Wall clock time and date at job start Mon Mar 30 2020 06:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34642 * 116.99795 * 2 1 4 4 O 1.21509 * 119.99784 * 0.02562 * 3 2 1 5 5 N 1.34772 * 120.00090 * 179.97438 * 3 2 1 6 6 C 1.47583 * 134.48926 * 0.02562 * 5 3 2 7 7 C 1.53946 * 86.11775 * 204.63904 * 6 5 3 8 8 C 1.47576 * 134.49552 * 180.02562 * 5 3 2 9 9 H 1.09002 * 113.76867 * 41.06346 * 8 5 3 10 10 C 1.52996 * 113.77205 * 269.66157 * 8 5 3 11 11 H 1.08999 * 109.47387 * 209.32889 * 10 8 5 12 12 C 1.50709 * 109.46977 * 329.33019 * 10 8 5 13 13 H 1.08002 * 119.99783 * 64.52271 * 12 10 8 14 14 C 1.37875 * 119.99481 * 244.52403 * 12 10 8 15 15 N 1.31508 * 120.00394 * 354.77758 * 14 12 10 16 16 Si 1.86806 * 119.99482 * 174.78280 * 14 12 10 17 17 H 1.48501 * 109.47245 * 59.99818 * 16 14 12 18 18 H 1.48499 * 109.47011 * 179.97438 * 16 14 12 19 19 H 1.48492 * 109.46946 * 299.99558 * 16 14 12 20 20 C 1.52997 * 109.47164 * 89.32531 * 10 8 5 21 21 C 1.53002 * 109.46909 * 65.35250 * 20 10 8 22 22 C 1.53000 * 109.47618 * 185.35108 * 20 10 8 23 23 H 1.09005 * 109.47432 * 60.00316 * 1 2 3 24 24 H 1.08999 * 109.47125 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47368 * 300.00085 * 1 2 3 26 26 H 1.08998 * 113.77200 * 90.33416 * 6 5 3 27 27 H 1.09008 * 113.76969 * 318.93736 * 6 5 3 28 28 H 1.08996 * 113.74489 * 222.05119 * 7 6 5 29 29 H 1.09003 * 113.74283 * 90.73468 * 7 6 5 30 30 H 0.97000 * 120.00260 * 180.02562 * 15 14 12 31 31 H 1.08997 * 109.47405 * 305.35528 * 20 10 8 32 32 H 1.08994 * 109.47311 * 59.99689 * 21 20 10 33 33 H 1.09005 * 109.47276 * 180.02562 * 21 20 10 34 34 H 1.09005 * 109.46814 * 299.99748 * 21 20 10 35 35 H 1.09000 * 109.46970 * 65.48349 * 22 20 10 36 36 H 1.08991 * 109.47517 * 185.48575 * 22 20 10 37 37 H 1.09011 * 109.46671 * 305.48879 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4013 2.2187 0.0005 5 7 3.4091 1.2703 0.0005 6 6 4.4970 0.2731 0.0007 7 6 5.3633 1.3725 0.6416 8 6 4.3868 2.3757 0.0012 9 1 4.1142 3.2029 0.6566 10 6 4.8021 2.8325 -1.3987 11 1 5.8193 3.2230 -1.3667 12 6 4.7427 1.6627 -2.3471 13 1 3.7957 1.1911 -2.5641 14 6 5.8974 1.1948 -2.9375 15 7 7.0338 1.8309 -2.7549 16 14 5.8475 -0.3429 -3.9971 17 1 4.9225 -0.1276 -5.1388 18 1 7.2097 -0.6334 -4.5123 19 1 5.3707 -1.4896 -3.1831 20 6 3.8499 3.9287 -1.8809 21 6 4.0077 5.1668 -0.9959 22 6 4.1819 4.2918 -3.3296 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 4.8252 -0.0193 -0.9967 27 1 4.3124 -0.5785 0.6557 28 1 6.3744 1.4257 0.2381 29 1 5.3388 1.3711 1.7314 30 1 7.8461 1.5019 -3.1706 31 1 2.8226 3.5691 -1.8227 32 1 5.0350 5.5264 -1.0540 33 1 3.3290 5.9477 -1.3391 34 1 3.7712 4.9082 0.0362 35 1 3.9762 3.4374 -3.9745 36 1 3.5699 5.1380 -3.6415 37 1 5.2362 4.5584 -3.4049 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260479354.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:00 Heat of formation + Delta-G solvation = -54.388241 kcal Electronic energy + Delta-G solvation = -18871.809800 eV Core-core repulsion = 16036.511429 eV Total energy + Delta-G solvation = -2835.298371 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -39.96930 -38.41189 -35.42376 -34.93416 -32.29787 -29.53337 -27.55497 -26.73170 -26.54946 -24.90457 -22.25346 -21.51187 -19.22706 -18.38757 -17.12440 -16.66495 -16.09201 -15.82746 -14.76679 -14.49527 -13.86832 -13.44805 -13.19173 -12.90644 -12.62179 -12.16259 -11.86342 -11.80662 -11.43638 -11.26480 -11.17834 -11.01627 -10.68546 -10.64458 -10.29272 -10.19680 -10.06605 -9.91286 -9.64250 -9.63207 -8.97284 -8.94273 -8.54488 -7.69859 -6.10197 -4.05110 2.79027 3.24951 3.31642 3.35685 3.63756 4.35795 4.61694 5.18630 5.35126 5.44393 5.50303 5.69897 5.80533 5.94663 6.08123 6.15758 6.19971 6.28031 6.34344 6.37563 6.56799 6.68700 6.75054 6.82415 6.88467 6.98056 7.00809 7.26340 7.30670 7.42398 7.58129 7.78260 7.85737 8.36079 8.62926 8.99302 9.05287 9.50253 10.98502 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.018194 B = 0.011386 C = 0.009044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.629108 B = 2458.470705 C = 3095.302140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 O -0.377 6.377 3 C 0.660 3.340 4 O -0.591 6.591 5 N -0.602 5.602 6 C 0.114 3.886 7 C -0.148 4.148 8 C 0.169 3.831 9 H 0.064 0.936 10 C 0.029 3.971 11 H 0.087 0.913 12 C -0.492 4.492 13 H 0.050 0.950 14 C 0.069 3.931 15 N -0.888 5.888 16 Si 0.877 3.123 17 H -0.278 1.278 18 H -0.287 1.287 19 H -0.274 1.274 20 C -0.086 4.086 21 C -0.144 4.144 22 C -0.118 4.118 23 H 0.058 0.942 24 H 0.093 0.907 25 H 0.055 0.945 26 H 0.117 0.883 27 H 0.053 0.947 28 H 0.096 0.904 29 H 0.068 0.932 30 H 0.262 0.738 31 H 0.052 0.948 32 H 0.047 0.953 33 H 0.035 0.965 34 H 0.045 0.955 35 H 0.057 0.943 36 H 0.020 0.980 37 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.208 -2.065 5.031 6.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 O -0.292 6.292 3 C 0.415 3.585 4 O -0.482 6.482 5 N -0.342 5.342 6 C -0.008 4.008 7 C -0.186 4.186 8 C 0.069 3.931 9 H 0.082 0.918 10 C 0.010 3.990 11 H 0.105 0.895 12 C -0.530 4.530 13 H 0.069 0.931 14 C -0.132 4.132 15 N -0.526 5.526 16 Si 0.705 3.295 17 H -0.204 1.204 18 H -0.213 1.213 19 H -0.200 1.200 20 C -0.105 4.105 21 C -0.202 4.202 22 C -0.176 4.176 23 H 0.076 0.924 24 H 0.111 0.889 25 H 0.074 0.926 26 H 0.135 0.865 27 H 0.071 0.929 28 H 0.114 0.886 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.054 0.946 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.039 0.961 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.475 -1.804 4.982 6.935 hybrid contribution -0.340 -0.904 -0.731 1.211 sum -4.815 -2.708 4.251 6.970 Atomic orbital electron populations 1.22998 0.76078 1.02396 1.02104 1.86253 1.22828 1.32361 1.87737 1.17734 0.82495 0.81481 0.76780 1.90906 1.64072 1.35006 1.58204 1.48956 0.99450 1.13049 1.72712 1.23486 0.82994 0.91809 1.02525 1.23379 1.00027 0.96912 0.98324 1.23339 0.81256 0.88878 0.99676 0.91767 1.19323 0.97118 0.93711 0.88829 0.89470 1.20783 0.93111 1.13796 1.25343 0.93149 1.24877 0.95764 0.96697 0.95910 1.69847 0.99197 1.38995 1.44602 0.86901 0.77104 0.84195 0.81317 1.20351 1.21275 1.19997 1.21147 1.00114 0.94752 0.94480 1.21922 1.00255 0.98293 0.99685 1.21536 1.00014 0.99067 0.96962 0.92370 0.88869 0.92577 0.86525 0.92885 0.88579 0.91327 0.92749 0.92922 0.93402 0.94551 0.93630 0.92419 0.96065 0.93267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.86 10.56 101.05 1.07 1.93 16 2 O -0.38 -7.30 10.55 -40.33 -0.43 -7.72 16 3 C 0.66 14.57 8.92 54.05 0.48 15.05 16 4 O -0.59 -14.26 16.68 -19.28 -0.32 -14.58 16 5 N -0.60 -12.84 2.79 -176.97 -0.49 -13.33 16 6 C 0.11 2.22 8.11 -2.97 -0.02 2.19 16 7 C -0.15 -2.72 7.81 -25.80 -0.20 -2.92 16 8 C 0.17 3.53 4.19 -66.87 -0.28 3.25 16 9 H 0.06 1.31 6.28 -51.93 -0.33 0.99 16 10 C 0.03 0.67 1.81 -91.77 -0.17 0.51 16 11 H 0.09 2.16 6.92 -51.93 -0.36 1.80 16 12 C -0.49 -12.11 3.53 -34.44 -0.12 -12.23 16 13 H 0.05 1.34 7.69 -52.49 -0.40 0.94 16 14 C 0.07 1.73 5.00 -17.82 -0.09 1.64 16 15 N -0.89 -22.88 12.62 55.43 0.70 -22.18 16 16 Si 0.88 19.89 29.21 -169.99 -4.97 14.93 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 20 C -0.09 -1.89 2.50 -90.62 -0.23 -2.12 16 21 C -0.14 -2.75 9.01 37.16 0.33 -2.42 16 22 C -0.12 -2.55 8.74 37.16 0.32 -2.22 16 23 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 24 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.12 2.53 5.18 -51.93 -0.27 2.26 16 27 H 0.05 0.91 8.14 -51.92 -0.42 0.48 16 28 H 0.10 1.86 8.10 -51.93 -0.42 1.43 16 29 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 30 H 0.26 6.59 8.31 -40.82 -0.34 6.26 16 31 H 0.05 1.28 7.96 -51.93 -0.41 0.87 16 32 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.04 0.85 6.37 -51.93 -0.33 0.52 16 35 H 0.06 1.33 7.29 -51.93 -0.38 0.95 16 36 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.05 1.08 8.14 -51.92 -0.42 0.66 16 LS Contribution 300.70 15.07 4.53 4.53 Total: -1.00 -28.09 300.70 -5.72 -33.80 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -5.84 Total: 1.90 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: 1.10 Total: 2.65 kcal Atomic # 7 Polarization: -35.72 SS G_CDS: 0.21 Total: -35.52 kcal Atomic # 8 Polarization: -21.56 SS G_CDS: -0.75 Total: -22.30 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -4.97 Total: 14.93 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.09 -5.72 -33.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260479354.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.584 kcal (2) G-P(sol) polarization free energy of solvation -28.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds