Wall clock time and date at job start Mon Mar 30 2020 05:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 110.86775 * 2 1 4 4 C 1.54463 * 110.95145 * 123.76048 * 2 1 3 5 5 C 1.51660 * 104.28084 * 143.48479 * 4 2 1 6 6 C 1.39296 * 140.45836 * 162.51927 * 5 4 2 7 7 C 1.40884 * 126.90015 * 1.17774 * 6 5 4 8 8 H 1.08000 * 120.00106 * 321.49660 * 7 6 5 9 9 C 1.39742 * 119.99965 * 141.77230 * 7 6 5 10 10 N 1.31052 * 120.00336 * 155.65068 * 9 7 6 11 11 Si 1.86804 * 120.00093 * 335.64992 * 9 7 6 12 12 H 1.48497 * 109.47274 * 95.39855 * 11 9 7 13 13 H 1.48495 * 109.47157 * 215.40711 * 11 9 7 14 14 H 1.48507 * 109.46713 * 335.40284 * 11 9 7 15 15 C 1.47506 * 106.20064 * 180.91684 * 6 5 4 16 16 C 1.39258 * 133.84814 * 180.15312 * 15 6 5 17 17 C 1.37885 * 119.62499 * 180.02562 * 16 15 6 18 18 C 1.38671 * 120.30356 * 0.02562 * 17 16 15 19 19 C 1.37901 * 120.60239 * 359.97438 * 18 17 16 20 20 C 1.39077 * 119.86214 * 0.02562 * 19 18 17 21 21 N 1.35624 * 110.06349 * 343.71153 * 5 4 2 22 22 C 1.47583 * 110.62417 * 359.17757 * 21 5 4 23 23 H 1.09003 * 109.46635 * 182.31087 * 1 2 3 24 24 H 1.08996 * 109.46694 * 302.30602 * 1 2 3 25 25 H 1.08996 * 109.47388 * 62.30848 * 1 2 3 26 26 H 1.09003 * 110.47962 * 262.39565 * 4 2 1 27 27 H 1.08997 * 110.48420 * 25.02947 * 4 2 1 28 28 H 0.96999 * 120.00386 * 179.97438 * 10 9 7 29 29 H 1.07995 * 120.18256 * 0.04893 * 16 15 6 30 30 H 1.07997 * 119.84502 * 180.02562 * 17 16 15 31 31 H 1.08002 * 119.69864 * 179.97438 * 18 17 16 32 32 H 1.08004 * 120.07008 * 179.97438 * 19 18 17 33 33 H 1.08997 * 110.21320 * 136.78029 * 22 21 5 34 34 H 1.08995 * 110.21485 * 258.68833 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9183 1.0185 0.0000 4 6 2.0824 -0.8016 1.1993 5 6 3.3193 -1.4881 0.6526 6 6 4.4799 -2.1204 1.0925 7 6 4.8674 -2.3431 2.4285 8 1 4.6816 -1.5878 3.1778 9 6 5.4974 -3.5389 2.7832 10 7 6.2689 -3.5843 3.8416 11 14 5.2399 -5.0729 1.7488 12 1 6.3489 -5.2016 0.7697 13 1 5.2175 -6.2670 2.6312 14 1 3.9484 -4.9694 1.0230 15 6 5.2186 -2.5156 -0.1216 16 6 6.4258 -3.1730 -0.3451 17 6 6.8512 -3.3961 -1.6376 18 6 6.0836 -2.9689 -2.7105 19 6 4.8865 -2.3169 -2.5017 20 6 4.4421 -2.0834 -1.2047 21 7 3.3028 -1.4658 -0.7034 22 6 2.0816 -0.8006 -1.1976 23 1 -0.3633 -1.0269 0.0414 24 1 -0.3632 0.5492 0.8686 25 1 -0.3634 0.4775 -0.9099 26 1 2.3449 -0.1312 2.0177 27 1 1.3548 -1.5426 1.5304 28 1 6.7060 -4.4145 4.0881 29 1 7.0250 -3.5065 0.4891 30 1 7.7866 -3.9059 -1.8150 31 1 6.4264 -3.1484 -3.7188 32 1 4.2957 -1.9874 -3.3437 33 1 2.3255 -0.1281 -2.0199 34 1 1.3529 -1.5436 -1.5215 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261041935.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:54 Heat of formation + Delta-G solvation = 42.044532 kcal Electronic energy + Delta-G solvation = -17037.530742 eV Core-core repulsion = 14513.722929 eV Total energy + Delta-G solvation = -2523.807813 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 241.116 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.11721 -38.86727 -35.99258 -35.10194 -32.87846 -30.72946 -30.40691 -28.72550 -27.15573 -25.18116 -22.96823 -22.13771 -21.10810 -20.31758 -19.12903 -17.46359 -17.05164 -16.72157 -16.08920 -15.61474 -15.12729 -14.94045 -14.69945 -14.22746 -14.01148 -13.84615 -13.66187 -13.17099 -13.09740 -12.71583 -12.67605 -12.52899 -12.21956 -12.12474 -11.81478 -11.69280 -11.43275 -11.25033 -10.97362 -10.04845 -8.78304 -8.66405 -8.38692 -6.06475 0.35692 0.85743 1.22637 1.31627 1.46678 1.94730 2.18120 2.25293 2.94883 3.30522 3.44442 3.82809 3.90070 4.02342 4.24295 4.29389 4.39029 4.46253 4.57100 4.65882 4.72117 4.82441 4.93839 4.97283 5.02202 5.11364 5.19182 5.23124 5.36787 5.42875 5.53428 5.66748 5.80872 6.00163 6.24683 6.31516 6.51021 6.84365 6.97402 7.13323 8.45716 Molecular weight = 241.12amu Principal moments of inertia in cm(-1) A = 0.019856 B = 0.011401 C = 0.007951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.842840 B = 2455.261710 C = 3520.920752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.091 4.091 3 H 0.092 0.908 4 C -0.038 4.038 5 C -0.087 4.087 6 C -0.012 4.012 7 C -0.478 4.478 8 H 0.044 0.956 9 C 0.057 3.943 10 N -0.879 5.879 11 Si 0.932 3.068 12 H -0.236 1.236 13 H -0.281 1.281 14 H -0.279 1.279 15 C -0.156 4.156 16 C -0.091 4.091 17 C -0.175 4.175 18 C -0.100 4.100 19 C -0.148 4.148 20 C 0.099 3.901 21 N -0.505 5.505 22 C 0.116 3.884 23 H 0.057 0.943 24 H 0.072 0.928 25 H 0.081 0.919 26 H 0.067 0.933 27 H 0.075 0.925 28 H 0.282 0.718 29 H 0.098 0.902 30 H 0.139 0.861 31 H 0.159 0.841 32 H 0.139 0.861 33 H 0.093 0.907 34 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.234 3.454 -13.031 15.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.110 4.110 3 H 0.110 0.890 4 C -0.076 4.076 5 C -0.193 4.193 6 C -0.018 4.018 7 C -0.511 4.511 8 H 0.062 0.938 9 C -0.152 4.152 10 N -0.510 5.510 11 Si 0.757 3.243 12 H -0.160 1.160 13 H -0.208 1.208 14 H -0.205 1.205 15 C -0.162 4.162 16 C -0.110 4.110 17 C -0.195 4.195 18 C -0.119 4.119 19 C -0.169 4.169 20 C -0.009 4.009 21 N -0.191 5.191 22 C -0.003 4.003 23 H 0.076 0.924 24 H 0.091 0.909 25 H 0.100 0.900 26 H 0.086 0.914 27 H 0.094 0.906 28 H 0.092 0.908 29 H 0.116 0.884 30 H 0.157 0.843 31 H 0.177 0.823 32 H 0.157 0.843 33 H 0.111 0.889 34 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.342 3.499 -13.122 15.938 hybrid contribution 0.366 -0.693 0.611 0.994 sum -7.976 2.806 -12.511 15.100 Atomic orbital electron populations 1.21708 0.90658 1.02732 1.03692 1.22155 0.98177 0.98722 0.91909 0.88976 1.20675 0.91605 0.97450 0.97880 1.22504 0.98635 1.14107 0.84048 1.17767 0.91395 1.01198 0.91435 1.18249 1.37469 1.02481 0.92938 0.93788 1.26256 0.91379 1.01913 0.95622 1.69904 1.24188 1.29128 1.27783 0.86119 0.80739 0.78178 0.79287 1.15967 1.20792 1.20457 1.19515 0.96844 1.06121 0.93723 1.20709 0.94744 0.97767 0.97747 1.21023 1.01941 1.05148 0.91351 1.21039 0.93461 0.97875 0.99542 1.20330 0.98911 1.05042 0.92592 1.18322 0.87606 1.00251 0.94709 1.44961 1.17401 1.49835 1.06865 1.22554 0.83463 0.96056 0.98252 0.92406 0.90871 0.90006 0.91391 0.90630 0.90847 0.88387 0.84324 0.82331 0.84346 0.88904 0.89794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.28 9.12 71.98 0.66 -1.62 16 2 C -0.09 -2.31 3.73 -9.87 -0.04 -2.34 16 3 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 4 C -0.04 -1.37 6.41 30.65 0.20 -1.18 16 5 C -0.09 -4.11 7.43 42.53 0.32 -3.80 16 6 C -0.01 -0.65 5.00 -19.93 -0.10 -0.75 16 7 C -0.48 -29.39 9.80 23.28 0.23 -29.16 16 8 H 0.04 2.91 8.06 -2.91 -0.02 2.88 16 9 C 0.06 3.40 5.18 85.17 0.44 3.84 16 10 N -0.88 -53.06 13.94 21.80 0.30 -52.76 16 11 Si 0.93 47.24 24.39 68.60 1.67 48.92 16 12 H -0.24 -11.12 5.37 99.48 0.53 -10.59 16 13 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 14 H -0.28 -14.92 7.11 99.48 0.71 -14.21 16 15 C -0.16 -7.97 5.03 -20.13 -0.10 -8.08 16 16 C -0.09 -4.32 7.21 22.43 0.16 -4.16 16 17 C -0.17 -6.57 10.03 22.29 0.22 -6.35 16 18 C -0.10 -3.24 10.02 22.29 0.22 -3.02 16 19 C -0.15 -5.22 10.08 22.39 0.23 -5.00 16 20 C 0.10 4.35 7.21 38.67 0.28 4.63 16 21 N -0.51 -20.81 3.56 -491.52 -1.75 -22.56 16 22 C 0.12 3.27 7.33 86.60 0.63 3.90 16 23 H 0.06 1.05 8.09 -2.39 -0.02 1.03 16 24 H 0.07 1.15 8.14 -2.39 -0.02 1.14 16 25 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 27 H 0.08 2.62 7.86 -2.39 -0.02 2.60 16 28 H 0.28 15.51 8.30 -92.71 -0.77 14.74 16 29 H 0.10 4.93 5.88 -2.91 -0.02 4.91 16 30 H 0.14 4.28 8.06 -2.91 -0.02 4.26 16 31 H 0.16 3.63 8.06 -2.91 -0.02 3.60 16 32 H 0.14 3.85 8.06 -2.91 -0.02 3.83 16 33 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.08 2.10 7.89 -2.39 -0.02 2.08 16 Total: -1.00 -72.63 276.01 4.49 -68.14 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: 0.91 Total: 11.33 kcal Atomic # 6 Polarization: -56.42 SS G_CDS: 3.35 Total: -53.07 kcal Atomic # 7 Polarization: -73.87 SS G_CDS: -1.44 Total: -75.32 kcal Atomic # 14 Polarization: 47.24 SS G_CDS: 1.67 Total: 48.92 kcal Total: -72.63 4.49 -68.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261041935.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.187 kcal (2) G-P(sol) polarization free energy of solvation -72.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds