Wall clock time and date at job start Mon Mar 30 2020 05:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.37513 * 124.97485 * 2 1 4 4 C 1.39170 * 133.56378 * 359.97438 * 3 2 1 5 5 C 1.37744 * 119.75839 * 180.02562 * 4 3 2 6 6 C 1.38831 * 120.68867 * 359.93569 * 5 4 3 7 7 C 1.36637 * 120.51384 * 0.03121 * 6 5 4 8 8 C 1.39616 * 119.72021 * 0.02562 * 7 6 5 9 9 C 1.46693 * 133.92232 * 179.97438 * 8 7 6 10 10 C 1.34074 * 107.21200 * 180.02562 * 9 8 7 11 11 C 1.51673 * 110.15131 * 179.97438 * 10 9 8 12 12 C 1.54395 * 105.02550 * 343.00669 * 11 10 9 13 13 H 1.08991 * 110.99955 * 267.58694 * 12 11 10 14 14 C 1.50707 * 110.95999 * 143.85252 * 12 11 10 15 15 H 1.08000 * 119.99730 * 3.37133 * 14 12 11 16 16 C 1.37880 * 120.00009 * 183.37029 * 14 12 11 17 17 N 1.31510 * 120.00019 * 353.35542 * 16 14 12 18 18 Si 1.86798 * 119.99854 * 173.35392 * 16 14 12 19 19 H 1.48498 * 109.47130 * 265.14424 * 18 16 14 20 20 H 1.48499 * 109.47012 * 25.14364 * 18 16 14 21 21 H 1.48498 * 109.47148 * 145.14691 * 18 16 14 22 22 C 1.51304 * 142.14239 * 359.97438 * 9 8 7 23 23 H 1.09003 * 109.47209 * 89.97970 * 1 2 3 24 24 H 1.09004 * 109.47259 * 209.97690 * 1 2 3 25 25 H 1.08995 * 109.47536 * 329.97826 * 1 2 3 26 26 H 1.08006 * 120.11998 * 0.02562 * 4 3 2 27 27 H 1.08000 * 119.65333 * 179.97438 * 5 4 3 28 28 H 1.08005 * 119.74318 * 180.02562 * 6 5 4 29 29 H 1.08005 * 120.14126 * 180.02562 * 7 6 5 30 30 H 1.09008 * 110.32943 * 224.12641 * 11 10 9 31 31 H 1.08990 * 110.33051 * 101.90342 * 11 10 9 32 32 H 0.96995 * 119.99930 * 179.97438 * 17 16 14 33 33 H 1.09003 * 110.35622 * 78.13133 * 22 9 8 34 34 H 1.09002 * 110.35528 * 315.84541 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2532 1.1268 0.0000 4 6 1.9767 2.4907 -0.0005 5 6 3.0127 3.3984 -0.0008 6 6 4.3324 2.9673 0.0006 7 6 4.6264 1.6329 0.0017 8 6 3.5911 0.6961 0.0009 9 6 3.5456 -0.7701 0.0012 10 6 2.2532 -1.1269 -0.0005 11 6 2.1284 -2.6385 -0.0009 12 6 3.5172 -3.1546 -0.4350 13 1 3.5598 -3.3010 -1.5142 14 6 3.8717 -4.4257 0.2931 15 1 3.1600 -4.8779 0.9678 16 6 5.1047 -5.0111 0.0977 17 7 5.9201 -4.5367 -0.8185 18 14 5.6169 -6.4780 1.1347 19 1 6.4151 -6.0088 2.2957 20 1 4.4063 -7.1875 1.6206 21 1 6.4366 -7.4036 0.3122 22 6 4.4366 -1.9930 0.0020 23 1 -0.3634 0.0004 -1.0277 24 1 -0.3634 -0.8902 0.5135 25 1 -0.3634 0.8897 0.5141 26 1 0.9534 2.8363 -0.0005 27 1 2.7962 4.4565 -0.0016 28 1 5.1330 3.6923 0.0006 29 1 5.6552 1.3042 0.0032 30 1 1.3669 -2.9554 -0.7137 31 1 1.8858 -2.9987 0.9987 32 1 6.7876 -4.9483 -0.9557 33 1 4.8292 -2.1754 1.0023 34 1 5.2528 -1.8678 -0.7095 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260674654.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:18 Heat of formation + Delta-G solvation = 62.609973 kcal Electronic energy + Delta-G solvation = -16580.627489 eV Core-core repulsion = 14057.711461 eV Total energy + Delta-G solvation = -2522.916028 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 241.116 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.00306 -37.20807 -35.47994 -32.53964 -31.23172 -29.99870 -27.84571 -26.82912 -25.68865 -23.99020 -21.69227 -20.93669 -19.19299 -18.60484 -16.51239 -16.10616 -15.85946 -15.05043 -14.66531 -14.45038 -13.73508 -13.62437 -13.36832 -12.65659 -12.57159 -12.21872 -11.87875 -11.56013 -11.41511 -11.04846 -10.91397 -10.69072 -10.60121 -10.51854 -10.31995 -10.03482 -9.35829 -9.08399 -8.82662 -8.42065 -7.62528 -6.83844 -6.04705 -4.07683 1.53831 1.99924 3.11006 3.30149 3.31819 3.38219 3.40486 4.31529 4.42293 4.95348 5.00047 5.16896 5.28029 5.32870 5.36052 5.38672 5.55527 5.72908 5.90845 5.97472 6.07909 6.28947 6.31843 6.48392 6.59733 6.75789 6.87475 6.97254 7.10641 7.24823 7.31716 7.39447 7.63730 7.77942 7.87162 7.87570 7.96646 8.37598 8.94080 9.56455 11.05497 Molecular weight = 241.12amu Principal moments of inertia in cm(-1) A = 0.034990 B = 0.006263 C = 0.005499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.026536 B = 4469.510670 C = 5090.434151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.479 5.479 3 C 0.100 3.900 4 C -0.135 4.135 5 C -0.110 4.110 6 C -0.161 4.161 7 C -0.066 4.066 8 C -0.086 4.086 9 C -0.177 4.177 10 C 0.037 3.963 11 C -0.038 4.038 12 C 0.062 3.938 13 H 0.042 0.958 14 C -0.518 4.518 15 H 0.059 0.941 16 C 0.066 3.934 17 N -0.885 5.885 18 Si 0.890 3.110 19 H -0.280 1.280 20 H -0.274 1.274 21 H -0.287 1.287 22 C -0.029 4.029 23 H 0.062 0.938 24 H 0.079 0.921 25 H 0.072 0.928 26 H 0.112 0.888 27 H 0.117 0.883 28 H 0.115 0.885 29 H 0.120 0.880 30 H 0.053 0.947 31 H 0.073 0.927 32 H 0.261 0.739 33 H 0.062 0.938 34 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.550 11.430 1.419 13.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.163 5.163 3 C -0.006 4.006 4 C -0.156 4.156 5 C -0.129 4.129 6 C -0.180 4.180 7 C -0.085 4.085 8 C -0.092 4.092 9 C -0.183 4.183 10 C -0.067 4.067 11 C -0.076 4.076 12 C 0.043 3.957 13 H 0.060 0.940 14 C -0.556 4.556 15 H 0.078 0.922 16 C -0.136 4.136 17 N -0.522 5.522 18 Si 0.718 3.282 19 H -0.206 1.206 20 H -0.199 1.199 21 H -0.213 1.213 22 C -0.068 4.068 23 H 0.080 0.920 24 H 0.098 0.902 25 H 0.091 0.909 26 H 0.130 0.870 27 H 0.135 0.865 28 H 0.134 0.866 29 H 0.138 0.862 30 H 0.071 0.929 31 H 0.092 0.908 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.731 11.338 1.333 13.787 hybrid contribution 0.176 -0.578 0.542 0.812 sum -7.555 10.760 1.875 13.280 Atomic orbital electron populations 1.21814 0.78525 1.03420 1.02299 1.43314 1.04915 1.03376 1.64686 1.18095 0.89922 0.87831 1.04768 1.19867 0.98962 0.89112 1.07676 1.20627 0.92348 0.98228 1.01722 1.20503 0.96185 0.95317 1.06004 1.20352 0.98190 0.92016 0.97924 1.18869 0.91953 0.92401 1.05932 1.21929 0.96116 0.91653 1.08578 1.21776 0.90317 0.90959 1.03693 1.21178 1.01899 0.83338 1.01190 1.19409 0.86473 0.92624 0.97190 0.94035 1.21044 1.00441 1.07945 1.26160 0.92240 1.24966 0.96737 0.97022 0.94897 1.69979 1.09277 1.41555 1.31403 0.86606 0.78675 0.82476 0.80415 1.20641 1.19852 1.21258 1.20747 0.97003 0.88112 1.00902 0.91963 0.90230 0.90889 0.87034 0.86476 0.86646 0.86234 0.92873 0.90823 0.92876 0.91978 0.92112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.03 11.02 59.84 0.66 1.69 16 2 N -0.48 -8.53 3.19 -116.75 -0.37 -8.90 16 3 C 0.10 1.82 6.80 -84.10 -0.57 1.24 16 4 C -0.14 -2.02 9.96 -39.42 -0.39 -2.42 16 5 C -0.11 -1.52 10.01 -39.54 -0.40 -1.91 16 6 C -0.16 -2.36 9.97 -39.94 -0.40 -2.75 16 7 C -0.07 -1.16 10.05 -39.65 -0.40 -1.56 16 8 C -0.09 -1.74 6.37 -105.10 -0.67 -2.41 16 9 C -0.18 -3.93 7.14 -102.38 -0.73 -4.67 16 10 C 0.04 0.76 7.45 -81.03 -0.60 0.16 16 11 C -0.04 -0.79 6.34 -26.67 -0.17 -0.96 16 12 C 0.06 1.54 2.94 -90.28 -0.27 1.27 16 13 H 0.04 1.12 8.14 -51.93 -0.42 0.69 16 14 C -0.52 -13.82 8.40 -34.44 -0.29 -14.11 16 15 H 0.06 1.55 7.65 -52.49 -0.40 1.15 16 16 C 0.07 1.81 5.30 -17.82 -0.09 1.71 16 17 N -0.88 -25.10 12.87 55.43 0.71 -24.38 16 18 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 22 C -0.03 -0.71 5.71 -26.82 -0.15 -0.87 16 23 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 24 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 25 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 26 H 0.11 1.36 8.06 -52.48 -0.42 0.94 16 27 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 28 H 0.12 1.37 8.06 -52.48 -0.42 0.95 16 29 H 0.12 1.96 8.06 -52.48 -0.42 1.53 16 30 H 0.05 1.01 8.14 -51.92 -0.42 0.59 16 31 H 0.07 1.50 7.77 -51.93 -0.40 1.10 16 32 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 33 H 0.06 1.57 7.89 -51.93 -0.41 1.16 16 34 H 0.06 1.56 8.14 -51.93 -0.42 1.14 16 LS Contribution 287.04 15.07 4.33 4.33 Total: -1.00 -29.73 287.04 -9.40 -39.14 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: -4.57 Total: -0.42 kcal Atomic # 6 Polarization: -21.11 SS G_CDS: -4.47 Total: -25.58 kcal Atomic # 7 Polarization: -33.62 SS G_CDS: 0.34 Total: -33.28 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -29.73 -9.40 -39.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260674654.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.746 kcal (2) G-P(sol) polarization free energy of solvation -29.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds