Wall clock time and date at job start Mon Mar 30 2020 05:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38482 * 126.25116 * 2 1 4 4 C 1.38706 * 107.88218 * 179.87467 * 3 2 1 5 5 C 1.47315 * 125.77426 * 180.15269 * 4 3 2 6 6 C 1.39929 * 120.17245 * 320.25410 * 5 4 3 7 7 C 1.37836 * 119.82029 * 179.97438 * 6 5 4 8 8 C 1.38466 * 120.17778 * 0.02562 * 7 6 5 9 9 C 1.38427 * 120.34945 * 359.97438 * 8 7 6 10 10 C 1.37880 * 120.17758 * 359.74367 * 9 8 7 11 11 C 1.50696 * 120.09213 * 180.27704 * 10 9 8 12 12 N 1.37221 * 108.44851 * 0.39429 * 4 3 2 13 13 H 0.96996 * 125.81045 * 179.77101 * 12 4 3 14 14 C 1.37998 * 108.38109 * 359.75836 * 12 4 3 15 15 C 1.39618 * 126.10342 * 179.97438 * 14 12 4 16 16 H 1.08003 * 119.99443 * 180.02562 * 15 14 12 17 17 C 1.40109 * 120.00078 * 0.02562 * 15 14 12 18 18 N 1.30828 * 120.00333 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00189 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46856 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.46921 * 120.00102 * 19 17 15 22 22 H 1.48490 * 109.47419 * 240.00278 * 19 17 15 23 23 H 1.09002 * 109.47152 * 269.68562 * 1 2 3 24 24 H 1.09001 * 109.46980 * 149.68663 * 1 2 3 25 25 H 1.09004 * 109.47113 * 29.68644 * 1 2 3 26 26 H 1.07997 * 126.05732 * 0.02562 * 3 2 1 27 27 H 1.07999 * 120.09363 * 359.96329 * 6 5 4 28 28 H 1.08004 * 119.90915 * 179.97438 * 7 6 5 29 29 H 1.07993 * 119.82479 * 179.97438 * 8 7 6 30 30 H 1.07997 * 119.91217 * 180.02562 * 9 8 7 31 31 H 1.09007 * 109.46882 * 270.23609 * 11 10 9 32 32 H 1.08998 * 109.46798 * 30.23329 * 11 10 9 33 33 H 1.08999 * 109.46892 * 150.23294 * 11 10 9 34 34 H 0.96989 * 120.00665 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3259 1.1168 0.0000 4 6 3.6423 0.6797 0.0029 5 6 4.8362 1.5426 0.0071 6 6 4.8634 2.7093 -0.7649 7 6 5.9841 3.5117 -0.7552 8 6 7.0813 3.1656 0.0153 9 6 7.0622 2.0130 0.7817 10 6 5.9466 1.2028 0.7873 11 6 5.9255 -0.0482 1.6272 12 7 3.6442 -0.6925 -0.0043 13 1 4.4316 -1.2590 -0.0073 14 6 2.3353 -1.1295 -0.0062 15 6 1.9121 -2.4600 -0.0136 16 1 0.8571 -2.6911 -0.0148 17 6 2.8561 -3.4954 -0.0193 18 7 4.1341 -3.2155 -0.0172 19 14 2.2900 -5.2755 -0.0298 20 1 0.8057 -5.3228 -0.0312 21 1 2.8076 -5.9523 -1.2461 22 1 2.8066 -5.9664 1.1788 23 1 -0.3633 -0.0056 1.0277 24 1 -0.3633 -0.8872 -0.5187 25 1 -0.3633 0.8928 -0.5090 26 1 1.9977 2.1457 0.0004 27 1 4.0087 2.9804 -1.3669 28 1 6.0068 4.4124 -1.3508 29 1 7.9566 3.7982 0.0184 30 1 7.9217 1.7500 1.3804 31 1 6.3093 -0.8846 1.0429 32 1 6.5497 0.0957 2.5090 33 1 4.9023 -0.2606 1.9370 34 1 4.7876 -3.9321 -0.0208 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260829022.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:28 Heat of formation + Delta-G solvation = 20.986223 kcal Electronic energy + Delta-G solvation = -16627.954236 eV Core-core repulsion = 14103.233266 eV Total energy + Delta-G solvation = -2524.720970 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 241.116 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.20500 -39.52692 -35.43716 -33.92597 -32.81705 -32.04098 -30.00804 -28.29343 -27.48058 -25.57397 -23.31075 -22.20364 -20.64755 -20.02677 -18.99929 -17.60832 -16.72185 -16.23654 -15.99262 -15.42730 -14.86798 -14.40396 -14.34577 -14.17694 -13.97202 -13.90820 -13.29734 -13.12270 -13.08399 -12.95761 -12.74117 -12.71140 -12.30720 -12.24796 -11.83580 -11.66836 -11.55312 -11.24911 -9.85871 -9.56468 -8.99318 -8.77373 -8.51670 -6.12228 0.36179 0.57001 1.28229 1.39405 1.54968 1.99046 2.20295 2.33833 2.99952 3.36925 3.39015 4.04565 4.06827 4.23878 4.34892 4.48923 4.66916 4.71709 4.73941 4.85569 4.96343 4.98929 5.07354 5.15362 5.21990 5.23598 5.33574 5.47884 5.55227 5.66590 5.74727 5.82006 5.94646 6.15572 6.23516 6.29616 6.79328 7.00657 7.20233 7.76302 8.31303 Molecular weight = 241.12amu Principal moments of inertia in cm(-1) A = 0.027077 B = 0.007399 C = 0.006090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.831433 B = 3783.627980 C = 4596.340495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 C -0.330 4.330 3 C -0.155 4.155 4 C -0.086 4.086 5 C -0.007 4.007 6 C -0.133 4.133 7 C -0.118 4.118 8 C -0.137 4.137 9 C -0.117 4.117 10 C -0.120 4.120 11 C -0.105 4.105 12 N -0.549 5.549 13 H 0.418 0.582 14 C 0.202 3.798 15 C -0.470 4.470 16 H 0.093 0.907 17 C 0.023 3.977 18 N -0.871 5.871 19 Si 1.001 2.999 20 H -0.257 1.257 21 H -0.269 1.269 22 H -0.268 1.268 23 H 0.039 0.961 24 H 0.042 0.958 25 H 0.053 0.947 26 H 0.120 0.880 27 H 0.119 0.881 28 H 0.149 0.851 29 H 0.153 0.847 30 H 0.141 0.859 31 H 0.056 0.944 32 H 0.083 0.917 33 H 0.041 0.959 34 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.012 5.588 0.510 7.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.334 4.334 3 C -0.180 4.180 4 C -0.194 4.194 5 C -0.007 4.007 6 C -0.152 4.152 7 C -0.135 4.135 8 C -0.155 4.155 9 C -0.135 4.135 10 C -0.120 4.120 11 C -0.162 4.162 12 N -0.156 5.156 13 H 0.266 0.734 14 C 0.084 3.916 15 C -0.505 4.505 16 H 0.111 0.889 17 C -0.186 4.186 18 N -0.504 5.504 19 Si 0.822 3.178 20 H -0.180 1.180 21 H -0.194 1.194 22 H -0.193 1.193 23 H 0.058 0.942 24 H 0.061 0.939 25 H 0.072 0.928 26 H 0.138 0.862 27 H 0.137 0.863 28 H 0.167 0.833 29 H 0.170 0.830 30 H 0.159 0.841 31 H 0.075 0.925 32 H 0.102 0.898 33 H 0.060 0.940 34 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 5.386 5.445 0.511 7.676 hybrid contribution 0.002 -1.095 -0.004 1.095 sum 5.389 4.350 0.508 6.944 Atomic orbital electron populations 1.19663 0.90461 1.00101 0.99383 1.19808 0.95464 0.92064 1.26052 1.20609 0.91268 0.96963 1.09201 1.19048 0.93493 0.83533 1.23287 1.18375 0.91479 0.94526 0.96371 1.21339 0.99526 0.94936 0.99366 1.21321 0.92740 0.99887 0.99583 1.21465 0.99381 0.97180 0.97435 1.21161 0.97048 0.95009 1.00281 1.20257 0.94821 0.98226 0.98697 1.20704 1.01743 0.94711 0.99026 1.43147 1.08525 1.04895 1.59069 0.73387 1.18399 0.82504 0.93726 0.96966 1.19091 0.95471 0.89142 1.46776 0.88889 1.26833 0.94056 1.06491 0.91264 1.68842 1.02782 1.37013 1.41784 0.84825 0.79622 0.74743 0.78561 1.18003 1.19374 1.19252 0.94240 0.93852 0.92769 0.86179 0.86294 0.83292 0.82981 0.84107 0.92530 0.89812 0.93953 0.89563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -1.66 10.14 71.24 0.72 -0.94 16 2 C -0.33 -17.03 6.22 -19.36 -0.12 -17.15 16 3 C -0.15 -7.66 10.45 22.44 0.23 -7.42 16 4 C -0.09 -4.29 5.85 40.80 0.24 -4.05 16 5 C -0.01 -0.28 5.83 -20.08 -0.12 -0.40 16 6 C -0.13 -4.80 9.61 22.58 0.22 -4.58 16 7 C -0.12 -3.32 10.03 22.23 0.22 -3.10 16 8 C -0.14 -3.59 10.04 22.37 0.22 -3.37 16 9 C -0.12 -3.54 9.69 22.23 0.22 -3.32 16 10 C -0.12 -4.58 5.92 -19.55 -0.12 -4.70 16 11 C -0.11 -4.05 8.53 71.23 0.61 -3.44 16 12 N -0.55 -29.40 4.63 -175.51 -0.81 -30.21 16 13 H 0.42 22.30 4.81 -92.71 -0.45 21.85 16 14 C 0.20 11.21 6.69 38.95 0.26 11.48 16 15 C -0.47 -25.28 9.04 23.06 0.21 -25.07 16 16 H 0.09 4.80 7.25 -2.91 -0.02 4.78 16 17 C 0.02 1.15 5.50 85.30 0.47 1.61 16 18 N -0.87 -44.09 10.65 21.86 0.23 -43.86 16 19 Si 1.00 38.18 29.56 68.60 2.03 40.21 16 20 H -0.26 -9.52 7.11 99.48 0.71 -8.82 16 21 H -0.27 -9.91 7.11 99.48 0.71 -9.21 16 22 H -0.27 -9.83 7.11 99.48 0.71 -9.12 16 23 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 24 H 0.04 1.82 7.51 -2.39 -0.02 1.80 16 25 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 26 H 0.12 5.30 8.06 -2.91 -0.02 5.28 16 27 H 0.12 4.16 8.01 -2.91 -0.02 4.14 16 28 H 0.15 3.12 8.06 -2.91 -0.02 3.10 16 29 H 0.15 2.80 8.06 -2.91 -0.02 2.77 16 30 H 0.14 3.39 8.06 -2.91 -0.02 3.37 16 31 H 0.06 2.24 7.75 -2.38 -0.02 2.22 16 32 H 0.08 2.63 8.09 -2.39 -0.02 2.61 16 33 H 0.04 1.91 6.45 -2.39 -0.02 1.89 16 34 H 0.29 13.41 8.30 -92.72 -0.77 12.65 16 Total: -1.00 -60.78 286.40 5.37 -55.40 By element: Atomic # 1 Polarization: 42.25 SS G_CDS: 0.66 Total: 42.91 kcal Atomic # 6 Polarization: -67.73 SS G_CDS: 3.27 Total: -64.46 kcal Atomic # 7 Polarization: -73.49 SS G_CDS: -0.58 Total: -74.07 kcal Atomic # 14 Polarization: 38.18 SS G_CDS: 2.03 Total: 40.21 kcal Total: -60.78 5.37 -55.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260829022.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.390 kcal (2) G-P(sol) polarization free energy of solvation -60.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds