Wall clock time and date at job start Mon Mar 30 2020 06:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34642 * 116.99795 * 2 1 4 4 O 1.21509 * 119.99784 * 0.02562 * 3 2 1 5 5 N 1.34772 * 120.00090 * 179.97438 * 3 2 1 6 6 C 1.47583 * 134.48926 * 0.02562 * 5 3 2 7 7 C 1.53946 * 86.11775 * 204.63904 * 6 5 3 8 8 C 1.47576 * 134.49552 * 180.02562 * 5 3 2 9 9 H 1.09002 * 113.76867 * 41.06346 * 8 5 3 10 10 C 1.52996 * 113.77205 * 269.66157 * 8 5 3 11 11 H 1.08999 * 109.47387 * 209.32889 * 10 8 5 12 12 C 1.50709 * 109.46977 * 329.33019 * 10 8 5 13 13 H 1.08002 * 119.99783 * 64.52271 * 12 10 8 14 14 C 1.37875 * 119.99481 * 244.52403 * 12 10 8 15 15 N 1.31508 * 120.00394 * 354.77758 * 14 12 10 16 16 Si 1.86806 * 119.99482 * 174.78280 * 14 12 10 17 17 H 1.48501 * 109.47245 * 59.99818 * 16 14 12 18 18 H 1.48499 * 109.47011 * 179.97438 * 16 14 12 19 19 H 1.48492 * 109.46946 * 299.99558 * 16 14 12 20 20 C 1.52997 * 109.47164 * 89.32531 * 10 8 5 21 21 C 1.53002 * 109.46909 * 65.35250 * 20 10 8 22 22 C 1.53000 * 109.47618 * 185.35108 * 20 10 8 23 23 H 1.09005 * 109.47432 * 60.00316 * 1 2 3 24 24 H 1.08999 * 109.47125 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47368 * 300.00085 * 1 2 3 26 26 H 1.08998 * 113.77200 * 90.33416 * 6 5 3 27 27 H 1.09008 * 113.76969 * 318.93736 * 6 5 3 28 28 H 1.08996 * 113.74489 * 222.05119 * 7 6 5 29 29 H 1.09003 * 113.74283 * 90.73468 * 7 6 5 30 30 H 0.97000 * 120.00260 * 180.02562 * 15 14 12 31 31 H 1.08997 * 109.47405 * 305.35528 * 20 10 8 32 32 H 1.08994 * 109.47311 * 59.99689 * 21 20 10 33 33 H 1.09005 * 109.47276 * 180.02562 * 21 20 10 34 34 H 1.09005 * 109.46814 * 299.99748 * 21 20 10 35 35 H 1.09000 * 109.46970 * 65.48349 * 22 20 10 36 36 H 1.08991 * 109.47517 * 185.48575 * 22 20 10 37 37 H 1.09011 * 109.46671 * 305.48879 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4013 2.2187 0.0005 5 7 3.4091 1.2703 0.0005 6 6 4.4970 0.2731 0.0007 7 6 5.3633 1.3725 0.6416 8 6 4.3868 2.3757 0.0012 9 1 4.1142 3.2029 0.6566 10 6 4.8021 2.8325 -1.3987 11 1 5.8193 3.2230 -1.3667 12 6 4.7427 1.6627 -2.3471 13 1 3.7957 1.1911 -2.5641 14 6 5.8974 1.1948 -2.9375 15 7 7.0338 1.8309 -2.7549 16 14 5.8475 -0.3429 -3.9971 17 1 4.9225 -0.1276 -5.1388 18 1 7.2097 -0.6334 -4.5123 19 1 5.3707 -1.4896 -3.1831 20 6 3.8499 3.9287 -1.8809 21 6 4.0077 5.1668 -0.9959 22 6 4.1819 4.2918 -3.3296 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 4.8252 -0.0193 -0.9967 27 1 4.3124 -0.5785 0.6557 28 1 6.3744 1.4257 0.2381 29 1 5.3388 1.3711 1.7314 30 1 7.8461 1.5019 -3.1706 31 1 2.8226 3.5691 -1.8227 32 1 5.0350 5.5264 -1.0540 33 1 3.3290 5.9477 -1.3391 34 1 3.7712 4.9082 0.0362 35 1 3.9762 3.4374 -3.9745 36 1 3.5699 5.1380 -3.6415 37 1 5.2362 4.5584 -3.4049 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260479354.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:59 Heat of formation + Delta-G solvation = -70.111699 kcal Electronic energy + Delta-G solvation = -18872.491620 eV Core-core repulsion = 16036.511429 eV Total energy + Delta-G solvation = -2835.980192 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.60037 -40.01230 -37.06440 -36.66370 -34.20799 -31.13016 -29.29676 -28.27153 -28.00489 -26.64596 -23.99128 -23.09125 -20.89577 -20.07570 -18.83057 -18.42574 -17.74167 -17.46651 -16.40832 -16.26196 -15.34303 -15.19863 -14.81171 -14.47801 -14.14785 -13.87091 -13.57806 -13.38573 -12.99143 -12.87713 -12.85780 -12.73767 -12.45435 -12.24614 -11.94741 -11.80752 -11.70629 -11.65487 -11.35971 -11.32028 -10.87534 -10.76525 -10.42629 -9.39298 -8.04330 -6.01589 1.26377 1.41671 1.46883 1.51215 1.96077 2.47374 3.12351 3.25134 3.79327 4.20476 4.34714 4.37746 4.39019 4.42137 4.53681 4.57992 4.63703 4.71023 4.72861 4.88199 4.94528 5.04579 5.12114 5.21808 5.24386 5.29779 5.40927 5.51849 5.61874 5.65614 5.76655 5.84039 5.97065 6.47298 6.96939 7.04115 7.38725 7.54504 9.03677 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.018194 B = 0.011386 C = 0.009044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.629108 B = 2458.470705 C = 3095.302140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 O -0.383 6.383 3 C 0.653 3.347 4 O -0.619 6.619 5 N -0.607 5.607 6 C 0.113 3.887 7 C -0.129 4.129 8 C 0.159 3.841 9 H 0.070 0.930 10 C 0.033 3.967 11 H 0.069 0.931 12 C -0.485 4.485 13 H 0.026 0.974 14 C 0.042 3.958 15 N -0.908 5.908 16 Si 0.918 3.082 17 H -0.289 1.289 18 H -0.285 1.285 19 H -0.266 1.266 20 C -0.086 4.086 21 C -0.136 4.136 22 C -0.110 4.110 23 H 0.050 0.950 24 H 0.136 0.864 25 H 0.062 0.938 26 H 0.092 0.908 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.101 0.899 30 H 0.262 0.738 31 H 0.024 0.976 32 H 0.056 0.944 33 H 0.050 0.950 34 H 0.048 0.952 35 H 0.033 0.967 36 H 0.044 0.956 37 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.445 -2.598 5.983 7.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 O -0.297 6.297 3 C 0.409 3.591 4 O -0.513 6.513 5 N -0.346 5.346 6 C -0.009 4.009 7 C -0.167 4.167 8 C 0.058 3.942 9 H 0.088 0.912 10 C 0.014 3.986 11 H 0.087 0.913 12 C -0.523 4.523 13 H 0.044 0.956 14 C -0.158 4.158 15 N -0.547 5.547 16 Si 0.745 3.255 17 H -0.215 1.215 18 H -0.210 1.210 19 H -0.191 1.191 20 C -0.105 4.105 21 C -0.193 4.193 22 C -0.167 4.167 23 H 0.069 0.931 24 H 0.154 0.846 25 H 0.081 0.919 26 H 0.110 0.890 27 H 0.100 0.900 28 H 0.104 0.896 29 H 0.120 0.880 30 H 0.072 0.928 31 H 0.043 0.957 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.052 0.948 36 H 0.063 0.937 37 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -4.717 -2.364 5.938 7.943 hybrid contribution -0.360 -0.752 -1.047 1.338 sum -5.076 -3.115 4.891 7.707 Atomic orbital electron populations 1.23401 0.73517 1.05244 1.02099 1.86250 1.25338 1.30781 1.87300 1.17964 0.82764 0.81906 0.76481 1.90872 1.64783 1.36146 1.59475 1.49110 0.99627 1.13673 1.72233 1.23455 0.82552 0.92877 1.01977 1.23311 0.98532 0.94850 0.99995 1.23304 0.82356 0.89806 0.98709 0.91222 1.19208 0.96272 0.93305 0.89850 0.91296 1.20666 0.91924 1.14127 1.25618 0.95618 1.25225 0.95547 0.98310 0.96699 1.69915 0.99426 1.39857 1.45454 0.86254 0.76751 0.82536 0.79922 1.21495 1.21012 1.19070 1.21105 0.98096 0.95967 0.95357 1.21816 1.01215 0.97146 0.99120 1.21434 0.99863 0.98962 0.96454 0.93096 0.84593 0.91935 0.89004 0.89989 0.89612 0.88022 0.92841 0.95702 0.92522 0.93058 0.93342 0.94750 0.93693 0.94040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.39 10.56 113.37 1.20 2.59 16 2 O -0.38 -14.28 10.55 -55.51 -0.59 -14.86 16 3 C 0.65 28.45 8.92 129.79 1.16 29.61 16 4 O -0.62 -29.83 16.68 19.81 0.33 -29.50 16 5 N -0.61 -25.38 2.79 -944.21 -2.63 -28.01 16 6 C 0.11 4.23 8.11 86.48 0.70 4.93 16 7 C -0.13 -4.50 7.81 31.26 0.24 -4.25 16 8 C 0.16 6.52 4.19 45.09 0.19 6.71 16 9 H 0.07 2.77 6.28 -2.39 -0.01 2.75 16 10 C 0.03 1.51 1.81 -11.54 -0.02 1.49 16 11 H 0.07 3.42 6.92 -2.39 -0.02 3.41 16 12 C -0.48 -24.13 3.53 25.60 0.09 -24.04 16 13 H 0.03 1.39 7.69 -2.91 -0.02 1.37 16 14 C 0.04 2.10 5.00 84.66 0.42 2.53 16 15 N -0.91 -46.80 12.62 21.45 0.27 -46.53 16 16 Si 0.92 40.77 29.21 68.60 2.00 42.77 16 17 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 18 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 19 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 20 C -0.09 -3.79 2.50 -10.79 -0.03 -3.82 16 21 C -0.14 -5.00 9.01 71.98 0.65 -4.36 16 22 C -0.11 -4.72 8.74 71.98 0.63 -4.09 16 23 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 24 H 0.14 2.48 8.14 -2.39 -0.02 2.46 16 25 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.09 3.94 5.18 -2.39 -0.01 3.92 16 27 H 0.08 2.59 8.14 -2.38 -0.02 2.57 16 28 H 0.09 3.20 8.10 -2.39 -0.02 3.18 16 29 H 0.10 2.88 8.14 -2.39 -0.02 2.87 16 30 H 0.26 13.14 8.31 -92.71 -0.77 12.37 16 31 H 0.02 1.22 7.96 -2.39 -0.02 1.20 16 32 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 34 H 0.05 1.74 6.37 -2.38 -0.02 1.72 16 35 H 0.03 1.59 7.29 -2.39 -0.02 1.57 16 36 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.04 1.81 8.14 -2.38 -0.02 1.80 16 Total: -1.00 -59.95 300.70 5.66 -54.29 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: 1.04 Total: 14.55 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: 5.23 Total: 7.29 kcal Atomic # 7 Polarization: -72.18 SS G_CDS: -2.36 Total: -74.54 kcal Atomic # 8 Polarization: -44.10 SS G_CDS: -0.26 Total: -44.36 kcal Atomic # 14 Polarization: 40.77 SS G_CDS: 2.00 Total: 42.77 kcal Total: -59.95 5.66 -54.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260479354.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.822 kcal (2) G-P(sol) polarization free energy of solvation -59.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds