 4 C -0.093 4.093 5 N -0.212 5.212 6 C -0.045 4.045 7 C -0.118 4.118 8 C -0.129 4.129 9 C -0.058 4.058 10 C -0.018 4.018 11 C -0.559 4.559 12 H 0.045 0.955 13 C -0.188 4.188 14 N -0.589 5.589 15 Si 0.774 3.226 16 H -0.190 1.190 17 H -0.210 1.210 18 H -0.166 1.166 19 C -0.120 4.120 20 C -0.129 4.129 21 C -0.055 4.055 22 H 0.099 0.901 23 H 0.059 0.941 24 H 0.072 0.928 25 H 0.116 0.884 26 H 0.101 0.899 27 H 0.191 0.809 28 H 0.194 0.806 29 H 0.151 0.849 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.077 0.923 33 H 0.149 0.851 34 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 6.008 -12.939 -12.337 18.860 hybrid contribution -0.181 0.490 1.670 1.749 sum 5.827 -12.449 -10.667 17.399 Atomic orbital electron populations 1.21755 0.94194 1.02839 1.01588 1.20539 0.96369 0.89905 1.04581 1.20905 0.99371 0.98680 0.92237 1.22423 0.97549 0.90851 0.98436 1.67412 1.13548 1.07981 1.32283 1.23380 0.94885 0.99971 0.86227 1.19201 1.01898 0.95064 0.95625 1.20925 1.01242 0.99846 0.90872 1.19990 0.95350 0.94440 0.95989 1.18726 0.96018 0.95060 0.92034 1.21128 0.98289 1.27937 1.08554 0.95544 1.25981 0.99071 0.94432 0.99324 1.70060 1.28754 1.31852 1.28264 0.85650 0.79250 0.80206 0.77533 1.19013 1.20982 1.16640 1.21137 0.97395 0.93702 0.99717 1.21148 1.00359 1.00946 0.90457 1.18315 0.98964 0.93359 0.94878 0.90066 0.94052 0.92796 0.88379 0.89878 0.80912 0.80557 0.84897 0.94545 0.94820 0.92335 0.85110 0.82623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 9.89 71.98 0.71 -1.79 16 2 C -0.08 -1.32 5.54 29.85 0.17 -1.15 16 3 C -0.11 -2.78 5.16 -19.75 -0.10 -2.88 16 4 C 0.05 1.29 10.72 84.10 0.90 2.19 16 5 N -0.50 -15.06 10.30 -195.54 -2.01 -17.07 16 6 C 0.13 3.82 11.05 85.31 0.94 4.77 16 7 C -0.12 -3.93 5.74 -21.31 -0.12 -4.05 16 8 C -0.11 -4.07 9.41 22.31 0.21 -3.86 16 9 C -0.06 -2.34 5.04 -20.07 -0.10 -2.44 16 10 C 0.02 0.86 4.14 29.10 0.12 0.98 16 11 C -0.52 -29.62 9.65 25.60 0.25 -29.38 16 12 H 0.03 1.69 7.98 -2.91 -0.02 1.67 16 13 C 0.01 0.52 5.47 84.65 0.46 0.99 16 14 N -0.95 -58.91 13.96 21.45 0.30 -58.61 16 15 Si 0.95 42.83 27.47 68.60 1.88 44.71 16 16 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 17 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 18 H -0.24 -10.02 6.54 99.48 0.65 -9.37 16 19 C -0.10 -3.56 9.59 22.07 0.21 -3.35 16 20 C -0.11 -3.34 9.33 22.28 0.21 -3.14 16 21 C -0.05 -1.56 5.75 -21.28 -0.12 -1.68 16 22 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 23 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.10 1.24 8.06 -2.39 -0.02 1.22 16 26 H 0.08 1.32 6.84 -2.39 -0.02 1.30 16 27 H 0.17 3.26 8.05 -2.91 -0.02 3.23 16 28 H 0.18 4.45 8.06 -2.91 -0.02 4.42 16 29 H 0.13 4.68 8.06 -2.91 -0.02 4.66 16 30 H 0.04 1.60 7.14 -2.39 -0.02 1.59 16 31 H 0.03 1.48 7.49 -2.39 -0.02 1.46 16 32 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 33 H 0.13 4.34 8.06 -2.91 -0.02 4.32 16 34 H 0.16 3.57 6.65 -2.91 -0.02 3.55 16 Total: -1.00 -67.86 288.06 4.93 -62.93 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: 1.03 Total: 12.82 kcal Atomic # 6 Polarization: -48.51 SS G_CDS: 3.73 Total: -44.78 kcal Atomic # 7 Polarization: -73.97 SS G_CDS: -1.71 Total: -75.68 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 1.88 Total: 44.71 kcal Total: -67.86 4.93 -62.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260412609.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.187 kcal (2) G-P(sol) polarization free energy of solvation -67.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds