Wall clock time and date at job start Mon Mar 30 2020 06:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34643 * 116.99433 * 2 1 4 4 O 1.21506 * 120.00443 * 359.97438 * 3 2 1 5 5 N 1.34778 * 119.99666 * 179.97438 * 3 2 1 6 6 C 1.47069 * 136.05757 * 2.64026 * 5 3 2 7 7 C 1.53493 * 87.98353 * 152.91225 * 6 5 3 8 8 C 1.47061 * 136.05738 * 182.68486 * 5 3 2 9 9 H 1.08997 * 113.47121 * 321.92934 * 8 5 3 10 10 C 1.53005 * 113.46516 * 92.30819 * 8 5 3 11 11 H 1.08997 * 109.47083 * 52.89443 * 10 8 5 12 12 C 1.50704 * 109.47102 * 172.89419 * 10 8 5 13 13 H 1.08005 * 119.99896 * 5.34212 * 12 10 8 14 14 C 1.37875 * 119.99862 * 185.33834 * 12 10 8 15 15 N 1.31512 * 120.00203 * 5.50917 * 14 12 10 16 16 Si 1.86799 * 119.99654 * 185.50963 * 14 12 10 17 17 H 1.48500 * 109.47514 * 59.99909 * 16 14 12 18 18 H 1.48507 * 109.47180 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47407 * 299.99836 * 16 14 12 20 20 C 1.53002 * 109.47223 * 292.89314 * 10 8 5 21 21 C 1.52995 * 109.46820 * 318.49708 * 20 10 8 22 22 C 1.52999 * 109.46867 * 78.49679 * 20 10 8 23 23 H 1.08999 * 109.47220 * 299.99879 * 1 2 3 24 24 H 1.08997 * 109.47582 * 60.00515 * 1 2 3 25 25 H 1.09004 * 109.47041 * 180.02562 * 1 2 3 26 26 H 1.08996 * 113.46754 * 267.69102 * 6 5 3 27 27 H 1.09002 * 113.46859 * 38.12840 * 6 5 3 28 28 H 1.08999 * 114.20960 * 272.47690 * 7 6 5 29 29 H 1.09003 * 114.20350 * 139.65689 * 7 6 5 30 30 H 0.97000 * 120.00019 * 179.97438 * 15 14 12 31 31 H 1.08999 * 109.47055 * 198.49346 * 20 10 8 32 32 H 1.09003 * 109.47422 * 56.34050 * 21 20 10 33 33 H 1.09007 * 109.46759 * 176.33771 * 21 20 10 34 34 H 1.09003 * 109.47327 * 296.33619 * 21 20 10 35 35 H 1.08996 * 109.47248 * 64.41129 * 22 20 10 36 36 H 1.08999 * 109.46917 * 184.41727 * 22 20 10 37 37 H 1.09009 * 109.46933 * 304.41199 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0631 1.1997 0.0000 4 8 1.4013 2.2188 -0.0005 5 7 3.4091 1.2703 0.0005 6 6 4.5200 0.3077 -0.0459 7 6 5.3727 1.4057 -0.6965 8 6 4.4131 2.3438 0.0485 9 1 4.1331 3.2261 -0.5269 10 6 4.8732 2.6847 1.4674 11 1 5.2003 1.7753 1.9715 12 6 6.0179 3.6627 1.4029 13 1 6.3247 4.0731 0.4521 14 6 6.6735 4.0338 2.5576 15 7 6.3732 3.4544 3.6994 16 14 7.9883 5.3594 2.5003 17 1 7.3932 6.6258 2.0030 18 1 8.5370 5.5717 3.8639 19 1 9.0806 4.9343 1.5885 20 6 3.7121 3.3090 2.2439 21 6 2.9597 4.2858 1.3382 22 6 2.7584 2.2066 2.7089 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 4.8763 0.0082 0.9397 27 1 4.3312 -0.5417 -0.7024 28 1 5.2896 1.4517 -1.7823 29 1 6.4018 1.4430 -0.3389 30 1 6.8347 3.7151 4.5118 31 1 4.1005 3.8430 3.1111 32 1 2.6273 3.7659 0.4397 33 1 2.0944 4.6815 1.8702 34 1 3.6212 5.1061 1.0596 35 1 3.2727 1.5554 3.4156 36 1 1.8919 2.6565 3.1935 37 1 2.4311 1.6227 1.8486 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260479357.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:04 Heat of formation + Delta-G solvation = -39.179037 kcal Electronic energy + Delta-G solvation = -18949.984051 eV Core-core repulsion = 16115.345200 eV Total energy + Delta-G solvation = -2834.638851 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.55165 -38.70324 -35.68632 -34.92711 -32.05529 -30.07611 -27.70121 -26.91536 -26.03027 -24.73319 -22.83931 -21.71360 -19.59132 -18.58340 -17.03414 -16.68315 -16.30759 -15.88368 -14.83485 -14.47897 -13.96219 -13.78548 -13.26400 -12.91590 -12.59820 -12.33737 -11.98766 -11.97353 -11.70575 -11.26946 -11.14271 -10.93126 -10.83363 -10.68281 -10.46698 -10.20036 -10.08281 -9.90295 -9.77741 -9.35337 -9.05271 -8.81674 -8.34734 -7.89455 -6.03798 -4.07840 2.49997 3.31120 3.35297 3.36739 3.39692 4.33216 4.43597 4.99206 5.28588 5.29599 5.36501 5.51334 5.59163 5.75008 5.88583 5.99028 6.19942 6.30500 6.33784 6.39005 6.43590 6.50570 6.68861 6.73870 6.84903 6.98352 7.08587 7.25325 7.42374 7.58335 7.74371 7.89691 7.99705 8.27179 8.41116 8.79161 8.95107 9.55501 11.04368 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.036235 B = 0.007827 C = 0.007230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.545202 B = 3576.550790 C = 3871.886616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 O -0.379 6.379 3 C 0.674 3.326 4 O -0.568 6.568 5 N -0.629 5.629 6 C 0.108 3.892 7 C -0.152 4.152 8 C 0.170 3.830 9 H 0.078 0.922 10 C 0.055 3.945 11 H 0.040 0.960 12 C -0.511 4.511 13 H 0.057 0.943 14 C 0.067 3.933 15 N -0.885 5.885 16 Si 0.889 3.111 17 H -0.277 1.277 18 H -0.289 1.289 19 H -0.277 1.277 20 C -0.078 4.078 21 C -0.148 4.148 22 C -0.144 4.144 23 H 0.060 0.940 24 H 0.058 0.942 25 H 0.095 0.905 26 H 0.087 0.913 27 H 0.067 0.933 28 H 0.080 0.920 29 H 0.103 0.897 30 H 0.261 0.739 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.022 0.978 34 H 0.044 0.956 35 H 0.039 0.961 36 H 0.027 0.973 37 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.338 -6.862 -6.427 10.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 O -0.294 6.294 3 C 0.431 3.569 4 O -0.458 6.458 5 N -0.371 5.371 6 C -0.015 4.015 7 C -0.190 4.190 8 C 0.071 3.929 9 H 0.096 0.904 10 C 0.036 3.964 11 H 0.058 0.942 12 C -0.550 4.550 13 H 0.076 0.924 14 C -0.135 4.135 15 N -0.522 5.522 16 Si 0.717 3.283 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.202 1.202 20 C -0.097 4.097 21 C -0.205 4.205 22 C -0.202 4.202 23 H 0.079 0.921 24 H 0.077 0.923 25 H 0.114 0.886 26 H 0.105 0.895 27 H 0.085 0.915 28 H 0.099 0.901 29 H 0.121 0.879 30 H 0.071 0.929 31 H 0.099 0.901 32 H 0.088 0.912 33 H 0.041 0.959 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.046 0.954 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.815 -6.596 -6.238 10.781 hybrid contribution 0.399 0.753 0.296 0.902 sum -5.416 -5.843 -5.942 9.939 Atomic orbital electron populations 1.23059 0.75486 1.02681 1.02415 1.86253 1.23291 1.32186 1.87669 1.17270 0.81793 0.81759 0.76107 1.90949 1.63476 1.34464 1.56957 1.48826 0.99907 1.14078 1.74244 1.22973 0.83987 0.93614 1.00952 1.23370 1.00071 0.96366 0.99202 1.23041 0.79958 0.89833 1.00118 0.90379 1.18964 0.93021 0.97155 0.87275 0.94240 1.20889 1.14746 1.25880 0.93472 0.92433 1.24895 0.96835 0.96270 0.95546 1.69952 1.42083 1.41246 0.98950 0.86708 0.81917 0.82660 0.77009 1.20252 1.21429 1.20244 1.20999 0.94121 0.95153 0.99399 1.22035 0.97971 0.99609 1.00857 1.22107 0.98526 0.99654 0.99881 0.92125 0.92290 0.88645 0.89455 0.91463 0.90095 0.87915 0.92907 0.90105 0.91249 0.95860 0.93652 0.94216 0.95388 0.93518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.74 10.56 101.05 1.07 1.81 16 2 O -0.38 -6.41 10.59 -40.33 -0.43 -6.83 16 3 C 0.67 13.22 6.19 54.06 0.33 13.56 16 4 O -0.57 -12.38 13.52 -19.28 -0.26 -12.64 16 5 N -0.63 -11.94 2.60 -183.28 -0.48 -12.42 16 6 C 0.11 1.72 8.28 -8.51 -0.07 1.65 16 7 C -0.15 -2.46 7.96 -26.22 -0.21 -2.67 16 8 C 0.17 3.43 2.42 -72.40 -0.18 3.25 16 9 H 0.08 1.65 6.72 -51.93 -0.35 1.30 16 10 C 0.06 1.29 1.22 -91.77 -0.11 1.18 16 11 H 0.04 1.00 6.86 -51.93 -0.36 0.65 16 12 C -0.51 -13.00 7.96 -34.44 -0.27 -13.27 16 13 H 0.06 1.43 7.75 -52.48 -0.41 1.02 16 14 C 0.07 1.76 5.08 -17.82 -0.09 1.67 16 15 N -0.88 -24.46 12.08 55.43 0.67 -23.79 16 16 Si 0.89 20.53 29.54 -169.99 -5.02 15.51 16 17 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 18 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 19 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 20 C -0.08 -1.87 2.55 -90.62 -0.23 -2.10 16 21 C -0.15 -3.39 8.15 37.15 0.30 -3.09 16 22 C -0.14 -3.25 8.87 37.16 0.33 -2.92 16 23 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.09 1.44 7.29 -51.93 -0.38 1.06 16 27 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.10 1.69 8.00 -51.93 -0.42 1.27 16 30 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 31 H 0.08 2.20 6.52 -51.93 -0.34 1.86 16 32 H 0.07 1.60 3.32 -51.93 -0.17 1.42 16 33 H 0.02 0.50 8.14 -51.92 -0.42 0.08 16 34 H 0.04 1.04 7.96 -51.93 -0.41 0.63 16 35 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.05 1.01 2.81 -51.92 -0.15 0.87 16 LS Contribution 289.55 15.07 4.36 4.36 Total: -1.00 -29.42 289.55 -5.77 -35.20 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -5.49 Total: 1.55 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: 0.87 Total: -0.94 kcal Atomic # 7 Polarization: -36.40 SS G_CDS: 0.19 Total: -36.21 kcal Atomic # 8 Polarization: -18.78 SS G_CDS: -0.69 Total: -19.47 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -29.42 -5.77 -35.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260479357.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.984 kcal (2) G-P(sol) polarization free energy of solvation -29.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds