Wall clock time and date at job start Mon Mar 30 2020 06:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34643 * 116.99433 * 2 1 4 4 O 1.21506 * 120.00443 * 359.97438 * 3 2 1 5 5 N 1.34778 * 119.99666 * 179.97438 * 3 2 1 6 6 C 1.47069 * 136.05757 * 2.64026 * 5 3 2 7 7 C 1.53493 * 87.98353 * 152.91225 * 6 5 3 8 8 C 1.47061 * 136.05738 * 182.68486 * 5 3 2 9 9 H 1.08997 * 113.47121 * 321.92934 * 8 5 3 10 10 C 1.53005 * 113.46516 * 92.30819 * 8 5 3 11 11 H 1.08997 * 109.47083 * 52.89443 * 10 8 5 12 12 C 1.50704 * 109.47102 * 172.89419 * 10 8 5 13 13 H 1.08005 * 119.99896 * 5.34212 * 12 10 8 14 14 C 1.37875 * 119.99862 * 185.33834 * 12 10 8 15 15 N 1.31512 * 120.00203 * 5.50917 * 14 12 10 16 16 Si 1.86799 * 119.99654 * 185.50963 * 14 12 10 17 17 H 1.48500 * 109.47514 * 59.99909 * 16 14 12 18 18 H 1.48507 * 109.47180 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47407 * 299.99836 * 16 14 12 20 20 C 1.53002 * 109.47223 * 292.89314 * 10 8 5 21 21 C 1.52995 * 109.46820 * 318.49708 * 20 10 8 22 22 C 1.52999 * 109.46867 * 78.49679 * 20 10 8 23 23 H 1.08999 * 109.47220 * 299.99879 * 1 2 3 24 24 H 1.08997 * 109.47582 * 60.00515 * 1 2 3 25 25 H 1.09004 * 109.47041 * 180.02562 * 1 2 3 26 26 H 1.08996 * 113.46754 * 267.69102 * 6 5 3 27 27 H 1.09002 * 113.46859 * 38.12840 * 6 5 3 28 28 H 1.08999 * 114.20960 * 272.47690 * 7 6 5 29 29 H 1.09003 * 114.20350 * 139.65689 * 7 6 5 30 30 H 0.97000 * 120.00019 * 179.97438 * 15 14 12 31 31 H 1.08999 * 109.47055 * 198.49346 * 20 10 8 32 32 H 1.09003 * 109.47422 * 56.34050 * 21 20 10 33 33 H 1.09007 * 109.46759 * 176.33771 * 21 20 10 34 34 H 1.09003 * 109.47327 * 296.33619 * 21 20 10 35 35 H 1.08996 * 109.47248 * 64.41129 * 22 20 10 36 36 H 1.08999 * 109.46917 * 184.41727 * 22 20 10 37 37 H 1.09009 * 109.46933 * 304.41199 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0631 1.1997 0.0000 4 8 1.4013 2.2188 -0.0005 5 7 3.4091 1.2703 0.0005 6 6 4.5200 0.3077 -0.0459 7 6 5.3727 1.4057 -0.6965 8 6 4.4131 2.3438 0.0485 9 1 4.1331 3.2261 -0.5269 10 6 4.8732 2.6847 1.4674 11 1 5.2003 1.7753 1.9715 12 6 6.0179 3.6627 1.4029 13 1 6.3247 4.0731 0.4521 14 6 6.6735 4.0338 2.5576 15 7 6.3732 3.4544 3.6994 16 14 7.9883 5.3594 2.5003 17 1 7.3932 6.6258 2.0030 18 1 8.5370 5.5717 3.8639 19 1 9.0806 4.9343 1.5885 20 6 3.7121 3.3090 2.2439 21 6 2.9597 4.2858 1.3382 22 6 2.7584 2.2066 2.7089 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 4.8763 0.0082 0.9397 27 1 4.3312 -0.5417 -0.7024 28 1 5.2896 1.4517 -1.7823 29 1 6.4018 1.4430 -0.3389 30 1 6.8347 3.7151 4.5118 31 1 4.1005 3.8430 3.1111 32 1 2.6273 3.7659 0.4397 33 1 2.0944 4.6815 1.8702 34 1 3.6212 5.1061 1.0596 35 1 3.2727 1.5554 3.4156 36 1 1.8919 2.6565 3.1935 37 1 2.4311 1.6227 1.8486 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260479357.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:04 Heat of formation + Delta-G solvation = -56.503482 kcal Electronic energy + Delta-G solvation = -18950.735295 eV Core-core repulsion = 16115.345200 eV Total energy + Delta-G solvation = -2835.390095 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.04095 -40.13482 -37.13827 -36.73924 -34.04653 -31.58276 -29.41765 -28.06895 -27.89747 -26.40593 -24.53290 -23.19949 -21.26716 -20.13826 -18.62056 -18.32278 -17.83831 -17.47160 -16.57870 -16.03879 -15.49190 -15.30944 -14.78264 -14.58019 -14.27235 -14.03493 -13.69558 -13.35363 -13.00139 -12.91958 -12.85020 -12.77478 -12.60170 -12.23738 -12.07170 -11.83630 -11.75385 -11.59003 -11.53212 -11.03770 -10.86823 -10.75110 -10.33226 -9.47139 -8.05639 -6.14323 1.13227 1.47350 1.49856 1.55462 1.86140 2.49137 3.06262 3.26257 3.62814 4.16236 4.36374 4.36965 4.39425 4.44319 4.45703 4.50175 4.57637 4.63421 4.70416 4.73936 4.83332 4.87284 5.10048 5.10902 5.18562 5.23689 5.38504 5.47476 5.53860 5.66605 5.78432 5.93791 6.03625 6.38843 6.85217 6.96244 7.31531 7.52041 9.02120 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.036235 B = 0.007827 C = 0.007230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.545202 B = 3576.550790 C = 3871.886616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 O -0.380 6.380 3 C 0.668 3.332 4 O -0.597 6.597 5 N -0.633 5.633 6 C 0.111 3.889 7 C -0.134 4.134 8 C 0.162 3.838 9 H 0.066 0.934 10 C 0.061 3.939 11 H 0.016 0.984 12 C -0.515 4.515 13 H 0.062 0.938 14 C 0.020 3.980 15 N -0.916 5.916 16 Si 0.946 3.054 17 H -0.277 1.277 18 H -0.292 1.292 19 H -0.264 1.264 20 C -0.078 4.078 21 C -0.136 4.136 22 C -0.135 4.135 23 H 0.053 0.947 24 H 0.062 0.938 25 H 0.137 0.863 26 H 0.078 0.922 27 H 0.101 0.899 28 H 0.110 0.890 29 H 0.100 0.900 30 H 0.258 0.742 31 H 0.044 0.956 32 H 0.072 0.928 33 H 0.025 0.975 34 H 0.037 0.963 35 H 0.030 0.970 36 H 0.030 0.970 37 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.353 -7.768 -7.967 12.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 O -0.294 6.294 3 C 0.426 3.574 4 O -0.489 6.489 5 N -0.375 5.375 6 C -0.011 4.011 7 C -0.171 4.171 8 C 0.061 3.939 9 H 0.085 0.915 10 C 0.041 3.959 11 H 0.034 0.966 12 C -0.554 4.554 13 H 0.080 0.920 14 C -0.179 4.179 15 N -0.555 5.555 16 Si 0.772 3.228 17 H -0.203 1.203 18 H -0.218 1.218 19 H -0.189 1.189 20 C -0.097 4.097 21 C -0.193 4.193 22 C -0.193 4.193 23 H 0.072 0.928 24 H 0.081 0.919 25 H 0.155 0.845 26 H 0.096 0.904 27 H 0.120 0.880 28 H 0.128 0.872 29 H 0.118 0.882 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.091 0.909 33 H 0.044 0.956 34 H 0.057 0.943 35 H 0.049 0.951 36 H 0.050 0.950 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.829 -7.530 -7.795 12.306 hybrid contribution 0.319 1.004 0.778 1.309 sum -5.510 -6.527 -7.017 11.054 Atomic orbital electron populations 1.23448 0.73163 1.05416 1.02311 1.86260 1.25496 1.30437 1.87192 1.17471 0.81963 0.82200 0.75767 1.90918 1.64202 1.35618 1.58163 1.48899 1.00211 1.14537 1.73824 1.23065 0.82494 0.94269 1.01244 1.23348 0.98998 0.94328 1.00466 1.22854 0.82000 0.90792 0.98243 0.91539 1.18786 0.92280 0.95578 0.89211 0.96585 1.21219 1.14937 1.25773 0.93478 0.91982 1.25594 0.98896 0.98080 0.95366 1.70080 1.43325 1.42703 0.99421 0.85795 0.79931 0.80179 0.76846 1.20282 1.21829 1.18916 1.20921 0.94854 0.95568 0.98383 1.21918 0.97637 0.99040 1.00685 1.22006 0.98111 0.99124 1.00044 0.92827 0.91874 0.84494 0.90388 0.88042 0.87204 0.88207 0.93280 0.93722 0.90914 0.95621 0.94345 0.95066 0.95050 0.92468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.15 10.56 113.37 1.20 2.35 16 2 O -0.38 -11.96 10.59 -55.53 -0.59 -12.55 16 3 C 0.67 25.23 6.19 129.79 0.80 26.03 16 4 O -0.60 -25.42 13.52 19.82 0.27 -25.15 16 5 N -0.63 -23.05 2.60 -964.19 -2.51 -25.56 16 6 C 0.11 3.28 8.28 83.17 0.69 3.97 16 7 C -0.13 -4.01 7.96 30.93 0.25 -3.77 16 8 C 0.16 6.36 2.42 41.79 0.10 6.46 16 9 H 0.07 2.76 6.72 -2.39 -0.02 2.75 16 10 C 0.06 2.87 1.22 -11.54 -0.01 2.86 16 11 H 0.02 0.83 6.86 -2.39 -0.02 0.81 16 12 C -0.52 -26.24 7.96 25.60 0.20 -26.03 16 13 H 0.06 3.04 7.75 -2.91 -0.02 3.02 16 14 C 0.02 1.05 5.08 84.65 0.43 1.48 16 15 N -0.92 -51.72 12.08 21.45 0.26 -51.46 16 16 Si 0.95 42.13 29.54 68.60 2.03 44.16 16 17 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 18 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 19 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 20 C -0.08 -3.82 2.55 -10.79 -0.03 -3.85 16 21 C -0.14 -6.27 8.15 71.98 0.59 -5.68 16 22 C -0.14 -6.14 8.87 71.98 0.64 -5.51 16 23 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.14 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.08 2.47 7.29 -2.39 -0.02 2.45 16 27 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 28 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16 29 H 0.10 3.09 8.00 -2.39 -0.02 3.07 16 30 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 31 H 0.04 2.50 6.52 -2.39 -0.02 2.48 16 32 H 0.07 3.34 3.32 -2.39 -0.01 3.33 16 33 H 0.02 1.12 8.14 -2.38 -0.02 1.10 16 34 H 0.04 1.77 7.96 -2.39 -0.02 1.75 16 35 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.06 2.47 2.81 -2.38 -0.01 2.46 16 Total: -1.00 -63.20 289.55 5.36 -57.83 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: 1.05 Total: 14.42 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: 4.86 Total: -1.69 kcal Atomic # 7 Polarization: -74.77 SS G_CDS: -2.25 Total: -77.02 kcal Atomic # 8 Polarization: -37.38 SS G_CDS: -0.32 Total: -37.70 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Total: -63.20 5.36 -57.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260479357.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.330 kcal (2) G-P(sol) polarization free energy of solvation -63.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds