Wall clock time and date at job start Mon Mar 30 2020 06:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47270 * 2 1 4 4 C 1.53007 * 109.46826 * 240.00151 * 2 1 3 5 5 N 1.46500 * 109.47112 * 120.00034 * 2 1 3 6 6 C 1.33994 * 125.55853 * 283.89370 * 5 2 1 7 7 O 1.21510 * 123.07620 * 0.02562 * 6 5 2 8 8 O 1.33778 * 113.85338 * 179.97438 * 6 5 2 9 9 C 1.45692 * 109.47893 * 359.97438 * 8 6 5 10 10 C 1.47097 * 125.55547 * 103.86784 * 5 2 1 11 11 C 1.52996 * 110.56477 * 61.45179 * 10 5 2 12 12 C 1.52992 * 110.69182 * 298.65402 * 10 5 2 13 13 C 1.50704 * 109.47514 * 185.77459 * 12 10 5 14 14 H 1.08004 * 119.99202 * 0.02562 * 13 12 10 15 15 C 1.37869 * 120.00689 * 180.02562 * 13 12 10 16 16 N 1.31524 * 119.99752 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 120.00258 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47372 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47423 * 120.00352 * 17 15 13 20 20 H 1.48504 * 109.47254 * 239.99885 * 17 15 13 21 21 H 1.08994 * 109.46816 * 294.79611 * 1 2 3 22 22 H 1.09001 * 109.46897 * 54.79061 * 1 2 3 23 23 H 1.09000 * 109.47553 * 174.79144 * 1 2 3 24 24 H 1.09000 * 109.46969 * 180.02562 * 3 2 1 25 25 H 1.09005 * 109.47127 * 300.00010 * 3 2 1 26 26 H 1.08997 * 109.47046 * 59.99803 * 3 2 1 27 27 H 1.08998 * 109.47116 * 301.53047 * 4 2 1 28 28 H 1.08999 * 109.47199 * 61.53249 * 4 2 1 29 29 H 1.09002 * 109.46890 * 181.53373 * 4 2 1 30 30 H 1.09005 * 110.52442 * 118.62900 * 9 8 6 31 31 H 1.08996 * 110.52607 * 241.23136 * 9 8 6 32 32 H 1.09002 * 109.47325 * 155.42139 * 11 10 5 33 33 H 1.09007 * 109.47262 * 275.41739 * 11 10 5 34 34 H 1.08997 * 109.47343 * 35.42010 * 11 10 5 35 35 H 1.09004 * 109.47607 * 305.77671 * 12 10 5 36 36 H 1.09007 * 109.47484 * 65.77879 * 12 10 5 37 37 H 0.96995 * 119.99761 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 2.0183 -0.6906 1.1962 6 6 2.0313 -0.1852 2.4371 7 8 1.6271 0.9294 2.7034 8 8 2.5289 -1.0202 3.3562 9 6 2.9204 -2.2693 2.7165 10 6 2.5739 -2.0522 1.2308 11 6 3.8329 -2.1411 0.3661 12 6 1.5325 -3.0729 0.7678 13 6 2.0794 -4.4656 0.9478 14 1 3.0706 -4.6083 1.3524 15 6 1.3147 -5.5575 0.5959 16 7 0.1078 -5.3836 0.1028 17 14 1.9924 -7.2837 0.8197 18 1 3.3623 -7.2079 1.3878 19 1 1.1140 -8.0445 1.7442 20 1 2.0399 -7.9712 -0.4958 21 1 -0.3633 0.4310 0.9329 22 1 -0.3633 0.5925 -0.8397 23 1 -0.3634 -1.0234 -0.0933 24 1 3.1300 1.4424 -0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6767 1.9563 0.8899 27 1 1.6544 -1.7407 -1.2632 28 1 1.6992 -0.1918 -2.1391 29 1 3.1296 -0.7452 -1.2357 30 1 3.9899 -2.4418 2.8375 31 1 2.3511 -3.1034 3.1265 32 1 4.4599 -2.9595 0.7202 33 1 3.5496 -2.3229 -0.6707 34 1 4.3863 -1.2045 0.4327 35 1 0.6244 -2.9599 1.3601 36 1 1.3029 -2.9060 -0.2846 37 1 -0.4303 -6.1518 -0.1444 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260696331.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:29 Heat of formation + Delta-G solvation = -75.473390 kcal Electronic energy + Delta-G solvation = -19112.135145 eV Core-core repulsion = 16275.922453 eV Total energy + Delta-G solvation = -2836.212692 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 2.73 seconds Orbital eigenvalues (eV) -41.30831 -37.26135 -36.85628 -34.15082 -32.49762 -30.69297 -27.79159 -27.23657 -26.77135 -25.71059 -23.57527 -22.21621 -20.15992 -19.13033 -16.43498 -16.24289 -16.13210 -15.58237 -14.69097 -14.40336 -14.16761 -13.98639 -13.36969 -13.17531 -13.10316 -12.69644 -12.40662 -12.19513 -11.75109 -11.63876 -11.46771 -11.24153 -11.15188 -11.08688 -10.78065 -10.65183 -10.55708 -10.25080 -10.00577 -9.81973 -9.66301 -9.17581 -8.54100 -8.23510 -6.20223 -4.24808 3.05641 3.19567 3.29010 3.30247 3.33414 4.07374 4.30548 4.90426 4.96664 5.16617 5.20027 5.34906 5.40979 5.65375 5.78466 5.82790 5.91352 5.98165 6.03549 6.07159 6.11440 6.20442 6.23979 6.33720 6.41673 6.57411 6.62499 6.67074 6.70156 7.13455 7.42413 7.47741 7.74502 8.01319 8.13942 8.65322 8.80159 9.40777 10.90426 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.029525 B = 0.008417 C = 0.007617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.112373 B = 3325.928625 C = 3675.133108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.204 3.796 3 C -0.164 4.164 4 C -0.173 4.173 5 N -0.610 5.610 6 C 0.643 3.357 7 O -0.546 6.546 8 O -0.343 6.343 9 C 0.054 3.946 10 C 0.124 3.876 11 C -0.142 4.142 12 C 0.026 3.974 13 C -0.526 4.526 14 H 0.061 0.939 15 C 0.063 3.937 16 N -0.887 5.887 17 Si 0.893 3.107 18 H -0.271 1.271 19 H -0.283 1.283 20 H -0.284 1.284 21 H 0.059 0.941 22 H 0.062 0.938 23 H 0.068 0.932 24 H 0.052 0.948 25 H 0.062 0.938 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.092 0.908 31 H 0.117 0.883 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.044 0.956 35 H 0.023 0.977 36 H 0.038 0.962 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.886 6.425 -2.268 8.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.122 3.878 3 C -0.221 4.221 4 C -0.230 4.230 5 N -0.356 5.356 6 C 0.397 3.603 7 O -0.435 6.435 8 O -0.253 6.253 9 C -0.020 4.020 10 C 0.040 3.960 11 C -0.200 4.200 12 C -0.011 4.011 13 C -0.565 4.565 14 H 0.079 0.921 15 C -0.140 4.140 16 N -0.525 5.525 17 Si 0.720 3.280 18 H -0.196 1.196 19 H -0.210 1.210 20 H -0.210 1.210 21 H 0.078 0.922 22 H 0.081 0.919 23 H 0.087 0.913 24 H 0.071 0.929 25 H 0.081 0.919 26 H 0.101 0.899 27 H 0.106 0.894 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.110 0.890 31 H 0.135 0.865 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.063 0.937 35 H 0.041 0.959 36 H 0.056 0.944 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.558 6.937 -1.974 8.532 hybrid contribution 0.271 -1.237 -0.009 1.266 sum 4.829 5.700 -1.983 7.729 Atomic orbital electron populations 1.22245 0.94500 1.03096 1.02044 1.20052 0.93662 0.91353 0.82771 1.22274 1.01016 0.95435 1.03410 1.22653 1.02208 1.02745 0.95407 1.48490 1.63944 1.16401 1.06795 1.18504 0.77356 0.84132 0.80300 1.90890 1.53084 1.16926 1.82553 1.87148 1.75591 1.27761 1.34821 1.24577 1.01878 0.84296 0.91257 1.22065 0.96748 0.82525 0.94654 1.22299 0.95800 1.00569 1.01358 1.19596 0.92395 0.91346 0.97791 1.21081 1.01612 0.90198 1.43580 0.92085 1.24976 0.94765 0.99339 0.94871 1.69961 1.09395 1.30768 1.42407 0.86526 0.79151 0.84394 0.77899 1.19599 1.20956 1.20969 0.92183 0.91934 0.91269 0.92914 0.91918 0.89884 0.89413 0.91819 0.91295 0.88986 0.86479 0.91324 0.90569 0.93707 0.95854 0.94435 0.92764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.61 8.73 37.16 0.32 -2.29 16 2 C 0.20 3.31 0.98 -131.82 -0.13 3.19 16 3 C -0.16 -2.42 8.19 37.16 0.30 -2.12 16 4 C -0.17 -2.54 6.72 37.16 0.25 -2.29 16 5 N -0.61 -11.29 2.30 -149.30 -0.34 -11.64 16 6 C 0.64 13.29 8.46 53.71 0.45 13.74 16 7 O -0.55 -12.26 15.36 -19.12 -0.29 -12.55 16 8 O -0.34 -6.88 11.09 -37.85 -0.42 -7.30 16 9 C 0.05 0.97 6.85 37.73 0.26 1.23 16 10 C 0.12 2.31 0.59 -130.93 -0.08 2.23 16 11 C -0.14 -2.29 6.64 37.16 0.25 -2.04 16 12 C 0.03 0.58 3.93 -27.89 -0.11 0.47 16 13 C -0.53 -12.69 7.66 -34.44 -0.26 -12.96 16 14 H 0.06 1.40 6.92 -52.48 -0.36 1.03 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 16 N -0.89 -24.28 13.29 55.43 0.74 -23.54 16 17 Si 0.89 19.77 29.54 -169.99 -5.02 14.75 16 18 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 19 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 20 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 21 H 0.06 1.05 8.09 -51.93 -0.42 0.63 16 22 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 23 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 24 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.08 1.41 5.96 -51.93 -0.31 1.10 16 27 H 0.09 1.50 4.65 -51.93 -0.24 1.25 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.07 0.95 5.63 -51.93 -0.29 0.66 16 30 H 0.09 1.39 7.59 -51.93 -0.39 1.00 16 31 H 0.12 2.19 7.20 -51.93 -0.37 1.81 16 32 H 0.07 1.06 7.40 -51.93 -0.38 0.68 16 33 H 0.08 1.23 5.53 -51.92 -0.29 0.94 16 34 H 0.04 0.66 7.95 -51.93 -0.41 0.24 16 35 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.04 0.88 5.24 -51.93 -0.27 0.61 16 37 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 286.42 15.07 4.32 4.32 Total: -1.00 -28.34 286.42 -5.29 -33.62 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -5.42 Total: 1.64 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: 1.16 Total: 0.69 kcal Atomic # 7 Polarization: -35.57 SS G_CDS: 0.39 Total: -35.18 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -0.71 Total: -19.84 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.75 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -28.34 -5.29 -33.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260696331.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.849 kcal (2) G-P(sol) polarization free energy of solvation -28.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.73 seconds